RNA–Protein interactions for RNA: ENST00000461055.2

NEDD9-206, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-206ENST00000461055 TROQ12816 1431 aaPredicted RBP16.37■□□□□ 0.21
NEDD9-206ENST00000461055 MAGI3Q5TCQ9 1506 aa16.37■□□□□ 0.21
NEDD9-206ENST00000461055 PLEKHD1A6NEE1 506 aa16.35■□□□□ 0.21
NEDD9-206ENST00000461055 ACIN1Q9UKV3 1341 aaKnown RBP16.35■□□□□ 0.21
NEDD9-206ENST00000461055 TCOF1Q13428 1488 aaKnown RBP16.35■□□□□ 0.21
NEDD9-206ENST00000461055 SETD5Q9C0A6 1442 aa16.34■□□□□ 0.21
NEDD9-206ENST00000461055 WDR7Q9Y4E6 1490 aa16.34■□□□□ 0.21
NEDD9-206ENST00000461055 CD109Q6YHK3 1445 aa16.33■□□□□ 0.2
NEDD9-206ENST00000461055 TEX14Q8IWB6 1497 aa16.32■□□□□ 0.2
NEDD9-206ENST00000461055 ATP10BO94823 1461 aa16.31■□□□□ 0.2
NEDD9-206ENST00000461055 PTPN23Q9H3S7 1636 aa16.3■□□□□ 0.2
NEDD9-206ENST00000461055 ITGAEP38570 1179 aa16.3■□□□□ 0.2
NEDD9-206ENST00000461055 HECW2Q9P2P5 1572 aa16.27■□□□□ 0.2
NEDD9-206ENST00000461055 AKNAQ7Z591 1439 aa16.26■□□□□ 0.19
NEDD9-206ENST00000461055 DHX57Q6P158 1386 aaKnown RBP16.26■□□□□ 0.19
NEDD9-206ENST00000461055 RAB3GAP2Q9H2M9 1393 aa16.26■□□□□ 0.19
NEDD9-206ENST00000461055 ITSN2Q9NZM3 1697 aa16.24■□□□□ 0.19
NEDD9-206ENST00000461055 RAPGEF3O95398 923 aa16.24■□□□□ 0.19
NEDD9-206ENST00000461055 HFM1A2PYH4 1435 aa16.24■□□□□ 0.19
NEDD9-206ENST00000461055 KIF14Q15058 1648 aa16.23■□□□□ 0.19
NEDD9-206ENST00000461055 CFDP1Q9UEE9 299 aaPredicted RBP16.21■□□□□ 0.19
NEDD9-206ENST00000461055 GPATCH8Q9UKJ3 1502 aaKnown RBP16.2■□□□□ 0.18
NEDD9-206ENST00000461055 ROCK1Q13464 1354 aa16.2■□□□□ 0.18
NEDD9-206ENST00000461055 SENP3Q9H4L4 574 aaPredicted RBP16.19■□□□□ 0.18
NEDD9-206ENST00000461055 PTPRKQ15262 1439 aa16.16■□□□□ 0.18
NEDD9-206ENST00000461055 NAIPQ13075 1403 aa16.15■□□□□ 0.18
NEDD9-206ENST00000461055 RSPH4AQ5TD94 716 aa16.15■□□□□ 0.18
NEDD9-206ENST00000461055 DAPK1P53355 1430 aa16.14■□□□□ 0.17
NEDD9-206ENST00000461055 TIMELESSQ9UNS1 1208 aa16.14■□□□□ 0.17
NEDD9-206ENST00000461055 DNMT1P26358 1616 aaKnown RBP16.14■□□□□ 0.17
NEDD9-206ENST00000461055 ARAP3Q8WWN8 1544 aa16.14■□□□□ 0.17
NEDD9-206ENST00000461055 ABCC5O15440 1437 aa16.12■□□□□ 0.17
NEDD9-206ENST00000461055 CAMSAP2Q08AD1 1489 aa16.12■□□□□ 0.17
NEDD9-206ENST00000461055 ARID4BQ4LE39 1312 aaPredicted RBP16.1■□□□□ 0.17
NEDD9-206ENST00000461055 GCC2Q8IWJ2 1684 aa16.09■□□□□ 0.17
NEDD9-206ENST00000461055 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
NEDD9-206ENST00000461055 CDC42BPAQ5VT25 1732 aa16.08■□□□□ 0.17
NEDD9-206ENST00000461055 PLEKHH2Q8IVE3 1493 aa16.08■□□□□ 0.16
NEDD9-206ENST00000461055 PTPRMP28827 1452 aa16.07■□□□□ 0.16
NEDD9-206ENST00000461055 SHANK2Q9UPX8 1470 aa16.07■□□□□ 0.16
NEDD9-206ENST00000461055 ABCA9Q8IUA7 1624 aa16.06■□□□□ 0.16
NEDD9-206ENST00000461055 ADGRL2O95490 1459 aa16.06■□□□□ 0.16
NEDD9-206ENST00000461055 ZNF644Q9H582 1327 aaPredicted RBP16.06■□□□□ 0.16
NEDD9-206ENST00000461055 ANKRD30AQ9BXX3 1397 aa16.05■□□□□ 0.16
NEDD9-206ENST00000461055 TSPY4P0CV99 314 aa16.05■□□□□ 0.16
NEDD9-206ENST00000461055 TSPY10P0CW01 314 aa16.05■□□□□ 0.16
NEDD9-206ENST00000461055 PREX2Q70Z35 1606 aa16.05■□□□□ 0.16
NEDD9-206ENST00000461055 ARHGEF5Q12774 1597 aa16.04■□□□□ 0.16
NEDD9-206ENST00000461055 RRP7BPQ9NSQ0 103 aa16.04■□□□□ 0.16
NEDD9-206ENST00000461055 CHIC2Q9UKJ5 165 aa16.04■□□□□ 0.16
NEDD9-206ENST00000461055 ZNF777Q9ULD5 760 aaPredicted RBP16.04■□□□□ 0.16
NEDD9-206ENST00000461055 KIAA1107Q9UPP5 1409 aa16.03■□□□□ 0.16
NEDD9-206ENST00000461055 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.03■□□□□ 0.16
NEDD9-206ENST00000461055 NCOA1Q15788 1441 aa16.02■□□□□ 0.16
NEDD9-206ENST00000461055 ADAMTSL3P82987 1691 aa16.02■□□□□ 0.16
NEDD9-206ENST00000461055 PLCH2O75038 1416 aa16.02■□□□□ 0.15
NEDD9-206ENST00000461055 FRMPD1Q5SYB0 1578 aa16.01■□□□□ 0.15
NEDD9-206ENST00000461055 HSPA2P54652 639 aa16.01■□□□□ 0.15
NEDD9-206ENST00000461055 EFCAB2Q5VUJ9 269 aa16.01■□□□□ 0.15
NEDD9-206ENST00000461055 FBXO41Q8TF61 875 aa16.01■□□□□ 0.15
NEDD9-206ENST00000461055 ADGBQ8N7X0 1667 aa16.01■□□□□ 0.15
NEDD9-206ENST00000461055 CROCC2H7BZ55 1655 aa16■□□□□ 0.15
NEDD9-206ENST00000461055 NEO1Q92859 1461 aa16■□□□□ 0.15
NEDD9-206ENST00000461055 MLECQ14165 292 aa15.99■□□□□ 0.15
NEDD9-206ENST00000461055 MYO5CQ9NQX4 1742 aa15.99■□□□□ 0.15
NEDD9-206ENST00000461055 CCDC141Q6ZP82 1450 aa15.98■□□□□ 0.15
NEDD9-206ENST00000461055 MBD5Q9P267 1494 aa15.98■□□□□ 0.15
NEDD9-206ENST00000461055 CDC42BPBQ9Y5S2 1711 aa15.98■□□□□ 0.15
NEDD9-206ENST00000461055 ARHGAP5Q13017 1502 aa15.98■□□□□ 0.15
NEDD9-206ENST00000461055 C9orf84Q5VXU9 1444 aa15.97■□□□□ 0.15
NEDD9-206ENST00000461055 PHF23Q9BUL5 403 aaPredicted RBP15.97■□□□□ 0.15
NEDD9-206ENST00000461055 MADDQ8WXG6 1647 aa15.97■□□□□ 0.15
NEDD9-206ENST00000461055 TTC37Q6PGP7 1564 aa15.96■□□□□ 0.15
NEDD9-206ENST00000461055 ZNF316A6NFI3 1004 aaPredicted RBP15.96■□□□□ 0.15
NEDD9-206ENST00000461055 BCORL1Q5H9F3 1711 aa15.96■□□□□ 0.15
NEDD9-206ENST00000461055 TRIM52Q96A61 297 aa15.95■□□□□ 0.14
NEDD9-206ENST00000461055 DENND4BO75064 1496 aaPredicted RBP15.95■□□□□ 0.14
NEDD9-206ENST00000461055 SAMD9LQ8IVG5 1584 aa15.95■□□□□ 0.14
NEDD9-206ENST00000461055 YEATS2Q9ULM3 1422 aa15.94■□□□□ 0.14
NEDD9-206ENST00000461055 MAST1Q9Y2H9 1570 aa15.94■□□□□ 0.14
NEDD9-206ENST00000461055 LMTK3Q96Q04 1460 aa15.93■□□□□ 0.14
NEDD9-206ENST00000461055 HNRNPMP52272 730 aaKnown RBP eCLIP15.93■□□□□ 0.14
NEDD9-206ENST00000461055 MPHOSPH9Q99550 1183 aa15.93■□□□□ 0.14
NEDD9-206ENST00000461055 FANCAO15360 1455 aa15.92■□□□□ 0.14
NEDD9-206ENST00000461055 ANKRD50Q9ULJ7 1429 aa15.92■□□□□ 0.14
NEDD9-206ENST00000461055 SIGLEC1Q9BZZ2 1709 aa15.91■□□□□ 0.14
NEDD9-206ENST00000461055 RIMS1Q86UR5 1692 aaKnown RBP15.9■□□□□ 0.14
NEDD9-206ENST00000461055 CEBPAP49715 358 aaPredicted RBP15.9■□□□□ 0.14
NEDD9-206ENST00000461055 RICTORQ6R327 1708 aa15.88■□□□□ 0.13
NEDD9-206ENST00000461055 KIF15Q9NS87 1388 aa15.87■□□□□ 0.13
NEDD9-206ENST00000461055 SCAPERQ9BY12 1400 aa15.87■□□□□ 0.13
NEDD9-206ENST00000461055 SYCP2Q9BX26 1530 aa15.87■□□□□ 0.13
NEDD9-206ENST00000461055 RTEL1-TNFRSF6BF6WH68 1400 aa15.86■□□□□ 0.13
NEDD9-206ENST00000461055 ARHGEF40Q8TER5 1519 aa15.86■□□□□ 0.13
NEDD9-206ENST00000461055 NEUROD1Q13562 356 aa15.86■□□□□ 0.13
NEDD9-206ENST00000461055 TONSLQ96HA7 1378 aa15.86■□□□□ 0.13
NEDD9-206ENST00000461055 ABCC1P33527 1531 aa15.85■□□□□ 0.13
NEDD9-206ENST00000461055 PLXNC1O60486 1568 aa15.85■□□□□ 0.13
NEDD9-206ENST00000461055 SIN3AQ96ST3 1273 aa15.85■□□□□ 0.13
NEDD9-206ENST00000461055 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms