RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 FANCAO15360 1455 aa21.69■■□□□ 1.06
SEMA3D-203ENST00000463315 EFCAB2Q5VUJ9 269 aa21.66■■□□□ 1.06
SEMA3D-203ENST00000463315 MYO5CQ9NQX4 1742 aa21.66■■□□□ 1.06
SEMA3D-203ENST00000463315 TIAM1Q13009 1591 aa21.65■■□□□ 1.06
SEMA3D-203ENST00000463315 EHBP1L1Q8N3D4 1523 aa21.65■■□□□ 1.06
SEMA3D-203ENST00000463315 AKNAQ7Z591 1439 aa21.65■■□□□ 1.06
SEMA3D-203ENST00000463315 PREX2Q70Z35 1606 aa21.58■■□□□ 1.05
SEMA3D-203ENST00000463315 DENND4BO75064 1496 aaPredicted RBP21.58■■□□□ 1.05
SEMA3D-203ENST00000463315 ARHGAP5Q13017 1502 aa21.58■■□□□ 1.04
SEMA3D-203ENST00000463315 LRRC9Q6ZRR7 1453 aa21.58■■□□□ 1.04
SEMA3D-203ENST00000463315 GPATCH8Q9UKJ3 1502 aaKnown RBP21.57■■□□□ 1.04
SEMA3D-203ENST00000463315 APLP2Q06481 763 aa21.57■■□□□ 1.04
SEMA3D-203ENST00000463315 CCNB3Q8WWL7 1395 aa21.56■■□□□ 1.04
SEMA3D-203ENST00000463315 ADGRL1O94910 1474 aa21.56■■□□□ 1.04
SEMA3D-203ENST00000463315 CDC42BPBQ9Y5S2 1711 aa21.55■■□□□ 1.04
SEMA3D-203ENST00000463315 CDC42BPAQ5VT25 1732 aa21.55■■□□□ 1.04
SEMA3D-203ENST00000463315 SCAPERQ9BY12 1400 aa21.54■■□□□ 1.04
SEMA3D-203ENST00000463315 SUPT6HQ7KZ85 1726 aaKnown RBP21.53■■□□□ 1.04
SEMA3D-203ENST00000463315 RAPGEF3O95398 923 aa21.53■■□□□ 1.04
SEMA3D-203ENST00000463315 FRMPD1Q5SYB0 1578 aa21.51■■□□□ 1.03
SEMA3D-203ENST00000463315 NCOA2Q15596 1464 aa21.51■■□□□ 1.03
SEMA3D-203ENST00000463315 RICTORQ6R327 1708 aa21.5■■□□□ 1.03
SEMA3D-203ENST00000463315 POGZQ7Z3K3 1410 aa21.5■■□□□ 1.03
SEMA3D-203ENST00000463315 CFDP1Q9UEE9 299 aaPredicted RBP21.5■■□□□ 1.03
SEMA3D-203ENST00000463315 MAGI2Q86UL8 1455 aa21.5■■□□□ 1.03
SEMA3D-203ENST00000463315 ZMYM4Q5VZL5 1548 aa21.49■■□□□ 1.03
SEMA3D-203ENST00000463315 ITSN2Q9NZM3 1697 aa21.48■■□□□ 1.03
SEMA3D-203ENST00000463315 ZNF518AQ6AHZ1 1483 aa21.48■■□□□ 1.03
SEMA3D-203ENST00000463315 PLEKHH2Q8IVE3 1493 aa21.48■■□□□ 1.03
SEMA3D-203ENST00000463315 KANK4Q5T7N3 995 aaPredicted RBP21.48■■□□□ 1.03
SEMA3D-203ENST00000463315 KIAA1107Q9UPP5 1409 aa21.47■■□□□ 1.03
SEMA3D-203ENST00000463315 MAPK8IP2Q13387 824 aaPredicted RBP21.47■■□□□ 1.03
SEMA3D-203ENST00000463315 ABCC1P33527 1531 aa21.46■■□□□ 1.03
SEMA3D-203ENST00000463315 KDM5CP41229 1560 aa21.43■■□□□ 1.02
SEMA3D-203ENST00000463315 SAMD9LQ8IVG5 1584 aa21.42■■□□□ 1.02
SEMA3D-203ENST00000463315 ARHGEF12Q9NZN5 1544 aa21.4■■□□□ 1.02
SEMA3D-203ENST00000463315 ZNF777Q9ULD5 760 aaPredicted RBP21.4■■□□□ 1.02
SEMA3D-203ENST00000463315 MIA2Q96PC5 1412 aa21.39■■□□□ 1.02
SEMA3D-203ENST00000463315 AFAP1Q8N556 730 aa21.39■■□□□ 1.01
SEMA3D-203ENST00000463315 ARHGEF40Q8TER5 1519 aa21.39■■□□□ 1.01
SEMA3D-203ENST00000463315 MLH3Q9UHC1 1453 aa21.39■■□□□ 1.01
SEMA3D-203ENST00000463315 RSPH4AQ5TD94 716 aa21.38■■□□□ 1.01
SEMA3D-203ENST00000463315 ZFYVE16Q7Z3T8 1539 aa21.37■■□□□ 1.01
SEMA3D-203ENST00000463315 MYOM3Q5VTT5 1437 aa21.37■■□□□ 1.01
SEMA3D-203ENST00000463315 TRAPPC8Q9Y2L5 1435 aa21.37■■□□□ 1.01
SEMA3D-203ENST00000463315 SCAF1Q9H7N4 1312 aaKnown RBP21.36■■□□□ 1.01
SEMA3D-203ENST00000463315 SYCP2Q9BX26 1530 aa21.35■■□□□ 1.01
SEMA3D-203ENST00000463315 HECW2Q9P2P5 1572 aa21.34■■□□□ 1.01
SEMA3D-203ENST00000463315 MBD5Q9P267 1494 aa21.33■■□□□ 1.01
SEMA3D-203ENST00000463315 HNRNPMP52272 730 aaKnown RBP eCLIP21.33■■□□□ 1.01
SEMA3D-203ENST00000463315 ZNF644Q9H582 1327 aaPredicted RBP21.32■■□□□ 1
SEMA3D-203ENST00000463315 YEATS2Q9ULM3 1422 aa21.32■■□□□ 1
SEMA3D-203ENST00000463315 ATP10AO60312 1499 aa21.32■■□□□ 1
SEMA3D-203ENST00000463315 CAMSAP2Q08AD1 1489 aa21.31■■□□□ 1
SEMA3D-203ENST00000463315 PPP4R3CPQ6ZMV5 832 aa21.29■■□□□ 1
SEMA3D-203ENST00000463315 SPAG9O60271 1321 aaKnown RBP21.29■■□□□ 1
SEMA3D-203ENST00000463315 C9orf84Q5VXU9 1444 aa21.28■■□□□ 1
SEMA3D-203ENST00000463315 ARHGEF5Q12774 1597 aa21.27■■□□□ 1
SEMA3D-203ENST00000463315 REREQ9P2R6 1566 aa21.27■■□□□ 1
SEMA3D-203ENST00000463315 KDM4FA0A1W2PPD8 638 aa21.27■■□□□ 1
SEMA3D-203ENST00000463315 RTEL1-TNFRSF6BF6WH68 1400 aa21.27■■□□□ 1
SEMA3D-203ENST00000463315 CCDC141Q6ZP82 1450 aa21.26■□□□□ 0.99
SEMA3D-203ENST00000463315 MYT1LQ9UL68 1186 aa21.25■□□□□ 0.99
SEMA3D-203ENST00000463315 KIDINS220Q9ULH0 1771 aa21.25■□□□□ 0.99
SEMA3D-203ENST00000463315 DIP2CQ9Y2E4 1556 aa21.24■□□□□ 0.99
SEMA3D-203ENST00000463315 FGD6Q6ZV73 1430 aa21.24■□□□□ 0.99
SEMA3D-203ENST00000463315 INO80Q9ULG1 1556 aaPredicted RBP21.23■□□□□ 0.99
SEMA3D-203ENST00000463315 ATP7AQ04656 1500 aa21.23■□□□□ 0.99
SEMA3D-203ENST00000463315 TCOF1Q13428 1488 aaKnown RBP21.21■□□□□ 0.99
SEMA3D-203ENST00000463315 TSPY4P0CV99 314 aa21.21■□□□□ 0.99
SEMA3D-203ENST00000463315 TSPY10P0CW01 314 aa21.21■□□□□ 0.99
SEMA3D-203ENST00000463315 ARID4BQ4LE39 1312 aaPredicted RBP21.21■□□□□ 0.99
SEMA3D-203ENST00000463315 ABCA6Q8N139 1617 aa21.21■□□□□ 0.99
SEMA3D-203ENST00000463315 AGLP35573 1532 aa21.2■□□□□ 0.98
SEMA3D-203ENST00000463315 PTPN23Q9H3S7 1636 aa21.19■□□□□ 0.98
SEMA3D-203ENST00000463315 BCORL1Q5H9F3 1711 aa21.18■□□□□ 0.98
SEMA3D-203ENST00000463315 DMRT2Q9Y5R5 561 aa21.18■□□□□ 0.98
SEMA3D-203ENST00000463315 ADAMTSL3P82987 1691 aa21.17■□□□□ 0.98
SEMA3D-203ENST00000463315 MAST1Q9Y2H9 1570 aa21.15■□□□□ 0.98
SEMA3D-203ENST00000463315 SIGLEC1Q9BZZ2 1709 aa21.14■□□□□ 0.97
SEMA3D-203ENST00000463315 A2MP01023 1474 aa21.13■□□□□ 0.97
SEMA3D-203ENST00000463315 ADGBQ8N7X0 1667 aa21.13■□□□□ 0.97
SEMA3D-203ENST00000463315 SHANK2Q9UPX8 1470 aa21.13■□□□□ 0.97
SEMA3D-203ENST00000463315 PLXNC1O60486 1568 aa21.12■□□□□ 0.97
SEMA3D-203ENST00000463315 DHX29Q7Z478 1369 aaKnown RBP21.1■□□□□ 0.97
SEMA3D-203ENST00000463315 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.1■□□□□ 0.97
SEMA3D-203ENST00000463315 DNMT1P26358 1616 aaKnown RBP21.1■□□□□ 0.97
SEMA3D-203ENST00000463315 ABCC5O15440 1437 aa21.1■□□□□ 0.97
SEMA3D-203ENST00000463315 DAPK1P53355 1430 aa21.08■□□□□ 0.97
SEMA3D-203ENST00000463315 CROCC2H7BZ55 1655 aa21.05■□□□□ 0.96
SEMA3D-203ENST00000463315 MADDQ8WXG6 1647 aa21.05■□□□□ 0.96
SEMA3D-203ENST00000463315 PTPRMP28827 1452 aa21.05■□□□□ 0.96
SEMA3D-203ENST00000463315 MLECQ14165 292 aa21.04■□□□□ 0.96
SEMA3D-203ENST00000463315 FAM50AQ14320 339 aaKnown RBP21.03■□□□□ 0.96
SEMA3D-203ENST00000463315 CNTLNQ9NXG0 1405 aa21.02■□□□□ 0.96
SEMA3D-203ENST00000463315 PPARGC1BQ86YN6 1023 aaKnown RBP21.01■□□□□ 0.95
SEMA3D-203ENST00000463315 ANKRD30AQ9BXX3 1397 aa21■□□□□ 0.95
SEMA3D-203ENST00000463315 DUOX2Q9NRD8 1548 aa21■□□□□ 0.95
SEMA3D-203ENST00000463315 RRBP1Q9P2E9 1410 aaKnown RBP21■□□□□ 0.95
SEMA3D-203ENST00000463315 ADGRL2O95490 1459 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms