RNA–Protein interactions for RNA: ENST00000465408.1

UBE4B-205, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 355 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-205ENST00000465408 ZNF335Q9H4Z2 1342 aaPredicted RBP12.91□□□□□ -0.34
UBE4B-205ENST00000465408 IQGAP2Q13576 1575 aa12.9□□□□□ -0.34
UBE4B-205ENST00000465408 PIP4K2BP78356 416 aa12.9□□□□□ -0.34
UBE4B-205ENST00000465408 CARMIL1Q5VZK9 1371 aa12.89□□□□□ -0.35
UBE4B-205ENST00000465408 HRCP23327 699 aa12.88□□□□□ -0.35
UBE4B-205ENST00000465408 NEO1Q92859 1461 aa12.88□□□□□ -0.35
UBE4B-205ENST00000465408 NCOA1Q15788 1441 aa12.87□□□□□ -0.35
UBE4B-205ENST00000465408 VPS8Q8N3P4 1428 aa12.87□□□□□ -0.35
UBE4B-205ENST00000465408 ARHGEF12Q9NZN5 1544 aa12.86□□□□□ -0.35
UBE4B-205ENST00000465408 AKNAQ7Z591 1439 aa12.86□□□□□ -0.35
UBE4B-205ENST00000465408 ABCA9Q8IUA7 1624 aa12.84□□□□□ -0.35
UBE4B-205ENST00000465408 RICTORQ6R327 1708 aa12.83□□□□□ -0.36
UBE4B-205ENST00000465408 KIAA0556O60303 1618 aa12.83□□□□□ -0.36
UBE4B-205ENST00000465408 SETD1AO15047 1707 aaKnown RBP12.82□□□□□ -0.36
UBE4B-205ENST00000465408 SETD1BQ9UPS6 1966 aaKnown RBP12.8□□□□□ -0.36
UBE4B-205ENST00000465408 ZFYVE16Q7Z3T8 1539 aa12.8□□□□□ -0.36
UBE4B-205ENST00000465408 POTEAQ6S8J7 498 aa12.8□□□□□ -0.36
UBE4B-205ENST00000465408 DENND4BO75064 1496 aaPredicted RBP12.79□□□□□ -0.36
UBE4B-205ENST00000465408 FHOD3Q2V2M9 1422 aa12.79□□□□□ -0.36
UBE4B-205ENST00000465408 ARHGAP35Q9NRY4 1499 aa12.78□□□□□ -0.36
UBE4B-205ENST00000465408 UGGT2Q9NYU1 1516 aa12.78□□□□□ -0.36
UBE4B-205ENST00000465408 ABCA8O94911 1581 aa12.78□□□□□ -0.36
UBE4B-205ENST00000465408 TOM1O60784 492 aa12.77□□□□□ -0.37
UBE4B-205ENST00000465408 ZMYM4Q5VZL5 1548 aa12.77□□□□□ -0.37
UBE4B-205ENST00000465408 SENP3Q9H4L4 574 aaPredicted RBP12.76□□□□□ -0.37
UBE4B-205ENST00000465408 EFCAB5A4FU69 1503 aa12.76□□□□□ -0.37
UBE4B-205ENST00000465408 CAMSAP1Q5T5Y3 1602 aa12.75□□□□□ -0.37
UBE4B-205ENST00000465408 NCKAP5LQ9HCH0 1330 aa12.75□□□□□ -0.37
UBE4B-205ENST00000465408 APLP2Q06481 763 aa12.74□□□□□ -0.37
UBE4B-205ENST00000465408 ALKQ9UM73 1620 aa12.73□□□□□ -0.37
UBE4B-205ENST00000465408 ARID3CA6NKF2 412 aa12.73□□□□□ -0.37
UBE4B-205ENST00000465408 C3P01024 1663 aa12.7□□□□□ -0.38
UBE4B-205ENST00000465408 UPF1Q92900 1129 aaKnown RBP eCLIP12.7□□□□□ -0.38
UBE4B-205ENST00000465408 MAGI2Q86UL8 1455 aa12.7□□□□□ -0.38
UBE4B-205ENST00000465408 HECW1Q76N89 1606 aa12.7□□□□□ -0.38
UBE4B-205ENST00000465408 ATP10BO94823 1461 aa12.68□□□□□ -0.38
UBE4B-205ENST00000465408 P3H3Q8IVL6 736 aa12.68□□□□□ -0.38
UBE4B-205ENST00000465408 TRAPPC8Q9Y2L5 1435 aa12.68□□□□□ -0.38
UBE4B-205ENST00000465408 C9orf84Q5VXU9 1444 aa12.66□□□□□ -0.38
UBE4B-205ENST00000465408 ATP10AO60312 1499 aa12.65□□□□□ -0.38
UBE4B-205ENST00000465408 CTTNBP2Q8WZ74 1663 aa12.65□□□□□ -0.38
UBE4B-205ENST00000465408 KANK4Q5T7N3 995 aaPredicted RBP12.64□□□□□ -0.39
UBE4B-205ENST00000465408 PTPRKQ15262 1439 aa12.62□□□□□ -0.39
UBE4B-205ENST00000465408 CPS1P31327 1500 aa12.62□□□□□ -0.39
UBE4B-205ENST00000465408 PPP6R1Q9UPN7 881 aa12.62□□□□□ -0.39
UBE4B-205ENST00000465408 TCOF1Q13428 1488 aaKnown RBP12.61□□□□□ -0.39
UBE4B-205ENST00000465408 PKD2Q13563 968 aa12.61□□□□□ -0.39
UBE4B-205ENST00000465408 CFAP74Q9C0B2 1584 aa12.6□□□□□ -0.39
UBE4B-205ENST00000465408 PLA2R1Q13018 1463 aa12.59□□□□□ -0.39
UBE4B-205ENST00000465408 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.59□□□□□ -0.39
UBE4B-205ENST00000465408 ZEB1P37275 1124 aaPredicted RBP12.58□□□□□ -0.4
UBE4B-205ENST00000465408 TIAM1Q13009 1591 aa12.57□□□□□ -0.4
UBE4B-205ENST00000465408 HNRNPUL2Q1KMD3 747 aaKnown RBP12.57□□□□□ -0.4
UBE4B-205ENST00000465408 ATP1B4Q9UN42 357 aaPredicted RBP12.57□□□□□ -0.4
UBE4B-205ENST00000465408 SHANK2Q9UPX8 1470 aa12.57□□□□□ -0.4
UBE4B-205ENST00000465408 SAMD9Q5K651 1589 aa12.56□□□□□ -0.4
UBE4B-205ENST00000465408 MAP3K1Q13233 1512 aa12.54□□□□□ -0.4
UBE4B-205ENST00000465408 CCER1Q8TC90 406 aaPredicted RBP12.54□□□□□ -0.4
UBE4B-205ENST00000465408 CASKIN1Q8WXD9 1431 aa12.54□□□□□ -0.4
UBE4B-205ENST00000465408 FYCO1Q9BQS8 1478 aa12.53□□□□□ -0.4
UBE4B-205ENST00000465408 SCAPERQ9BY12 1400 aa12.53□□□□□ -0.4
UBE4B-205ENST00000465408 ZNF142P52746 1687 aaPredicted RBP12.52□□□□□ -0.4
UBE4B-205ENST00000465408 NPATQ14207 1427 aa12.52□□□□□ -0.41
UBE4B-205ENST00000465408 FMN1Q68DA7 1419 aa12.52□□□□□ -0.41
UBE4B-205ENST00000465408 LRRC9Q6ZRR7 1453 aa12.52□□□□□ -0.41
UBE4B-205ENST00000465408 IFFO2Q5TF58 517 aa12.51□□□□□ -0.41
UBE4B-205ENST00000465408 SUPT6HQ7KZ85 1726 aaKnown RBP12.51□□□□□ -0.41
UBE4B-205ENST00000465408 ESF1Q9H501 851 aaKnown RBP12.5□□□□□ -0.41
UBE4B-205ENST00000465408 MYO3AQ8NEV4 1616 aa12.5□□□□□ -0.41
UBE4B-205ENST00000465408 CEP170BQ9Y4F5 1589 aaPredicted RBP12.49□□□□□ -0.41
UBE4B-205ENST00000465408 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.49□□□□□ -0.41
UBE4B-205ENST00000465408 RRBP1Q9P2E9 1410 aaKnown RBP12.49□□□□□ -0.41
UBE4B-205ENST00000465408 VWDEQ8N2E2 1590 aa12.48□□□□□ -0.41
UBE4B-205ENST00000465408 TRIM52Q96A61 297 aa12.48□□□□□ -0.41
UBE4B-205ENST00000465408 AGLP35573 1532 aa12.47□□□□□ -0.41
UBE4B-205ENST00000465408 NEURL4Q96JN8 1562 aa12.47□□□□□ -0.41
UBE4B-205ENST00000465408 DIP2CQ9Y2E4 1556 aa12.47□□□□□ -0.41
UBE4B-205ENST00000465408 CCNB3Q8WWL7 1395 aa12.46□□□□□ -0.41
UBE4B-205ENST00000465408 RNF17Q9BXT8 1623 aaKnown RBP12.46□□□□□ -0.41
UBE4B-205ENST00000465408 LRRC7Q96NW7 1537 aa12.46□□□□□ -0.42
UBE4B-205ENST00000465408 CNTLNQ9NXG0 1405 aa12.45□□□□□ -0.42
UBE4B-205ENST00000465408 REREQ9P2R6 1566 aa12.45□□□□□ -0.42
UBE4B-205ENST00000465408 SETBP1Q9Y6X0 1596 aa12.44□□□□□ -0.42
UBE4B-205ENST00000465408 ZMYM3Q14202 1370 aa12.42□□□□□ -0.42
UBE4B-205ENST00000465408 MROH2AA6NES4 1674 aa12.42□□□□□ -0.42
UBE4B-205ENST00000465408 ABCA6Q8N139 1617 aa12.41□□□□□ -0.42
UBE4B-205ENST00000465408 POLR1AO95602 1720 aaPredicted RBP12.41□□□□□ -0.42
UBE4B-205ENST00000465408 ITGAEP38570 1179 aa12.41□□□□□ -0.42
UBE4B-205ENST00000465408 RAPGEF6Q8TEU7 1601 aa12.4□□□□□ -0.42
UBE4B-205ENST00000465408 LRRIQ1Q96JM4 1722 aa12.4□□□□□ -0.42
UBE4B-205ENST00000465408 MTUS2Q5JR59 1369 aa12.4□□□□□ -0.42
UBE4B-205ENST00000465408 KDM5CP41229 1560 aa12.39□□□□□ -0.43
UBE4B-205ENST00000465408 STRCP1A6NGW2 1772 aa12.39□□□□□ -0.43
UBE4B-205ENST00000465408 NUP153P49790 1475 aaKnown RBP12.39□□□□□ -0.43
UBE4B-205ENST00000465408 FAM50AQ14320 339 aaKnown RBP12.38□□□□□ -0.43
UBE4B-205ENST00000465408 AFAP1Q8N556 730 aa12.38□□□□□ -0.43
UBE4B-205ENST00000465408 RBM33Q96EV2 1170 aaKnown RBP12.38□□□□□ -0.43
UBE4B-205ENST00000465408 ZNF518AQ6AHZ1 1483 aa12.38□□□□□ -0.43
UBE4B-205ENST00000465408 DNMT1P26358 1616 aaKnown RBP12.37□□□□□ -0.43
UBE4B-205ENST00000465408 PLCH2O75038 1416 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms