RNA–Protein interactions for RNA: ENST00000462899.1

SMC3-202, Transcript of structural maintenance of chromosomes 3, humanhuman

TSL 5

Gene SMC3, Length 777 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-202ENST00000462899 DENND4BO75064 1496 aaPredicted RBP13.4□□□□□ -0.26
SMC3-202ENST00000462899 EFCAB5A4FU69 1503 aa13.39□□□□□ -0.27
SMC3-202ENST00000462899 ARID3CA6NKF2 412 aa13.39□□□□□ -0.27
SMC3-202ENST00000462899 PREX1Q8TCU6 1659 aa13.39□□□□□ -0.27
SMC3-202ENST00000462899 ZFYVE16Q7Z3T8 1539 aa13.39□□□□□ -0.27
SMC3-202ENST00000462899 STRCQ7RTU9 1775 aa13.38□□□□□ -0.27
SMC3-202ENST00000462899 AKNAQ7Z591 1439 aa13.38□□□□□ -0.27
SMC3-202ENST00000462899 HECW1Q76N89 1606 aa13.37□□□□□ -0.27
SMC3-202ENST00000462899 YEATS2Q9ULM3 1422 aa13.37□□□□□ -0.27
SMC3-202ENST00000462899 MAGI2Q86UL8 1455 aa13.36□□□□□ -0.27
SMC3-202ENST00000462899 ARHGEF12Q9NZN5 1544 aa13.36□□□□□ -0.27
SMC3-202ENST00000462899 HSPA2P54652 639 aa13.36□□□□□ -0.27
SMC3-202ENST00000462899 ARID4BQ4LE39 1312 aaPredicted RBP13.35□□□□□ -0.27
SMC3-202ENST00000462899 POGZQ7Z3K3 1410 aa13.34□□□□□ -0.27
SMC3-202ENST00000462899 P3H3Q8IVL6 736 aa13.34□□□□□ -0.27
SMC3-202ENST00000462899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.34□□□□□ -0.27
SMC3-202ENST00000462899 CERKQ8TCT0 537 aa13.33□□□□□ -0.28
SMC3-202ENST00000462899 SLC4A2P04920 1241 aa13.32□□□□□ -0.28
SMC3-202ENST00000462899 SETD1BQ9UPS6 1966 aaKnown RBP13.29□□□□□ -0.28
SMC3-202ENST00000462899 MYO5CQ9NQX4 1742 aa13.28□□□□□ -0.28
SMC3-202ENST00000462899 ILDR2Q71H61 639 aa13.28□□□□□ -0.28
SMC3-202ENST00000462899 FAM9AQ8IZU1 332 aaPredicted RBP13.27□□□□□ -0.29
SMC3-202ENST00000462899 KDM5CP41229 1560 aa13.27□□□□□ -0.29
SMC3-202ENST00000462899 ATP10AO60312 1499 aa13.26□□□□□ -0.29
SMC3-202ENST00000462899 PLCH2O75038 1416 aa13.26□□□□□ -0.29
SMC3-202ENST00000462899 CDK13Q14004 1512 aaKnown RBP13.26□□□□□ -0.29
SMC3-202ENST00000462899 C9orf84Q5VXU9 1444 aa13.26□□□□□ -0.29
SMC3-202ENST00000462899 SPATA31D1Q6ZQQ2 1576 aa13.26□□□□□ -0.29
SMC3-202ENST00000462899 REREQ9P2R6 1566 aa13.25□□□□□ -0.29
SMC3-202ENST00000462899 C3P01024 1663 aa13.24□□□□□ -0.29
SMC3-202ENST00000462899 SCAPERQ9BY12 1400 aa13.23□□□□□ -0.29
SMC3-202ENST00000462899 PLEKHD1A6NEE1 506 aa13.23□□□□□ -0.29
SMC3-202ENST00000462899 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.23□□□□□ -0.29
SMC3-202ENST00000462899 SOCS7O14512 581 aa13.23□□□□□ -0.29
SMC3-202ENST00000462899 HNRNPUL2Q1KMD3 747 aaKnown RBP13.23□□□□□ -0.29
SMC3-202ENST00000462899 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
SMC3-202ENST00000462899 LTBP4Q8N2S1 1624 aa13.23□□□□□ -0.29
SMC3-202ENST00000462899 DIP2CQ9Y2E4 1556 aa13.23□□□□□ -0.29
SMC3-202ENST00000462899 KIF14Q15058 1648 aa13.22□□□□□ -0.29
SMC3-202ENST00000462899 DISP3Q9P2K9 1392 aa13.21□□□□□ -0.29
SMC3-202ENST00000462899 CSRNP3Q8WYN3 585 aa13.21□□□□□ -0.29
SMC3-202ENST00000462899 LRRIQ1Q96JM4 1722 aa13.21□□□□□ -0.3
SMC3-202ENST00000462899 ABCA6Q8N139 1617 aa13.21□□□□□ -0.3
SMC3-202ENST00000462899 ZBTB22O15209 634 aa13.2□□□□□ -0.3
SMC3-202ENST00000462899 PTPRTO14522 1441 aa13.2□□□□□ -0.3
SMC3-202ENST00000462899 IQSEC2Q5JU85 1478 aa13.19□□□□□ -0.3
SMC3-202ENST00000462899 ZNF518AQ6AHZ1 1483 aa13.19□□□□□ -0.3
SMC3-202ENST00000462899 UHRF1BP1Q6BDS2 1440 aa13.19□□□□□ -0.3
SMC3-202ENST00000462899 CDC42BPBQ9Y5S2 1711 aa13.19□□□□□ -0.3
SMC3-202ENST00000462899 MLECQ14165 292 aa13.18□□□□□ -0.3
SMC3-202ENST00000462899 EEA1Q15075 1411 aa13.18□□□□□ -0.3
SMC3-202ENST00000462899 AGLP35573 1532 aa13.17□□□□□ -0.3
SMC3-202ENST00000462899 CEBPAP49715 358 aaPredicted RBP13.16□□□□□ -0.3
SMC3-202ENST00000462899 RNF39Q9H2S5 420 aa13.16□□□□□ -0.3
SMC3-202ENST00000462899 ITSN2Q9NZM3 1697 aa13.15□□□□□ -0.31
SMC3-202ENST00000462899 FOXD4L1Q9NU39 408 aa13.14□□□□□ -0.31
SMC3-202ENST00000462899 MLH3Q9UHC1 1453 aa13.14□□□□□ -0.31
SMC3-202ENST00000462899 MROH2AA6NES4 1674 aa13.14□□□□□ -0.31
SMC3-202ENST00000462899 KIDINS220Q9ULH0 1771 aa13.14□□□□□ -0.31
SMC3-202ENST00000462899 NCOA1Q15788 1441 aa13.13□□□□□ -0.31
SMC3-202ENST00000462899 PREX2Q70Z35 1606 aa13.13□□□□□ -0.31
SMC3-202ENST00000462899 U3KPZ7 1027 aaPredicted RBP13.13□□□□□ -0.31
SMC3-202ENST00000462899 ABCC1P33527 1531 aa13.13□□□□□ -0.31
SMC3-202ENST00000462899 ARHGAP5Q13017 1502 aa13.11□□□□□ -0.31
SMC3-202ENST00000462899 ZNF142P52746 1687 aaPredicted RBP13.11□□□□□ -0.31
SMC3-202ENST00000462899 EFCAB2Q5VUJ9 269 aa13.1□□□□□ -0.31
SMC3-202ENST00000462899 TROQ12816 1431 aaPredicted RBP13.1□□□□□ -0.31
SMC3-202ENST00000462899 CDC42BPAQ5VT25 1732 aa13.09□□□□□ -0.31
SMC3-202ENST00000462899 FMN1Q68DA7 1419 aa13.09□□□□□ -0.31
SMC3-202ENST00000462899 TRAPPC8Q9Y2L5 1435 aa13.09□□□□□ -0.31
SMC3-202ENST00000462899 ARHGAP35Q9NRY4 1499 aa13.09□□□□□ -0.31
SMC3-202ENST00000462899 RANGAP1P46060 587 aaPredicted RBP13.08□□□□□ -0.32
SMC3-202ENST00000462899 CAMSAP1Q5T5Y3 1602 aa13.08□□□□□ -0.32
SMC3-202ENST00000462899 AFAP1Q8N556 730 aa13.07□□□□□ -0.32
SMC3-202ENST00000462899 MYO3AQ8NEV4 1616 aa13.06□□□□□ -0.32
SMC3-202ENST00000462899 NPATQ14207 1427 aa13.05□□□□□ -0.32
SMC3-202ENST00000462899 CNTLNQ9NXG0 1405 aa13.05□□□□□ -0.32
SMC3-202ENST00000462899 SUPT6HQ7KZ85 1726 aaKnown RBP13.05□□□□□ -0.32
SMC3-202ENST00000462899 PLXNC1O60486 1568 aa13.04□□□□□ -0.32
SMC3-202ENST00000462899 SAMD9LQ8IVG5 1584 aa13.03□□□□□ -0.32
SMC3-202ENST00000462899 PLA2R1Q13018 1463 aa13.03□□□□□ -0.32
SMC3-202ENST00000462899 CLIP1P30622 1438 aa13.02□□□□□ -0.33
SMC3-202ENST00000462899 TCOF1Q13428 1488 aaKnown RBP13.02□□□□□ -0.33
SMC3-202ENST00000462899 CLTCQ00610 1675 aaKnown RBP13.02□□□□□ -0.33
SMC3-202ENST00000462899 INO80Q9ULG1 1556 aaPredicted RBP13□□□□□ -0.33
SMC3-202ENST00000462899 CEP170BQ9Y4F5 1589 aaPredicted RBP13□□□□□ -0.33
SMC3-202ENST00000462899 CDK11AQ9UQ88 783 aaPredicted RBP12.99□□□□□ -0.33
SMC3-202ENST00000462899 MYCNP04198 464 aaPredicted RBP12.98□□□□□ -0.33
SMC3-202ENST00000462899 POLR1AO95602 1720 aaPredicted RBP12.97□□□□□ -0.33
SMC3-202ENST00000462899 MED1Q15648 1581 aaPredicted RBP12.97□□□□□ -0.33
SMC3-202ENST00000462899 SYCP2Q9BX26 1530 aa12.97□□□□□ -0.33
SMC3-202ENST00000462899 CCDC18Q5T9S5 1454 aa12.97□□□□□ -0.33
SMC3-202ENST00000462899 ZNF335Q9H4Z2 1342 aaPredicted RBP12.96□□□□□ -0.33
SMC3-202ENST00000462899 ATP7AQ04656 1500 aa12.96□□□□□ -0.33
SMC3-202ENST00000462899 PTPRKQ15262 1439 aa12.96□□□□□ -0.34
SMC3-202ENST00000462899 ZMYM3Q14202 1370 aa12.95□□□□□ -0.34
SMC3-202ENST00000462899 C1QBPQ07021 282 aaKnown RBP12.95□□□□□ -0.34
SMC3-202ENST00000462899 NEURL4Q96JN8 1562 aa12.94□□□□□ -0.34
SMC3-202ENST00000462899 DNMT1P26358 1616 aaKnown RBP12.94□□□□□ -0.34
SMC3-202ENST00000462899 CASKIN1Q8WXD9 1431 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms