RNA–Protein interactions for RNA: ENST00000474157.1

GPNMB-209, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 513 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-209ENST00000474157 GABBR2O75899 941 aa11.73□□□□□ -0.53
GPNMB-209ENST00000474157 CRISPLD2Q9H0B8 497 aa11.73□□□□□ -0.53
GPNMB-209ENST00000474157 E2F4Q16254 413 aa11.72□□□□□ -0.53
GPNMB-209ENST00000474157 DPY19L2Q6NUT2 758 aa11.72□□□□□ -0.53
GPNMB-209ENST00000474157 POTEHQ6S545 545 aa11.72□□□□□ -0.53
GPNMB-209ENST00000474157 PDCD7Q8N8D1 485 aaKnown RBP11.71□□□□□ -0.53
GPNMB-209ENST00000474157 HRCP23327 699 aa11.7□□□□□ -0.54
GPNMB-209ENST00000474157 MFSD10Q14728 455 aa11.7□□□□□ -0.54
GPNMB-209ENST00000474157 IRX5P78411 483 aaPredicted RBP11.69□□□□□ -0.54
GPNMB-209ENST00000474157 IER5LQ5T953 404 aa11.69□□□□□ -0.54
GPNMB-209ENST00000474157 DDX27Q96GQ7 796 aaKnown RBP11.69□□□□□ -0.54
GPNMB-209ENST00000474157 ARHGEF1Q92888 912 aaKnown RBP11.67□□□□□ -0.54
GPNMB-209ENST00000474157 MICALL2Q8IY33 904 aa11.66□□□□□ -0.54
GPNMB-209ENST00000474157 OCEL1Q9H607 264 aa11.66□□□□□ -0.54
GPNMB-209ENST00000474157 PLCG2P16885 1265 aa11.64□□□□□ -0.55
GPNMB-209ENST00000474157 DCBLD2Q96PD2 775 aa11.64□□□□□ -0.55
GPNMB-209ENST00000474157 GPHNQ9NQX3 736 aaPredicted RBP11.62□□□□□ -0.55
GPNMB-209ENST00000474157 PPP1R15BQ5SWA1 713 aa11.6□□□□□ -0.55
GPNMB-209ENST00000474157 BOLA1Q9Y3E2 137 aa11.6□□□□□ -0.55
GPNMB-209ENST00000474157 ERCC6Q03468 1493 aa11.59□□□□□ -0.55
GPNMB-209ENST00000474157 G3V3G9 751 aa11.59□□□□□ -0.55
GPNMB-209ENST00000474157 CAMK2BQ13554 666 aa11.58□□□□□ -0.56
GPNMB-209ENST00000474157 SEC24BO95487 1268 aa11.57□□□□□ -0.56
GPNMB-209ENST00000474157 TMC2Q8TDI7 906 aa11.57□□□□□ -0.56
GPNMB-209ENST00000474157 TMEM121BQ9BXQ6 578 aaPredicted RBP11.57□□□□□ -0.56
GPNMB-209ENST00000474157 COLQQ9Y215 455 aaPredicted RBP11.56□□□□□ -0.56
GPNMB-209ENST00000474157 SEMA3EO15041 775 aa11.55□□□□□ -0.56
GPNMB-209ENST00000474157 DSG2Q14126 1118 aa11.55□□□□□ -0.56
GPNMB-209ENST00000474157 LMOD2Q6P5Q4 547 aa11.55□□□□□ -0.56
GPNMB-209ENST00000474157 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.54□□□□□ -0.56
GPNMB-209ENST00000474157 SLC39A7Q92504 469 aa11.54□□□□□ -0.56
GPNMB-209ENST00000474157 L3MBTL3Q96JM7 780 aaPredicted RBP11.54□□□□□ -0.56
GPNMB-209ENST00000474157 SCRIBQ14160 1630 aa11.53□□□□□ -0.56
GPNMB-209ENST00000474157 TULP1O00294 542 aaPredicted RBP11.53□□□□□ -0.56
GPNMB-209ENST00000474157 DAXXQ9UER7 740 aaPredicted RBP11.53□□□□□ -0.56
GPNMB-209ENST00000474157 ARIH1Q9Y4X5 557 aaPredicted RBP11.53□□□□□ -0.56
GPNMB-209ENST00000474157 TESPA1A2RU30 521 aaPredicted RBP11.51□□□□□ -0.57
GPNMB-209ENST00000474157 C2orf72A6NCS6 295 aa11.51□□□□□ -0.57
GPNMB-209ENST00000474157 FOXK1P85037 733 aa11.51□□□□□ -0.57
GPNMB-209ENST00000474157 POTEIP0CG38 1075 aa11.5□□□□□ -0.57
GPNMB-209ENST00000474157 POTEFA5A3E0 1075 aa11.49□□□□□ -0.57
GPNMB-209ENST00000474157 C7P10643 843 aa11.49□□□□□ -0.57
GPNMB-209ENST00000474157 SP7Q8TDD2 431 aaPredicted RBP11.49□□□□□ -0.57
GPNMB-209ENST00000474157 METRNQ9UJH8 293 aa11.49□□□□□ -0.57
GPNMB-209ENST00000474157 KIF3CO14782 793 aa11.48□□□□□ -0.57
GPNMB-209ENST00000474157 PLPP6Q8IY26 295 aa11.48□□□□□ -0.57
GPNMB-209ENST00000474157 EMILIN3Q9NT22 766 aa11.48□□□□□ -0.57
GPNMB-209ENST00000474157 DPYSL4O14531 572 aa11.46□□□□□ -0.57
GPNMB-209ENST00000474157 TMEM92Q6UXU6 159 aa11.45□□□□□ -0.58
GPNMB-209ENST00000474157 SMYD5Q6GMV2 418 aa11.42□□□□□ -0.58
GPNMB-209ENST00000474157 BCL11AQ9H165 835 aa11.41□□□□□ -0.58
GPNMB-209ENST00000474157 DCAF1Q9Y4B6 1507 aa11.4□□□□□ -0.58
GPNMB-209ENST00000474157 C3orf67Q6ZVT6 689 aa11.4□□□□□ -0.58
GPNMB-209ENST00000474157 MLLT3P42568 568 aaPredicted RBP11.39□□□□□ -0.59
GPNMB-209ENST00000474157 PDIA6Q15084 440 aa11.39□□□□□ -0.59
GPNMB-209ENST00000474157 SPDYE16A6NNV3 312 aaPredicted RBP11.38□□□□□ -0.59
GPNMB-209ENST00000474157 ZC3H15Q8WU90 426 aaKnown RBP11.37□□□□□ -0.59
GPNMB-209ENST00000474157 UPF1Q92900 1129 aaKnown RBP eCLIP11.36□□□□□ -0.59
GPNMB-209ENST00000474157 CENPBP07199 599 aaPredicted RBP11.34□□□□□ -0.59
GPNMB-209ENST00000474157 MAP3K9P80192 1104 aa11.34□□□□□ -0.59
GPNMB-209ENST00000474157 ZCCHC6Q5VYS8 1495 aaKnown RBP11.33□□□□□ -0.6
GPNMB-209ENST00000474157 RBM26Q5T8P6 1007 aaKnown RBP11.31□□□□□ -0.6
GPNMB-209ENST00000474157 OXER1Q8TDS5 423 aa11.31□□□□□ -0.6
GPNMB-209ENST00000474157 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.29□□□□□ -0.6
GPNMB-209ENST00000474157 NCAPD3P42695 1498 aa11.29□□□□□ -0.6
GPNMB-209ENST00000474157 GPIHBP1Q8IV16 184 aa11.27□□□□□ -0.61
GPNMB-209ENST00000474157 GRXCR2A6NFK2 248 aa11.26□□□□□ -0.61
GPNMB-209ENST00000474157 NESP48681 1621 aa11.25□□□□□ -0.61
GPNMB-209ENST00000474157 ZMYND10O75800 440 aa11.25□□□□□ -0.61
GPNMB-209ENST00000474157 TBC1D12O60347 775 aa11.24□□□□□ -0.61
GPNMB-209ENST00000474157 SLC24A3Q9HC58 644 aa11.24□□□□□ -0.61
GPNMB-209ENST00000474157 PTCD2Q8WV60 388 aaKnown RBP11.23□□□□□ -0.61
GPNMB-209ENST00000474157 EVI5O60447 810 aa11.22□□□□□ -0.61
GPNMB-209ENST00000474157 DDX12PQ92771 950 aa11.21□□□□□ -0.61
GPNMB-209ENST00000474157 ZNF316A6NFI3 1004 aaPredicted RBP11.2□□□□□ -0.62
GPNMB-209ENST00000474157 SLC34A2O95436 690 aa11.2□□□□□ -0.62
GPNMB-209ENST00000474157 BARGINQ6ZT62 677 aa11.2□□□□□ -0.62
GPNMB-209ENST00000474157 PTGER2P43116 358 aa11.19□□□□□ -0.62
GPNMB-209ENST00000474157 POTEJP0CG39 1038 aa11.17□□□□□ -0.62
GPNMB-209ENST00000474157 OSBPP22059 807 aa11.17□□□□□ -0.62
GPNMB-209ENST00000474157 THOC2Q8NI27 1593 aaKnown RBP11.16□□□□□ -0.62
GPNMB-209ENST00000474157 NUTM2FA1L443 756 aa11.15□□□□□ -0.62
GPNMB-209ENST00000474157 POTEB2H3BUK9 544 aa11.15□□□□□ -0.62
GPNMB-209ENST00000474157 GPR37O15354 613 aa11.15□□□□□ -0.62
GPNMB-209ENST00000474157 ATAD2BQ9ULI0 1458 aa11.14□□□□□ -0.63
GPNMB-209ENST00000474157 BRPF1P55201 1214 aaPredicted RBP11.14□□□□□ -0.63
GPNMB-209ENST00000474157 PCDHGA4Q9Y5G9 962 aa11.14□□□□□ -0.63
GPNMB-209ENST00000474157 KRI1Q8N9T8 703 aaKnown RBP11.13□□□□□ -0.63
GPNMB-209ENST00000474157 PDS5BQ9NTI5 1447 aa11.12□□□□□ -0.63
GPNMB-209ENST00000474157 FAM9AQ8IZU1 332 aaPredicted RBP11.12□□□□□ -0.63
GPNMB-209ENST00000474157 ANO8Q9HCE9 1232 aaPredicted RBP11.12□□□□□ -0.63
GPNMB-209ENST00000474157 PRIM1P49642 420 aaKnown RBP11.11□□□□□ -0.63
GPNMB-209ENST00000474157 SMARCA2P51531 1590 aa11.11□□□□□ -0.63
GPNMB-209ENST00000474157 NEUROD2Q15784 382 aa11.1□□□□□ -0.63
GPNMB-209ENST00000474157 ZEB1P37275 1124 aaPredicted RBP11.09□□□□□ -0.63
GPNMB-209ENST00000474157 SLAIN1Q8ND83 568 aa11.09□□□□□ -0.63
GPNMB-209ENST00000474157 AK7Q96M32 723 aa11.09□□□□□ -0.63
GPNMB-209ENST00000474157 SCUBE2Q9NQ36 999 aa11.08□□□□□ -0.64
GPNMB-209ENST00000474157 HMGXB3Q12766 1538 aa11.06□□□□□ -0.64
GPNMB-209ENST00000474157 FCHSD2O94868 740 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms