RNA–Protein interactions for RNA: ENST00000466963.1

CXXC4-202, Transcript of CXXC finger protein 4, humanhuman

TSL 1 (best)

Gene CXXC4, Length 3,130 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXXC4-202ENST00000466963 SPATA31D1Q6ZQQ2 1576 aa9.79□□□□□ -0.84
CXXC4-202ENST00000466963 PLCH2O75038 1416 aa9.78□□□□□ -0.84
CXXC4-202ENST00000466963 KDM5CP41229 1560 aa9.78□□□□□ -0.84
CXXC4-202ENST00000466963 ZNF518AQ6AHZ1 1483 aa9.78□□□□□ -0.84
CXXC4-202ENST00000466963 UHRF1BP1Q6BDS2 1440 aa9.78□□□□□ -0.84
CXXC4-202ENST00000466963 PLEKHD1A6NEE1 506 aa9.77□□□□□ -0.85
CXXC4-202ENST00000466963 PPP6R1Q9UPN7 881 aa9.77□□□□□ -0.85
CXXC4-202ENST00000466963 MYO5CQ9NQX4 1742 aa9.76□□□□□ -0.85
CXXC4-202ENST00000466963 NUP153P49790 1475 aaKnown RBP9.76□□□□□ -0.85
CXXC4-202ENST00000466963 MLH3Q9UHC1 1453 aa9.75□□□□□ -0.85
CXXC4-202ENST00000466963 CDK11AQ9UQ88 783 aaPredicted RBP9.75□□□□□ -0.85
CXXC4-202ENST00000466963 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.75□□□□□ -0.85
CXXC4-202ENST00000466963 PLA2R1Q13018 1463 aa9.75□□□□□ -0.85
CXXC4-202ENST00000466963 HECW1Q76N89 1606 aa9.74□□□□□ -0.85
CXXC4-202ENST00000466963 FMN1Q68DA7 1419 aa9.73□□□□□ -0.85
CXXC4-202ENST00000466963 ZNF142P52746 1687 aaPredicted RBP9.72□□□□□ -0.85
CXXC4-202ENST00000466963 KCNH8Q96L42 1107 aa9.72□□□□□ -0.85
CXXC4-202ENST00000466963 CLIP1P30622 1438 aa9.72□□□□□ -0.85
CXXC4-202ENST00000466963 ARID4BQ4LE39 1312 aaPredicted RBP9.72□□□□□ -0.85
CXXC4-202ENST00000466963 TRAPPC8Q9Y2L5 1435 aa9.71□□□□□ -0.85
CXXC4-202ENST00000466963 KIF14Q15058 1648 aa9.71□□□□□ -0.85
CXXC4-202ENST00000466963 EFCAB2Q5VUJ9 269 aa9.71□□□□□ -0.85
CXXC4-202ENST00000466963 STRCQ7RTU9 1775 aa9.7□□□□□ -0.86
CXXC4-202ENST00000466963 PLEKHH2Q8IVE3 1493 aa9.7□□□□□ -0.86
CXXC4-202ENST00000466963 LTBP4Q8N2S1 1624 aa9.69□□□□□ -0.86
CXXC4-202ENST00000466963 PKD2Q13563 968 aa9.68□□□□□ -0.86
CXXC4-202ENST00000466963 NCOA1Q15788 1441 aa9.68□□□□□ -0.86
CXXC4-202ENST00000466963 CCDC18Q5T9S5 1454 aa9.68□□□□□ -0.86
CXXC4-202ENST00000466963 CPS1P31327 1500 aa9.68□□□□□ -0.86
CXXC4-202ENST00000466963 SCAPERQ9BY12 1400 aa9.67□□□□□ -0.86
CXXC4-202ENST00000466963 DIP2CQ9Y2E4 1556 aa9.66□□□□□ -0.86
CXXC4-202ENST00000466963 DISP3Q9P2K9 1392 aa9.65□□□□□ -0.86
CXXC4-202ENST00000466963 C3P01024 1663 aa9.65□□□□□ -0.86
CXXC4-202ENST00000466963 TROQ12816 1431 aaPredicted RBP9.65□□□□□ -0.86
CXXC4-202ENST00000466963 RAPGEF3O95398 923 aa9.65□□□□□ -0.87
CXXC4-202ENST00000466963 PREX2Q70Z35 1606 aa9.64□□□□□ -0.87
CXXC4-202ENST00000466963 ITSN2Q9NZM3 1697 aa9.64□□□□□ -0.87
CXXC4-202ENST00000466963 CSRNP3Q8WYN3 585 aa9.63□□□□□ -0.87
CXXC4-202ENST00000466963 TTBK1Q5TCY1 1321 aaPredicted RBP9.63□□□□□ -0.87
CXXC4-202ENST00000466963 ABCC1P33527 1531 aa9.62□□□□□ -0.87
CXXC4-202ENST00000466963 KIAA1107Q9UPP5 1409 aa9.62□□□□□ -0.87
CXXC4-202ENST00000466963 ESF1Q9H501 851 aaKnown RBP9.61□□□□□ -0.87
CXXC4-202ENST00000466963 TCOF1Q13428 1488 aaKnown RBP9.6□□□□□ -0.87
CXXC4-202ENST00000466963 PTPRKQ15262 1439 aa9.6□□□□□ -0.87
CXXC4-202ENST00000466963 ADGBQ8N7X0 1667 aa9.59□□□□□ -0.87
CXXC4-202ENST00000466963 ARHGAP5Q13017 1502 aa9.59□□□□□ -0.87
CXXC4-202ENST00000466963 SIGLEC1Q9BZZ2 1709 aa9.58□□□□□ -0.88
CXXC4-202ENST00000466963 DEPDC5O75140 1603 aa9.58□□□□□ -0.88
CXXC4-202ENST00000466963 ABCA6Q8N139 1617 aa9.58□□□□□ -0.88
CXXC4-202ENST00000466963 SYNMO15061 1565 aa9.58□□□□□ -0.88
CXXC4-202ENST00000466963 PLXNC1O60486 1568 aa9.58□□□□□ -0.88
CXXC4-202ENST00000466963 RTEL1-TNFRSF6BF6WH68 1400 aa9.56□□□□□ -0.88
CXXC4-202ENST00000466963 A2ML1A8K2U0 1454 aa9.56□□□□□ -0.88
CXXC4-202ENST00000466963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.56□□□□□ -0.88
CXXC4-202ENST00000466963 HNRNPUL2Q1KMD3 747 aaKnown RBP9.56□□□□□ -0.88
CXXC4-202ENST00000466963 MYO3AQ8NEV4 1616 aa9.56□□□□□ -0.88
CXXC4-202ENST00000466963 CAMSAP1Q5T5Y3 1602 aa9.55□□□□□ -0.88
CXXC4-202ENST00000466963 CEP170BQ9Y4F5 1589 aaPredicted RBP9.55□□□□□ -0.88
CXXC4-202ENST00000466963 POLR1AO95602 1720 aaPredicted RBP9.55□□□□□ -0.88
CXXC4-202ENST00000466963 CDC42BPBQ9Y5S2 1711 aa9.54□□□□□ -0.88
CXXC4-202ENST00000466963 KIDINS220Q9ULH0 1771 aa9.54□□□□□ -0.88
CXXC4-202ENST00000466963 INO80Q9ULG1 1556 aaPredicted RBP9.54□□□□□ -0.88
CXXC4-202ENST00000466963 NLRP1Q9C000 1473 aa9.54□□□□□ -0.88
CXXC4-202ENST00000466963 CASKIN1Q8WXD9 1431 aa9.54□□□□□ -0.88
CXXC4-202ENST00000466963 MED14O60244 1454 aa9.53□□□□□ -0.88
CXXC4-202ENST00000466963 SUPT6HQ7KZ85 1726 aaKnown RBP9.53□□□□□ -0.88
CXXC4-202ENST00000466963 RSPH4AQ5TD94 716 aa9.53□□□□□ -0.88
CXXC4-202ENST00000466963 FYCO1Q9BQS8 1478 aa9.53□□□□□ -0.88
CXXC4-202ENST00000466963 SAMD9LQ8IVG5 1584 aa9.52□□□□□ -0.89
CXXC4-202ENST00000466963 ZC3H13Q5T200 1668 aaKnown RBP9.52□□□□□ -0.89
CXXC4-202ENST00000466963 TOM1O60784 492 aa9.51□□□□□ -0.89
CXXC4-202ENST00000466963 HSPA2P54652 639 aa9.51□□□□□ -0.89
CXXC4-202ENST00000466963 MED1Q15648 1581 aaPredicted RBP9.51□□□□□ -0.89
CXXC4-202ENST00000466963 ATP7AQ04656 1500 aa9.5□□□□□ -0.89
CXXC4-202ENST00000466963 RNF17Q9BXT8 1623 aaKnown RBP9.49□□□□□ -0.89
CXXC4-202ENST00000466963 A2MP01023 1474 aa9.49□□□□□ -0.89
CXXC4-202ENST00000466963 ZMYM3Q14202 1370 aa9.48□□□□□ -0.89
CXXC4-202ENST00000466963 CDC42BPAQ5VT25 1732 aa9.48□□□□□ -0.89
CXXC4-202ENST00000466963 CDK13Q14004 1512 aaKnown RBP9.48□□□□□ -0.89
CXXC4-202ENST00000466963 KDM5AP29375 1690 aaKnown RBP9.48□□□□□ -0.89
CXXC4-202ENST00000466963 ILDR2Q71H61 639 aa9.47□□□□□ -0.89
CXXC4-202ENST00000466963 PZPP20742 1482 aa9.47□□□□□ -0.89
CXXC4-202ENST00000466963 LRRC9Q6ZRR7 1453 aa9.47□□□□□ -0.89
CXXC4-202ENST00000466963 KDM5DQ9BY66 1539 aa9.46□□□□□ -0.89
CXXC4-202ENST00000466963 SHANK2Q9UPX8 1470 aa9.46□□□□□ -0.89
CXXC4-202ENST00000466963 DNMT1P26358 1616 aaKnown RBP9.46□□□□□ -0.9
CXXC4-202ENST00000466963 EIF2AK4Q9P2K8 1649 aaKnown RBP9.46□□□□□ -0.9
CXXC4-202ENST00000466963 ARHGAP35Q9NRY4 1499 aa9.45□□□□□ -0.9
CXXC4-202ENST00000466963 CLTCQ00610 1675 aaKnown RBP9.45□□□□□ -0.9
CXXC4-202ENST00000466963 SPAG9O60271 1321 aaKnown RBP9.43□□□□□ -0.9
CXXC4-202ENST00000466963 CAMSAP2Q08AD1 1489 aa9.43□□□□□ -0.9
CXXC4-202ENST00000466963 UBAP1LF5GYI3 381 aa9.43□□□□□ -0.9
CXXC4-202ENST00000466963 ARHGEF5Q12774 1597 aa9.42□□□□□ -0.9
CXXC4-202ENST00000466963 VWDEQ8N2E2 1590 aa9.42□□□□□ -0.9
CXXC4-202ENST00000466963 THEMISQ8N1K5 641 aaPredicted RBP9.42□□□□□ -0.9
CXXC4-202ENST00000466963 MAST1Q9Y2H9 1570 aa9.42□□□□□ -0.9
CXXC4-202ENST00000466963 DHX29Q7Z478 1369 aaKnown RBP9.41□□□□□ -0.9
CXXC4-202ENST00000466963 P3H3Q8IVL6 736 aa9.41□□□□□ -0.9
CXXC4-202ENST00000466963 EHBP1L1Q8N3D4 1523 aa9.41□□□□□ -0.9
CXXC4-202ENST00000466963 NEURL4Q96JN8 1562 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms