RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 LRRIQ1Q96JM4 1722 aa11.9□□□□□ -0.5
USP4-207ENST00000462673 CFAP74Q9C0B2 1584 aa11.9□□□□□ -0.5
USP4-207ENST00000462673 ARHGAP5Q13017 1502 aa11.88□□□□□ -0.51
USP4-207ENST00000462673 MYT1LQ9UL68 1186 aa11.88□□□□□ -0.51
USP4-207ENST00000462673 SUPT6HQ7KZ85 1726 aaKnown RBP11.88□□□□□ -0.51
USP4-207ENST00000462673 MYO5CQ9NQX4 1742 aa11.87□□□□□ -0.51
USP4-207ENST00000462673 PLEKHH2Q8IVE3 1493 aa11.87□□□□□ -0.51
USP4-207ENST00000462673 GPATCH8Q9UKJ3 1502 aaKnown RBP11.86□□□□□ -0.51
USP4-207ENST00000462673 KDM6BO15054 1643 aa11.86□□□□□ -0.51
USP4-207ENST00000462673 NCOA2Q15596 1464 aa11.86□□□□□ -0.51
USP4-207ENST00000462673 SCAPERQ9BY12 1400 aa11.86□□□□□ -0.51
USP4-207ENST00000462673 TTC37Q6PGP7 1564 aa11.85□□□□□ -0.51
USP4-207ENST00000462673 DENND4BO75064 1496 aaPredicted RBP11.85□□□□□ -0.51
USP4-207ENST00000462673 TSPY4P0CV99 314 aa11.85□□□□□ -0.51
USP4-207ENST00000462673 TSPY10P0CW01 314 aa11.85□□□□□ -0.51
USP4-207ENST00000462673 PCGF6Q9BYE7 350 aa11.85□□□□□ -0.51
USP4-207ENST00000462673 ADGRL1O94910 1474 aa11.84□□□□□ -0.51
USP4-207ENST00000462673 RAPGEF3O95398 923 aa11.84□□□□□ -0.51
USP4-207ENST00000462673 MIA2Q96PC5 1412 aa11.84□□□□□ -0.51
USP4-207ENST00000462673 PPRC1Q5VV67 1664 aaKnown RBP11.83□□□□□ -0.52
USP4-207ENST00000462673 KIAA1107Q9UPP5 1409 aa11.83□□□□□ -0.52
USP4-207ENST00000462673 ITSN2Q9NZM3 1697 aa11.82□□□□□ -0.52
USP4-207ENST00000462673 HNRNPMP52272 730 aaKnown RBP eCLIP11.82□□□□□ -0.52
USP4-207ENST00000462673 MYOM3Q5VTT5 1437 aa11.81□□□□□ -0.52
USP4-207ENST00000462673 MAGI2Q86UL8 1455 aa11.81□□□□□ -0.52
USP4-207ENST00000462673 PREX2Q70Z35 1606 aa11.8□□□□□ -0.52
USP4-207ENST00000462673 AFAP1Q8N556 730 aa11.8□□□□□ -0.52
USP4-207ENST00000462673 ZNF518AQ6AHZ1 1483 aa11.8□□□□□ -0.52
USP4-207ENST00000462673 PELP1Q8IZL8 1130 aaKnown RBP11.79□□□□□ -0.52
USP4-207ENST00000462673 CDC42BPBQ9Y5S2 1711 aa11.79□□□□□ -0.52
USP4-207ENST00000462673 SPAG9O60271 1321 aaKnown RBP11.79□□□□□ -0.52
USP4-207ENST00000462673 CDC42BPAQ5VT25 1732 aa11.78□□□□□ -0.52
USP4-207ENST00000462673 COL17A1Q9UMD9 1497 aaPredicted RBP11.77□□□□□ -0.52
USP4-207ENST00000462673 POGZQ7Z3K3 1410 aa11.77□□□□□ -0.53
USP4-207ENST00000462673 FAM50AQ14320 339 aaKnown RBP11.76□□□□□ -0.53
USP4-207ENST00000462673 PPARGC1BQ86YN6 1023 aaKnown RBP11.76□□□□□ -0.53
USP4-207ENST00000462673 ZNF644Q9H582 1327 aaPredicted RBP11.76□□□□□ -0.53
USP4-207ENST00000462673 ARID4BQ4LE39 1312 aaPredicted RBP11.75□□□□□ -0.53
USP4-207ENST00000462673 RTEL1-TNFRSF6BF6WH68 1400 aa11.73□□□□□ -0.53
USP4-207ENST00000462673 ABCC1P33527 1531 aa11.73□□□□□ -0.53
USP4-207ENST00000462673 FGD6Q6ZV73 1430 aa11.73□□□□□ -0.53
USP4-207ENST00000462673 MLH3Q9UHC1 1453 aa11.73□□□□□ -0.53
USP4-207ENST00000462673 CAMSAP2Q08AD1 1489 aa11.72□□□□□ -0.53
USP4-207ENST00000462673 SAMD9LQ8IVG5 1584 aa11.71□□□□□ -0.53
USP4-207ENST00000462673 ATP10AO60312 1499 aa11.71□□□□□ -0.53
USP4-207ENST00000462673 TRAPPC8Q9Y2L5 1435 aa11.71□□□□□ -0.53
USP4-207ENST00000462673 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP4-207ENST00000462673 ESF1Q9H501 851 aaKnown RBP11.71□□□□□ -0.53
USP4-207ENST00000462673 CCDC141Q6ZP82 1450 aa11.7□□□□□ -0.54
USP4-207ENST00000462673 RICTORQ6R327 1708 aa11.7□□□□□ -0.54
USP4-207ENST00000462673 ZMYM4Q5VZL5 1548 aa11.7□□□□□ -0.54
USP4-207ENST00000462673 SYCP2Q9BX26 1530 aa11.7□□□□□ -0.54
USP4-207ENST00000462673 MBD5Q9P267 1494 aa11.7□□□□□ -0.54
USP4-207ENST00000462673 ZEB1P37275 1124 aaPredicted RBP11.69□□□□□ -0.54
USP4-207ENST00000462673 TRIM26Q12899 539 aaPredicted RBP11.69□□□□□ -0.54
USP4-207ENST00000462673 PPP6R1Q9UPN7 881 aa11.69□□□□□ -0.54
USP4-207ENST00000462673 ZFYVE16Q7Z3T8 1539 aa11.69□□□□□ -0.54
USP4-207ENST00000462673 ARHGEF12Q9NZN5 1544 aa11.69□□□□□ -0.54
USP4-207ENST00000462673 PTPN23Q9H3S7 1636 aa11.68□□□□□ -0.54
USP4-207ENST00000462673 KDM5CP41229 1560 aa11.68□□□□□ -0.54
USP4-207ENST00000462673 ARHGEF5Q12774 1597 aa11.68□□□□□ -0.54
USP4-207ENST00000462673 TCOF1Q13428 1488 aaKnown RBP11.68□□□□□ -0.54
USP4-207ENST00000462673 C9orf84Q5VXU9 1444 aa11.67□□□□□ -0.54
USP4-207ENST00000462673 HECW2Q9P2P5 1572 aa11.67□□□□□ -0.54
USP4-207ENST00000462673 ANKRD30AQ9BXX3 1397 aa11.67□□□□□ -0.54
USP4-207ENST00000462673 ACIN1Q9UKV3 1341 aaKnown RBP11.65□□□□□ -0.54
USP4-207ENST00000462673 FRMPD1Q5SYB0 1578 aa11.65□□□□□ -0.54
USP4-207ENST00000462673 DHX29Q7Z478 1369 aaKnown RBP11.65□□□□□ -0.55
USP4-207ENST00000462673 DAPK1P53355 1430 aa11.64□□□□□ -0.55
USP4-207ENST00000462673 ITGAEP38570 1179 aa11.64□□□□□ -0.55
USP4-207ENST00000462673 RRP7BPQ9NSQ0 103 aa11.64□□□□□ -0.55
USP4-207ENST00000462673 CHIC2Q9UKJ5 165 aa11.64□□□□□ -0.55
USP4-207ENST00000462673 ATP7AQ04656 1500 aa11.64□□□□□ -0.55
USP4-207ENST00000462673 ABCC5O15440 1437 aa11.63□□□□□ -0.55
USP4-207ENST00000462673 RRBP1Q9P2E9 1410 aaKnown RBP11.63□□□□□ -0.55
USP4-207ENST00000462673 YEATS2Q9ULM3 1422 aa11.63□□□□□ -0.55
USP4-207ENST00000462673 ARHGEF40Q8TER5 1519 aa11.62□□□□□ -0.55
USP4-207ENST00000462673 KIF3BO15066 747 aa11.62□□□□□ -0.55
USP4-207ENST00000462673 MLECQ14165 292 aa11.62□□□□□ -0.55
USP4-207ENST00000462673 A2MP01023 1474 aa11.62□□□□□ -0.55
USP4-207ENST00000462673 SHANK2Q9UPX8 1470 aa11.62□□□□□ -0.55
USP4-207ENST00000462673 GGT6Q6P531 493 aa11.61□□□□□ -0.55
USP4-207ENST00000462673 REREQ9P2R6 1566 aa11.6□□□□□ -0.55
USP4-207ENST00000462673 MAST1Q9Y2H9 1570 aa11.6□□□□□ -0.55
USP4-207ENST00000462673 ROCK1Q13464 1354 aa11.6□□□□□ -0.55
USP4-207ENST00000462673 DNMT1P26358 1616 aaKnown RBP11.6□□□□□ -0.55
USP4-207ENST00000462673 KIDINS220Q9ULH0 1771 aa11.59□□□□□ -0.55
USP4-207ENST00000462673 FOXD1Q16676 465 aa11.59□□□□□ -0.55
USP4-207ENST00000462673 AGLP35573 1532 aa11.59□□□□□ -0.55
USP4-207ENST00000462673 NCOA1Q15788 1441 aa11.59□□□□□ -0.55
USP4-207ENST00000462673 ADGBQ8N7X0 1667 aa11.59□□□□□ -0.55
USP4-207ENST00000462673 INO80Q9ULG1 1556 aaPredicted RBP11.58□□□□□ -0.55
USP4-207ENST00000462673 KIF15Q9NS87 1388 aa11.58□□□□□ -0.56
USP4-207ENST00000462673 DUOX2Q9NRD8 1548 aa11.58□□□□□ -0.56
USP4-207ENST00000462673 DIP2CQ9Y2E4 1556 aa11.58□□□□□ -0.56
USP4-207ENST00000462673 WASHC2CQ9Y4E1 1318 aa11.58□□□□□ -0.56
USP4-207ENST00000462673 KANK1Q14678 1352 aa11.57□□□□□ -0.56
USP4-207ENST00000462673 KDM4FA0A1W2PPD8 638 aa11.57□□□□□ -0.56
USP4-207ENST00000462673 CNTLNQ9NXG0 1405 aa11.56□□□□□ -0.56
USP4-207ENST00000462673 ERBINQ96RT1 1412 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms