RNA–Protein interactions for RNA: ENST00000473598.6

LMNA-213, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 2,015 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-213ENST00000473598 CDC42BPAQ5VT25 1732 aa22.26■■□□□ 1.15
LMNA-213ENST00000473598 FAM50AQ14320 339 aaKnown RBP22.25■■□□□ 1.15
LMNA-213ENST00000473598 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.25■■□□□ 1.159e-7■■□□□ 11.4
LMNA-213ENST00000473598 ABCA9Q8IUA7 1624 aa22.25■■□□□ 1.15
LMNA-213ENST00000473598 TTC37Q6PGP7 1564 aa22.24■■□□□ 1.15
LMNA-213ENST00000473598 GPATCH8Q9UKJ3 1502 aaKnown RBP22.24■■□□□ 1.15
LMNA-213ENST00000473598 CD109Q6YHK3 1445 aa22.24■■□□□ 1.15
LMNA-213ENST00000473598 PPRC1Q5VV67 1664 aaKnown RBP22.23■■□□□ 1.15
LMNA-213ENST00000473598 TCOF1Q13428 1488 aaKnown RBP22.23■■□□□ 1.15
LMNA-213ENST00000473598 PREX2Q70Z35 1606 aa22.17■■□□□ 1.14
LMNA-213ENST00000473598 MYO5CQ9NQX4 1742 aa22.17■■□□□ 1.14
LMNA-213ENST00000473598 CDC42BPBQ9Y5S2 1711 aa22.17■■□□□ 1.14
LMNA-213ENST00000473598 ITGAEP38570 1179 aa22.16■■□□□ 1.14
LMNA-213ENST00000473598 CFDP1Q9UEE9 299 aaPredicted RBP22.15■■□□□ 1.14
LMNA-213ENST00000473598 CAMSAP2Q08AD1 1489 aa22.11■■□□□ 1.13
LMNA-213ENST00000473598 TEX14Q8IWB6 1497 aa22.1■■□□□ 1.13
LMNA-213ENST00000473598 ZNF644Q9H582 1327 aaPredicted RBP22.09■■□□□ 1.13
LMNA-213ENST00000473598 PLCH2O75038 1416 aa22.08■■□□□ 1.13
LMNA-213ENST00000473598 DNMT1P26358 1616 aaKnown RBP22.08■■□□□ 1.12
LMNA-213ENST00000473598 PTPRKQ15262 1439 aa22.07■■□□□ 1.12
LMNA-213ENST00000473598 ZEB1P37275 1124 aaPredicted RBP22.06■■□□□ 1.12
LMNA-213ENST00000473598 FANCAO15360 1455 aa22.06■■□□□ 1.12
LMNA-213ENST00000473598 ARHGAP5Q13017 1502 aa22.06■■□□□ 1.12
LMNA-213ENST00000473598 ZNF777Q9ULD5 760 aaPredicted RBP22.06■■□□□ 1.12
LMNA-213ENST00000473598 COL17A1Q9UMD9 1497 aaPredicted RBP22.05■■□□□ 1.12
LMNA-213ENST00000473598 SAMD9LQ8IVG5 1584 aa22.04■■□□□ 1.12
LMNA-213ENST00000473598 DAPK1P53355 1430 aa22.03■■□□□ 1.12
LMNA-213ENST00000473598 ARAP3Q8WWN8 1544 aa22.03■■□□□ 1.12
LMNA-213ENST00000473598 KDM6BO15054 1643 aa22.02■■□□□ 1.12
LMNA-213ENST00000473598 NEO1Q92859 1461 aa22.01■■□□□ 1.11
LMNA-213ENST00000473598 CROCC2H7BZ55 1655 aa22.01■■□□□ 1.11
LMNA-213ENST00000473598 ABCC5O15440 1437 aa22■■□□□ 1.11
LMNA-213ENST00000473598 AKNAQ7Z591 1439 aa21.99■■□□□ 1.11
LMNA-213ENST00000473598 EFCAB2Q5VUJ9 269 aa21.99■■□□□ 1.11
LMNA-213ENST00000473598 SETD5Q9C0A6 1442 aa21.98■■□□□ 1.11
LMNA-213ENST00000473598 ARHGEF5Q12774 1597 aa21.97■■□□□ 1.11
LMNA-213ENST00000473598 CFAP74Q9C0B2 1584 aa21.96■■□□□ 1.11
LMNA-213ENST00000473598 PLEKHH2Q8IVE3 1493 aa21.95■■□□□ 1.1
LMNA-213ENST00000473598 HFM1A2PYH4 1435 aa21.95■■□□□ 1.1
LMNA-213ENST00000473598 ADGRL1O94910 1474 aa21.94■■□□□ 1.1
LMNA-213ENST00000473598 MBD5Q9P267 1494 aa21.94■■□□□ 1.1
LMNA-213ENST00000473598 RAPGEF3O95398 923 aa21.94■■□□□ 1.1
LMNA-213ENST00000473598 ADGBQ8N7X0 1667 aa21.94■■□□□ 1.1
LMNA-213ENST00000473598 GCC2Q8IWJ2 1684 aa21.94■■□□□ 1.1
LMNA-213ENST00000473598 SYCP2Q9BX26 1530 aa21.93■■□□□ 1.1
LMNA-213ENST00000473598 CHIC2Q9UKJ5 165 aa21.93■■□□□ 1.1
LMNA-213ENST00000473598 RAB3GAP2Q9H2M9 1393 aa21.93■■□□□ 1.1
LMNA-213ENST00000473598 KIAA1107Q9UPP5 1409 aa21.93■■□□□ 1.1
LMNA-213ENST00000473598 SCAPERQ9BY12 1400 aa21.92■■□□□ 1.1
LMNA-213ENST00000473598 ROCK1Q13464 1354 aa21.91■■□□□ 1.1
LMNA-213ENST00000473598 HNRNPMP52272 730 aaKnown RBP eCLIP21.91■■□□□ 1.1
LMNA-213ENST00000473598 ABCC1P33527 1531 aa21.91■■□□□ 1.1
LMNA-213ENST00000473598 NAIPQ13075 1403 aa21.91■■□□□ 1.1
LMNA-213ENST00000473598 SHANK2Q9UPX8 1470 aa21.91■■□□□ 1.1
LMNA-213ENST00000473598 CCDC141Q6ZP82 1450 aa21.9■■□□□ 1.1
LMNA-213ENST00000473598 RSPH4AQ5TD94 716 aa21.9■■□□□ 1.1
LMNA-213ENST00000473598 ARHGEF12Q9NZN5 1544 aa21.89■■□□□ 1.1
LMNA-213ENST00000473598 FRMPD1Q5SYB0 1578 aa21.89■■□□□ 1.1
LMNA-213ENST00000473598 DENND4BO75064 1496 aaPredicted RBP21.88■■□□□ 1.09
LMNA-213ENST00000473598 CCER1Q8TC90 406 aaPredicted RBP21.88■■□□□ 1.09
LMNA-213ENST00000473598 ADGRL2O95490 1459 aa21.88■■□□□ 1.09
LMNA-213ENST00000473598 RRP7BPQ9NSQ0 103 aa21.87■■□□□ 1.09
LMNA-213ENST00000473598 RICTORQ6R327 1708 aa21.86■■□□□ 1.09
LMNA-213ENST00000473598 C9orf84Q5VXU9 1444 aa21.85■■□□□ 1.09
LMNA-213ENST00000473598 POGZQ7Z3K3 1410 aa21.85■■□□□ 1.09
LMNA-213ENST00000473598 TSPY4P0CV99 314 aa21.84■■□□□ 1.09
LMNA-213ENST00000473598 TSPY10P0CW01 314 aa21.84■■□□□ 1.09
LMNA-213ENST00000473598 AFAP1Q8N556 730 aa21.84■■□□□ 1.09
LMNA-213ENST00000473598 NCOA1Q15788 1441 aa21.84■■□□□ 1.09
LMNA-213ENST00000473598 TRAPPC8Q9Y2L5 1435 aa21.84■■□□□ 1.09
LMNA-213ENST00000473598 MAST1Q9Y2H9 1570 aa21.84■■□□□ 1.09
LMNA-213ENST00000473598 ANKRD30AQ9BXX3 1397 aa21.81■■□□□ 1.08
LMNA-213ENST00000473598 DHX57Q6P158 1386 aaKnown RBP21.79■■□□□ 1.08
LMNA-213ENST00000473598 ZNF518AQ6AHZ1 1483 aa21.79■■□□□ 1.08
LMNA-213ENST00000473598 KDM5CP41229 1560 aa21.76■■□□□ 1.07
LMNA-213ENST00000473598 ZMYM4Q5VZL5 1548 aa21.75■■□□□ 1.07
LMNA-213ENST00000473598 PLXNC1O60486 1568 aa21.75■■□□□ 1.07
LMNA-213ENST00000473598 YEATS2Q9ULM3 1422 aa21.75■■□□□ 1.07
LMNA-213ENST00000473598 KIF15Q9NS87 1388 aa21.71■■□□□ 1.07
LMNA-213ENST00000473598 MYT1LQ9UL68 1186 aa21.71■■□□□ 1.07
LMNA-213ENST00000473598 RTEL1-TNFRSF6BF6WH68 1400 aa21.71■■□□□ 1.07
LMNA-213ENST00000473598 HECW2Q9P2P5 1572 aa21.7■■□□□ 1.06
LMNA-213ENST00000473598 INO80Q9ULG1 1556 aaPredicted RBP21.7■■□□□ 1.06
LMNA-213ENST00000473598 ACIN1Q9UKV3 1341 aaKnown RBP21.7■■□□□ 1.06
LMNA-213ENST00000473598 ZFYVE16Q7Z3T8 1539 aa21.69■■□□□ 1.06
LMNA-213ENST00000473598 ANKRD50Q9ULJ7 1429 aa21.69■■□□□ 1.06
LMNA-213ENST00000473598 SPAG9O60271 1321 aaKnown RBP21.68■■□□□ 1.06
LMNA-213ENST00000473598 ARHGEF40Q8TER5 1519 aa21.68■■□□□ 1.06
LMNA-213ENST00000473598 CLSPNQ9HAW4 1339 aa21.68■■□□□ 1.06
LMNA-213ENST00000473598 KIDINS220Q9ULH0 1771 aa21.67■■□□□ 1.06
LMNA-213ENST00000473598 MAGI2Q86UL8 1455 aa21.67■■□□□ 1.06
LMNA-213ENST00000473598 MLH3Q9UHC1 1453 aa21.67■■□□□ 1.06
LMNA-213ENST00000473598 ATP7AQ04656 1500 aa21.67■■□□□ 1.06
LMNA-213ENST00000473598 ABCA6Q8N139 1617 aa21.65■■□□□ 1.06
LMNA-213ENST00000473598 DUOX2Q9NRD8 1548 aa21.65■■□□□ 1.06
LMNA-213ENST00000473598 DIP2CQ9Y2E4 1556 aa21.63■■□□□ 1.05
LMNA-213ENST00000473598 SIGLEC1Q9BZZ2 1709 aa21.63■■□□□ 1.05
LMNA-213ENST00000473598 TRIM52Q96A61 297 aa21.62■■□□□ 1.05
LMNA-213ENST00000473598 ATP10AO60312 1499 aa21.59■■□□□ 1.05
LMNA-213ENST00000473598 ERBINQ96RT1 1412 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms