RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 SCAPERQ9BY12 1400 aa31.43■■■□□ 2.62
NPHP4-206ENST00000468253 LRRC9Q6ZRR7 1453 aa31.41■■■□□ 2.62
NPHP4-206ENST00000468253 KANK4Q5T7N3 995 aaPredicted RBP31.41■■■□□ 2.62
NPHP4-206ENST00000468253 CFDP1Q9UEE9 299 aaPredicted RBP31.41■■■□□ 2.62
NPHP4-206ENST00000468253 MYO5CQ9NQX4 1742 aa31.41■■■□□ 2.62
NPHP4-206ENST00000468253 ARHGAP5Q13017 1502 aa31.4■■■□□ 2.62
NPHP4-206ENST00000468253 ADGRL1O94910 1474 aa31.4■■■□□ 2.62
NPHP4-206ENST00000468253 ZNF777Q9ULD5 760 aaPredicted RBP31.32■■■□□ 2.6
NPHP4-206ENST00000468253 NCOA2Q15596 1464 aa31.32■■■□□ 2.6
NPHP4-206ENST00000468253 PREX2Q70Z35 1606 aa31.31■■■□□ 2.6
NPHP4-206ENST00000468253 POGZQ7Z3K3 1410 aa31.3■■■□□ 2.6
NPHP4-206ENST00000468253 CDC42BPBQ9Y5S2 1711 aa31.29■■■□□ 2.6
NPHP4-206ENST00000468253 AFAP1Q8N556 730 aa31.29■■■□□ 2.6
NPHP4-206ENST00000468253 KIAA1107Q9UPP5 1409 aa31.28■■■□□ 2.6
NPHP4-206ENST00000468253 MAGI2Q86UL8 1455 aa31.27■■■□□ 2.6
NPHP4-206ENST00000468253 CDC42BPAQ5VT25 1732 aa31.26■■■□□ 2.59
NPHP4-206ENST00000468253 FRMPD1Q5SYB0 1578 aa31.25■■■□□ 2.59
NPHP4-206ENST00000468253 ZNF518AQ6AHZ1 1483 aa31.24■■■□□ 2.59
NPHP4-206ENST00000468253 PLEKHH2Q8IVE3 1493 aa31.24■■■□□ 2.59
NPHP4-206ENST00000468253 SUPT6HQ7KZ85 1726 aaKnown RBP31.24■■■□□ 2.59
NPHP4-206ENST00000468253 HNRNPMP52272 730 aaKnown RBP eCLIP31.22■■■□□ 2.59
NPHP4-206ENST00000468253 RICTORQ6R327 1708 aa31.21■■■□□ 2.59
NPHP4-206ENST00000468253 ARHGEF12Q9NZN5 1544 aa31.21■■■□□ 2.59
NPHP4-206ENST00000468253 ZMYM4Q5VZL5 1548 aa31.2■■■□□ 2.59
NPHP4-206ENST00000468253 RSPH4AQ5TD94 716 aa31.19■■■□□ 2.58
NPHP4-206ENST00000468253 ZNF644Q9H582 1327 aaPredicted RBP31.19■■■□□ 2.58
NPHP4-206ENST00000468253 TRAPPC8Q9Y2L5 1435 aa31.18■■■□□ 2.58
NPHP4-206ENST00000468253 ABCC1P33527 1531 aa31.18■■■□□ 2.58
NPHP4-206ENST00000468253 KDM4FA0A1W2PPD8 638 aa31.15■■■□□ 2.58
NPHP4-206ENST00000468253 MLH3Q9UHC1 1453 aa31.14■■■□□ 2.57
NPHP4-206ENST00000468253 SAMD9LQ8IVG5 1584 aa31.13■■■□□ 2.57
NPHP4-206ENST00000468253 MIA2Q96PC5 1412 aa31.13■■■□□ 2.57
NPHP4-206ENST00000468253 KDM5CP41229 1560 aa31.11■■■□□ 2.57
NPHP4-206ENST00000468253 ITSN2Q9NZM3 1697 aa31.1■■■□□ 2.57
NPHP4-206ENST00000468253 MYOM3Q5VTT5 1437 aa31.1■■■□□ 2.57
NPHP4-206ENST00000468253 YEATS2Q9ULM3 1422 aa31.1■■■□□ 2.57
NPHP4-206ENST00000468253 MYT1LQ9UL68 1186 aa31.1■■■□□ 2.57
NPHP4-206ENST00000468253 SPAG9O60271 1321 aaKnown RBP31.09■■■□□ 2.57
NPHP4-206ENST00000468253 ZFYVE16Q7Z3T8 1539 aa31.08■■■□□ 2.57
NPHP4-206ENST00000468253 MBD5Q9P267 1494 aa31.08■■■□□ 2.57
NPHP4-206ENST00000468253 ATP10AO60312 1499 aa31.08■■■□□ 2.57
NPHP4-206ENST00000468253 SYCP2Q9BX26 1530 aa31.05■■■□□ 2.56
NPHP4-206ENST00000468253 ARHGEF40Q8TER5 1519 aa31.04■■■□□ 2.56
NPHP4-206ENST00000468253 ARID4BQ4LE39 1312 aaPredicted RBP31.04■■■□□ 2.56
NPHP4-206ENST00000468253 AEBP2Q6ZN18 517 aaPredicted RBP31.03■■■□□ 2.56
NPHP4-206ENST00000468253 CAMSAP2Q08AD1 1489 aa31■■■□□ 2.55
NPHP4-206ENST00000468253 TSPY4P0CV99 314 aa30.99■■■□□ 2.55
NPHP4-206ENST00000468253 TSPY10P0CW01 314 aa30.99■■■□□ 2.55
NPHP4-206ENST00000468253 RTEL1-TNFRSF6BF6WH68 1400 aa30.98■■■□□ 2.55
NPHP4-206ENST00000468253 C9orf84Q5VXU9 1444 aa30.98■■■□□ 2.55
NPHP4-206ENST00000468253 HECW2Q9P2P5 1572 aa30.96■■■□□ 2.55
NPHP4-206ENST00000468253 FGD6Q6ZV73 1430 aa30.92■■■□□ 2.54
NPHP4-206ENST00000468253 CCDC141Q6ZP82 1450 aa30.92■■■□□ 2.54
NPHP4-206ENST00000468253 ARHGEF5Q12774 1597 aa30.89■■■□□ 2.54
NPHP4-206ENST00000468253 REREQ9P2R6 1566 aa30.88■■■□□ 2.53
NPHP4-206ENST00000468253 KIDINS220Q9ULH0 1771 aa30.87■■■□□ 2.53
NPHP4-206ENST00000468253 DIP2CQ9Y2E4 1556 aa30.87■■■□□ 2.53
NPHP4-206ENST00000468253 ATP7AQ04656 1500 aa30.85■■■□□ 2.53
NPHP4-206ENST00000468253 TCOF1Q13428 1488 aaKnown RBP30.85■■■□□ 2.53
NPHP4-206ENST00000468253 PPARGC1BQ86YN6 1023 aaKnown RBP30.83■■■□□ 2.53
NPHP4-206ENST00000468253 AGLP35573 1532 aa30.83■■■□□ 2.53
NPHP4-206ENST00000468253 MLECQ14165 292 aa30.81■■■□□ 2.52
NPHP4-206ENST00000468253 ABCA6Q8N139 1617 aa30.8■■■□□ 2.52
NPHP4-206ENST00000468253 INO80Q9ULG1 1556 aaPredicted RBP30.8■■■□□ 2.52
NPHP4-206ENST00000468253 DHX29Q7Z478 1369 aaKnown RBP30.79■■■□□ 2.52
NPHP4-206ENST00000468253 A2MP01023 1474 aa30.79■■■□□ 2.52
NPHP4-206ENST00000468253 PTPN23Q9H3S7 1636 aa30.79■■■□□ 2.52
NPHP4-206ENST00000468253 ABCC5O15440 1437 aa30.78■■■□□ 2.52
NPHP4-206ENST00000468253 BCORL1Q5H9F3 1711 aa30.77■■■□□ 2.52
NPHP4-206ENST00000468253 ADAMTSL3P82987 1691 aa30.77■■■□□ 2.52
NPHP4-206ENST00000468253 FAM50AQ14320 339 aaKnown RBP30.76■■■□□ 2.51
NPHP4-206ENST00000468253 PPP6R1Q9UPN7 881 aa30.74■■■□□ 2.51
NPHP4-206ENST00000468253 SIGLEC1Q9BZZ2 1709 aa30.73■■■□□ 2.51
NPHP4-206ENST00000468253 DAPK1P53355 1430 aa30.71■■■□□ 2.51
NPHP4-206ENST00000468253 MAST1Q9Y2H9 1570 aa30.71■■■□□ 2.51
NPHP4-206ENST00000468253 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.7■■■□□ 2.51
NPHP4-206ENST00000468253 PTPRMP28827 1452 aa30.68■■■□□ 2.5
NPHP4-206ENST00000468253 SHANK2Q9UPX8 1470 aa30.68■■■□□ 2.5
NPHP4-206ENST00000468253 ESF1Q9H501 851 aaKnown RBP30.67■■■□□ 2.5
NPHP4-206ENST00000468253 PLXNC1O60486 1568 aa30.66■■■□□ 2.5
NPHP4-206ENST00000468253 KIF3BO15066 747 aa30.64■■■□□ 2.5
NPHP4-206ENST00000468253 ADGBQ8N7X0 1667 aa30.64■■■□□ 2.5
NPHP4-206ENST00000468253 GGT6Q6P531 493 aa30.63■■■□□ 2.49
NPHP4-206ENST00000468253 RRP7BPQ9NSQ0 103 aa30.61■■■□□ 2.49
NPHP4-206ENST00000468253 CHIC2Q9UKJ5 165 aa30.61■■■□□ 2.49
NPHP4-206ENST00000468253 ANKRD30AQ9BXX3 1397 aa30.61■■■□□ 2.49
NPHP4-206ENST00000468253 DNMT1P26358 1616 aaKnown RBP30.61■■■□□ 2.49
NPHP4-206ENST00000468253 MADDQ8WXG6 1647 aa30.61■■■□□ 2.49
NPHP4-206ENST00000468253 CNTLNQ9NXG0 1405 aa30.59■■■□□ 2.49
NPHP4-206ENST00000468253 NCOA1Q15788 1441 aa30.58■■■□□ 2.49
NPHP4-206ENST00000468253 KIF15Q9NS87 1388 aa30.58■■■□□ 2.49
NPHP4-206ENST00000468253 RRBP1Q9P2E9 1410 aaKnown RBP30.56■■■□□ 2.48
NPHP4-206ENST00000468253 DUOX2Q9NRD8 1548 aa30.53■■■□□ 2.48
NPHP4-206ENST00000468253 ADGRL2O95490 1459 aa30.51■■■□□ 2.48
NPHP4-206ENST00000468253 CEBPAP49715 358 aaPredicted RBP30.5■■■□□ 2.47
NPHP4-206ENST00000468253 PTPRKQ15262 1439 aa30.49■■■□□ 2.47
NPHP4-206ENST00000468253 ROCK1Q13464 1354 aa30.49■■■□□ 2.47
NPHP4-206ENST00000468253 ZMYM3Q14202 1370 aa30.49■■■□□ 2.47
NPHP4-206ENST00000468253 RIMS1Q86UR5 1692 aaKnown RBP30.49■■■□□ 2.47
NPHP4-206ENST00000468253 ERBINQ96RT1 1412 aa30.47■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms