RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 ARHGEF40Q8TER5 1519 aa30.47■■■□□ 2.47
SF3A1-205ENST00000463818 ADAMTSL3P82987 1691 aa30.46■■■□□ 2.47
SF3A1-205ENST00000463818 PTPRMP28827 1452 aa30.46■■■□□ 2.47
SF3A1-205ENST00000463818 AFAP1Q8N556 730 aa30.44■■■□□ 2.46
SF3A1-205ENST00000463818 HECW2Q9P2P5 1572 aa30.44■■■□□ 2.46
SF3A1-205ENST00000463818 ZFYVE16Q7Z3T8 1539 aa30.43■■■□□ 2.46
SF3A1-205ENST00000463818 FYCO1Q9BQS8 1478 aa30.43■■■□□ 2.46
SF3A1-205ENST00000463818 ARHGAP5Q13017 1502 aa30.42■■■□□ 2.46
SF3A1-205ENST00000463818 MYO5CQ9NQX4 1742 aa30.42■■■□□ 2.46
SF3A1-205ENST00000463818 BCORL1Q5H9F3 1711 aa30.41■■■□□ 2.46
SF3A1-205ENST00000463818 MLECQ14165 292 aa30.39■■■□□ 2.46
SF3A1-205ENST00000463818 MYT1LQ9UL68 1186 aa30.36■■■□□ 2.45
SF3A1-205ENST00000463818 ATP10AO60312 1499 aa30.35■■■□□ 2.45
SF3A1-205ENST00000463818 MADDQ8WXG6 1647 aa30.33■■■□□ 2.45
SF3A1-205ENST00000463818 ZNF518AQ6AHZ1 1483 aa30.33■■■□□ 2.45
SF3A1-205ENST00000463818 PLPPR3Q6T4P5 718 aa30.3■■■□□ 2.44
SF3A1-205ENST00000463818 ZNF777Q9ULD5 760 aaPredicted RBP30.29■■■□□ 2.44
SF3A1-205ENST00000463818 C9orf84Q5VXU9 1444 aa30.28■■■□□ 2.44
SF3A1-205ENST00000463818 CDC42BPBQ9Y5S2 1711 aa30.27■■■□□ 2.44
SF3A1-205ENST00000463818 TRAPPC8Q9Y2L5 1435 aa30.26■■■□□ 2.43
SF3A1-205ENST00000463818 SIGLEC1Q9BZZ2 1709 aa30.25■■■□□ 2.43
SF3A1-205ENST00000463818 ARHGEF12Q9NZN5 1544 aa30.25■■■□□ 2.43
SF3A1-205ENST00000463818 CEP162Q5TB80 1403 aa30.24■■■□□ 2.43
SF3A1-205ENST00000463818 LOC105371045A0A1W2PR82 267 aa30.23■■■□□ 2.43
SF3A1-205ENST00000463818 KDM5CP41229 1560 aa30.23■■■□□ 2.43
SF3A1-205ENST00000463818 PREX2Q70Z35 1606 aa30.22■■■□□ 2.43
SF3A1-205ENST00000463818 MTUS2Q5JR59 1369 aa30.22■■■□□ 2.43
SF3A1-205ENST00000463818 GPATCH8Q9UKJ3 1502 aaKnown RBP30.22■■■□□ 2.43
SF3A1-205ENST00000463818 RIMS1Q86UR5 1692 aaKnown RBP30.2■■■□□ 2.43
SF3A1-205ENST00000463818 CFDP1Q9UEE9 299 aaPredicted RBP30.2■■■□□ 2.43
SF3A1-205ENST00000463818 MLH3Q9UHC1 1453 aa30.19■■■□□ 2.42
SF3A1-205ENST00000463818 HNRNPMP52272 730 aaKnown RBP eCLIP30.18■■■□□ 2.42
SF3A1-205ENST00000463818 ABCC1P33527 1531 aa30.17■■■□□ 2.42
SF3A1-205ENST00000463818 CCNB3Q8WWL7 1395 aa30.17■■■□□ 2.42
SF3A1-205ENST00000463818 CDC42BPAQ5VT25 1732 aa30.14■■■□□ 2.42
SF3A1-205ENST00000463818 ILDR1Q86SU0 546 aaPredicted RBP30.13■■■□□ 2.41
SF3A1-205ENST00000463818 CEBPAP49715 358 aaPredicted RBP30.11■■■□□ 2.41
SF3A1-205ENST00000463818 LMTK3Q96Q04 1460 aa30.11■■■□□ 2.41
SF3A1-205ENST00000463818 DIP2CQ9Y2E4 1556 aa30.11■■■□□ 2.41
SF3A1-205ENST00000463818 SPAG9O60271 1321 aaKnown RBP30.09■■■□□ 2.41
SF3A1-205ENST00000463818 HSPA2P54652 639 aa30.09■■■□□ 2.41
SF3A1-205ENST00000463818 ITSN2Q9NZM3 1697 aa30.07■■■□□ 2.41
SF3A1-205ENST00000463818 SAMD9LQ8IVG5 1584 aa30.07■■■□□ 2.4
SF3A1-205ENST00000463818 KIAA1107Q9UPP5 1409 aa30.06■■■□□ 2.4
SF3A1-205ENST00000463818 ZNF644Q9H582 1327 aaPredicted RBP30.04■■■□□ 2.4
SF3A1-205ENST00000463818 ABCA6Q8N139 1617 aa30.04■■■□□ 2.4
SF3A1-205ENST00000463818 REREQ9P2R6 1566 aa30.03■■■□□ 2.4
SF3A1-205ENST00000463818 FER1L4A9Z1Z3 1794 aa30.03■■■□□ 2.4
SF3A1-205ENST00000463818 SYCP2Q9BX26 1530 aa30.03■■■□□ 2.4
SF3A1-205ENST00000463818 PLEKHH2Q8IVE3 1493 aa30.03■■■□□ 2.4
SF3A1-205ENST00000463818 ESF1Q9H501 851 aaKnown RBP30.02■■■□□ 2.4
SF3A1-205ENST00000463818 AGLP35573 1532 aa30■■■□□ 2.39
SF3A1-205ENST00000463818 KIDINS220Q9ULH0 1771 aa30■■■□□ 2.39
SF3A1-205ENST00000463818 EHBP1L1Q8N3D4 1523 aa29.99■■■□□ 2.39
SF3A1-205ENST00000463818 TIAM1Q13009 1591 aa29.93■■■□□ 2.38
SF3A1-205ENST00000463818 VPS8Q8N3P4 1428 aa29.92■■■□□ 2.38
SF3A1-205ENST00000463818 NCOA2Q15596 1464 aa29.88■■■□□ 2.37
SF3A1-205ENST00000463818 MBD5Q9P267 1494 aa29.88■■■□□ 2.37
SF3A1-205ENST00000463818 ATP7AQ04656 1500 aa29.88■■■□□ 2.37
SF3A1-205ENST00000463818 A2MP01023 1474 aa29.85■■■□□ 2.37
SF3A1-205ENST00000463818 CNTLNQ9NXG0 1405 aa29.84■■■□□ 2.37
SF3A1-205ENST00000463818 GGT6Q6P531 493 aa29.83■■■□□ 2.37
SF3A1-205ENST00000463818 UHRF1BP1Q6BDS2 1440 aa29.82■■■□□ 2.36
SF3A1-205ENST00000463818 KANK4Q5T7N3 995 aaPredicted RBP29.82■■■□□ 2.36
SF3A1-205ENST00000463818 RSPH4AQ5TD94 716 aa29.82■■■□□ 2.36
SF3A1-205ENST00000463818 INO80Q9ULG1 1556 aaPredicted RBP29.8■■■□□ 2.36
SF3A1-205ENST00000463818 LRRC9Q6ZRR7 1453 aa29.8■■■□□ 2.36
SF3A1-205ENST00000463818 RTEL1-TNFRSF6BF6WH68 1400 aa29.79■■■□□ 2.36
SF3A1-205ENST00000463818 ZMYM3Q14202 1370 aa29.79■■■□□ 2.36
SF3A1-205ENST00000463818 SUPT6HQ7KZ85 1726 aaKnown RBP29.79■■■□□ 2.36
SF3A1-205ENST00000463818 SETD1BQ9UPS6 1966 aaKnown RBP29.78■■■□□ 2.36
SF3A1-205ENST00000463818 FBXO41Q8TF61 875 aa29.78■■■□□ 2.36
SF3A1-205ENST00000463818 PREX1Q8TCU6 1659 aa29.76■■■□□ 2.36
SF3A1-205ENST00000463818 PPP6R1Q9UPN7 881 aa29.75■■■□□ 2.35
SF3A1-205ENST00000463818 C3P01024 1663 aa29.75■■■□□ 2.35
SF3A1-205ENST00000463818 DHX29Q7Z478 1369 aaKnown RBP29.75■■■□□ 2.35
SF3A1-205ENST00000463818 CAMSAP2Q08AD1 1489 aa29.74■■■□□ 2.35
SF3A1-205ENST00000463818 PLXNC1O60486 1568 aa29.73■■■□□ 2.35
SF3A1-205ENST00000463818 TSPY4P0CV99 314 aa29.72■■■□□ 2.35
SF3A1-205ENST00000463818 TSPY10P0CW01 314 aa29.72■■■□□ 2.35
SF3A1-205ENST00000463818 DMRT2Q9Y5R5 561 aa29.72■■■□□ 2.35
SF3A1-205ENST00000463818 CCDC141Q6ZP82 1450 aa29.72■■■□□ 2.35
SF3A1-205ENST00000463818 MAP3K1Q13233 1512 aa29.71■■■□□ 2.35
SF3A1-205ENST00000463818 KIF3BO15066 747 aa29.68■■■□□ 2.34
SF3A1-205ENST00000463818 APLP2Q06481 763 aa29.68■■■□□ 2.34
SF3A1-205ENST00000463818 NPATQ14207 1427 aa29.66■■■□□ 2.34
SF3A1-205ENST00000463818 ADGBQ8N7X0 1667 aa29.64■■■□□ 2.34
SF3A1-205ENST00000463818 CERKQ8TCT0 537 aa29.63■■■□□ 2.33
SF3A1-205ENST00000463818 MROH2AA6NES4 1674 aa29.6■■■□□ 2.33
SF3A1-205ENST00000463818 PTPRKQ15262 1439 aa29.59■■■□□ 2.33
SF3A1-205ENST00000463818 MYOM3Q5VTT5 1437 aa29.59■■■□□ 2.33
SF3A1-205ENST00000463818 ARHGEF5Q12774 1597 aa29.59■■■□□ 2.33
SF3A1-205ENST00000463818 CLTCQ00610 1675 aaKnown RBP29.58■■■□□ 2.33
SF3A1-205ENST00000463818 MIA2Q96PC5 1412 aa29.58■■■□□ 2.33
SF3A1-205ENST00000463818 STRCQ7RTU9 1775 aa29.57■■■□□ 2.32
SF3A1-205ENST00000463818 WASHC2CQ9Y4E1 1318 aa29.55■■■□□ 2.32
SF3A1-205ENST00000463818 PTPRTO14522 1441 aa29.54■■■□□ 2.32
SF3A1-205ENST00000463818 FBXO31Q5XUX0 539 aaPredicted RBP29.51■■■□□ 2.31
SF3A1-205ENST00000463818 NCOA1Q15788 1441 aa29.51■■■□□ 2.31
SF3A1-205ENST00000463818 NCKAP5LQ9HCH0 1330 aa29.49■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms