RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 DNAJC5Q9H3Z4 198 aa12.67□□□□□ -0.38
NPHP3-204ENST00000469232 ATP1B4Q9UN42 357 aaPredicted RBP12.66□□□□□ -0.38
NPHP3-204ENST00000469232 ABCB7O75027 752 aa12.66□□□□□ -0.38
NPHP3-204ENST00000469232 NCOA2Q15596 1464 aa12.65□□□□□ -0.38
NPHP3-204ENST00000469232 ABCC10Q5T3U5 1492 aa12.65□□□□□ -0.38
NPHP3-204ENST00000469232 SUPT6HQ7KZ85 1726 aaKnown RBP12.65□□□□□ -0.38
NPHP3-204ENST00000469232 MAPKBP1O60336 1514 aa12.65□□□□□ -0.38
NPHP3-204ENST00000469232 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
NPHP3-204ENST00000469232 CYB5RLQ6IPT4 315 aa12.63□□□□□ -0.39
NPHP3-204ENST00000469232 RRBP1Q9P2E9 1410 aaKnown RBP12.63□□□□□ -0.39
NPHP3-204ENST00000469232 WDR7Q9Y4E6 1490 aa12.63□□□□□ -0.39
NPHP3-204ENST00000469232 PHLDB1Q86UU1 1377 aa12.62□□□□□ -0.39
NPHP3-204ENST00000469232 ATF5Q9Y2D1 282 aaPredicted RBP12.62□□□□□ -0.39
NPHP3-204ENST00000469232 KIF14Q15058 1648 aa12.61□□□□□ -0.39
NPHP3-204ENST00000469232 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.61□□□□□ -0.39
NPHP3-204ENST00000469232 ASXL2Q76L83 1435 aa12.61□□□□□ -0.39
NPHP3-204ENST00000469232 MYOM3Q5VTT5 1437 aa12.59□□□□□ -0.39
NPHP3-204ENST00000469232 ARID3CA6NKF2 412 aa12.59□□□□□ -0.39
NPHP3-204ENST00000469232 PPARGC1BQ86YN6 1023 aaKnown RBP12.59□□□□□ -0.39
NPHP3-204ENST00000469232 MIA2Q96PC5 1412 aa12.59□□□□□ -0.39
NPHP3-204ENST00000469232 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.58□□□□□ -0.4
NPHP3-204ENST00000469232 GPATCH8Q9UKJ3 1502 aaKnown RBP12.58□□□□□ -0.4
NPHP3-204ENST00000469232 ARAP3Q8WWN8 1544 aa12.58□□□□□ -0.4
NPHP3-204ENST00000469232 NPM1P06748 294 aaKnown RBP eCLIP12.57□□□□□ -0.4
NPHP3-204ENST00000469232 TRIM26Q12899 539 aaPredicted RBP12.57□□□□□ -0.4
NPHP3-204ENST00000469232 TCOF1Q13428 1488 aaKnown RBP12.57□□□□□ -0.4
NPHP3-204ENST00000469232 FGD6Q6ZV73 1430 aa12.57□□□□□ -0.4
NPHP3-204ENST00000469232 ABCA9Q8IUA7 1624 aa12.56□□□□□ -0.4
NPHP3-204ENST00000469232 GLI2P10070 1586 aa12.56□□□□□ -0.4
NPHP3-204ENST00000469232 TTC37Q6PGP7 1564 aa12.55□□□□□ -0.4
NPHP3-204ENST00000469232 CDC42BPAQ5VT25 1732 aa12.55□□□□□ -0.4
NPHP3-204ENST00000469232 CCNB3Q8WWL7 1395 aa12.54□□□□□ -0.4
NPHP3-204ENST00000469232 ITSN2Q9NZM3 1697 aa12.54□□□□□ -0.4
NPHP3-204ENST00000469232 PREX2Q70Z35 1606 aa12.53□□□□□ -0.4
NPHP3-204ENST00000469232 PLCH2O75038 1416 aa12.52□□□□□ -0.4
NPHP3-204ENST00000469232 CDC42BPBQ9Y5S2 1711 aa12.51□□□□□ -0.41
NPHP3-204ENST00000469232 ATXN8OSP0DMR3 200 aa12.51□□□□□ -0.41
NPHP3-204ENST00000469232 PTPN23Q9H3S7 1636 aa12.5□□□□□ -0.41
NPHP3-204ENST00000469232 DIP2BQ9P265 1576 aa12.5□□□□□ -0.41
NPHP3-204ENST00000469232 POLA2Q14181 598 aa12.5□□□□□ -0.41
NPHP3-204ENST00000469232 MYO5CQ9NQX4 1742 aa12.49□□□□□ -0.41
NPHP3-204ENST00000469232 MAP3K4Q9Y6R4 1608 aa12.48□□□□□ -0.41
NPHP3-204ENST00000469232 KIAA1107Q9UPP5 1409 aa12.47□□□□□ -0.41
NPHP3-204ENST00000469232 KCNH8Q96L42 1107 aa12.47□□□□□ -0.41
NPHP3-204ENST00000469232 CAMSAP2Q08AD1 1489 aa12.45□□□□□ -0.42
NPHP3-204ENST00000469232 CFDP1Q9UEE9 299 aaPredicted RBP12.45□□□□□ -0.42
NPHP3-204ENST00000469232 ARHGEF5Q12774 1597 aa12.45□□□□□ -0.42
NPHP3-204ENST00000469232 SAMD9LQ8IVG5 1584 aa12.45□□□□□ -0.42
NPHP3-204ENST00000469232 PLEKHH2Q8IVE3 1493 aa12.45□□□□□ -0.42
NPHP3-204ENST00000469232 MBD5Q9P267 1494 aa12.45□□□□□ -0.42
NPHP3-204ENST00000469232 CD109Q6YHK3 1445 aa12.44□□□□□ -0.42
NPHP3-204ENST00000469232 KIF13AQ9H1H9 1805 aa12.43□□□□□ -0.42
NPHP3-204ENST00000469232 DNMT1P26358 1616 aaKnown RBP12.43□□□□□ -0.42
NPHP3-204ENST00000469232 EFCAB2Q5VUJ9 269 aa12.43□□□□□ -0.42
NPHP3-204ENST00000469232 NEO1Q92859 1461 aa12.43□□□□□ -0.42
NPHP3-204ENST00000469232 ARHGAP5Q13017 1502 aa12.42□□□□□ -0.42
NPHP3-204ENST00000469232 ABCC1P33527 1531 aa12.42□□□□□ -0.42
NPHP3-204ENST00000469232 ZNF644Q9H582 1327 aaPredicted RBP12.41□□□□□ -0.42
NPHP3-204ENST00000469232 ABCC5O15440 1437 aa12.41□□□□□ -0.42
NPHP3-204ENST00000469232 PTPRKQ15262 1439 aa12.41□□□□□ -0.42
NPHP3-204ENST00000469232 CFAP74Q9C0B2 1584 aa12.41□□□□□ -0.42
NPHP3-204ENST00000469232 FANCAO15360 1455 aa12.4□□□□□ -0.42
NPHP3-204ENST00000469232 RSPH4AQ5TD94 716 aa12.4□□□□□ -0.42
NPHP3-204ENST00000469232 PPRC1Q5VV67 1664 aaKnown RBP12.4□□□□□ -0.42
NPHP3-204ENST00000469232 AKNAQ7Z591 1439 aa12.4□□□□□ -0.42
NPHP3-204ENST00000469232 ARHGEF12Q9NZN5 1544 aa12.4□□□□□ -0.42
NPHP3-204ENST00000469232 SHANK2Q9UPX8 1470 aa12.4□□□□□ -0.42
NPHP3-204ENST00000469232 DAPK1P53355 1430 aa12.4□□□□□ -0.42
NPHP3-204ENST00000469232 PCGF6Q9BYE7 350 aa12.39□□□□□ -0.43
NPHP3-204ENST00000469232 MAST1Q9Y2H9 1570 aa12.39□□□□□ -0.43
NPHP3-204ENST00000469232 ADGRL2O95490 1459 aa12.38□□□□□ -0.43
NPHP3-204ENST00000469232 ROCK1Q13464 1354 aa12.38□□□□□ -0.43
NPHP3-204ENST00000469232 CROCC2H7BZ55 1655 aa12.38□□□□□ -0.43
NPHP3-204ENST00000469232 FAM69CQ0P6D2 419 aa12.37□□□□□ -0.43
NPHP3-204ENST00000469232 FAM50AQ14320 339 aaKnown RBP12.37□□□□□ -0.43
NPHP3-204ENST00000469232 SYCP2Q9BX26 1530 aa12.37□□□□□ -0.43
NPHP3-204ENST00000469232 CCDC141Q6ZP82 1450 aa12.36□□□□□ -0.43
NPHP3-204ENST00000469232 TEX14Q8IWB6 1497 aa12.35□□□□□ -0.43
NPHP3-204ENST00000469232 ADGRL1O94910 1474 aa12.34□□□□□ -0.43
NPHP3-204ENST00000469232 HFM1A2PYH4 1435 aa12.34□□□□□ -0.43
NPHP3-204ENST00000469232 KDM5CP41229 1560 aa12.33□□□□□ -0.43
NPHP3-204ENST00000469232 RTEL1-TNFRSF6BF6WH68 1400 aa12.33□□□□□ -0.43
NPHP3-204ENST00000469232 TRAPPC8Q9Y2L5 1435 aa12.33□□□□□ -0.43
NPHP3-204ENST00000469232 HRCP23327 699 aa12.33□□□□□ -0.43
NPHP3-204ENST00000469232 NCOA1Q15788 1441 aa12.33□□□□□ -0.44
NPHP3-204ENST00000469232 SCAPERQ9BY12 1400 aa12.33□□□□□ -0.44
NPHP3-204ENST00000469232 NAIPQ13075 1403 aa12.32□□□□□ -0.44
NPHP3-204ENST00000469232 POGZQ7Z3K3 1410 aa12.32□□□□□ -0.44
NPHP3-204ENST00000469232 HNRNPMP52272 730 aaKnown RBP eCLIP12.32□□□□□ -0.44
NPHP3-204ENST00000469232 ZNF777Q9ULD5 760 aaPredicted RBP12.32□□□□□ -0.44
NPHP3-204ENST00000469232 ADGBQ8N7X0 1667 aa12.32□□□□□ -0.44
NPHP3-204ENST00000469232 C9orf84Q5VXU9 1444 aa12.31□□□□□ -0.44
NPHP3-204ENST00000469232 PLXNC1O60486 1568 aa12.31□□□□□ -0.44
NPHP3-204ENST00000469232 GCC2Q8IWJ2 1684 aa12.3□□□□□ -0.44
NPHP3-204ENST00000469232 INO80Q9ULG1 1556 aaPredicted RBP12.3□□□□□ -0.44
NPHP3-204ENST00000469232 ZNF518AQ6AHZ1 1483 aa12.3□□□□□ -0.44
NPHP3-204ENST00000469232 MLH3Q9UHC1 1453 aa12.3□□□□□ -0.44
NPHP3-204ENST00000469232 ZMYM4Q5VZL5 1548 aa12.29□□□□□ -0.44
NPHP3-204ENST00000469232 ZFYVE16Q7Z3T8 1539 aa12.29□□□□□ -0.44
NPHP3-204ENST00000469232 SETD5Q9C0A6 1442 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms