RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 EHBP1L1Q8N3D4 1523 aa15.78■□□□□ 0.12
USP39-210ENST00000459775 WDR7Q9Y4E6 1490 aa15.77■□□□□ 0.12
USP39-210ENST00000459775 KIF14Q15058 1648 aa15.77■□□□□ 0.11
USP39-210ENST00000459775 ITGAEP38570 1179 aa15.72■□□□□ 0.11
USP39-210ENST00000459775 FAM50AQ14320 339 aaKnown RBP15.71■□□□□ 0.11
USP39-210ENST00000459775 SUPT6HQ7KZ85 1726 aaKnown RBP15.71■□□□□ 0.11
USP39-210ENST00000459775 ZNF644Q9H582 1327 aaPredicted RBP15.7■□□□□ 0.1
USP39-210ENST00000459775 CCNB3Q8WWL7 1395 aa15.69■□□□□ 0.1
USP39-210ENST00000459775 FBXO41Q8TF61 875 aa15.68■□□□□ 0.1
USP39-210ENST00000459775 ZNF777Q9ULD5 760 aaPredicted RBP15.68■□□□□ 0.1
USP39-210ENST00000459775 MYOM3Q5VTT5 1437 aa15.68■□□□□ 0.1
USP39-210ENST00000459775 CD109Q6YHK3 1445 aa15.68■□□□□ 0.1
USP39-210ENST00000459775 FGD6Q6ZV73 1430 aa15.67■□□□□ 0.1
USP39-210ENST00000459775 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.66■□□□□ 0.1
USP39-210ENST00000459775 GPATCH8Q9UKJ3 1502 aaKnown RBP15.66■□□□□ 0.1
USP39-210ENST00000459775 RRBP1Q9P2E9 1410 aaKnown RBP15.66■□□□□ 0.1
USP39-210ENST00000459775 TTC37Q6PGP7 1564 aa15.65■□□□□ 0.1
USP39-210ENST00000459775 CFDP1Q9UEE9 299 aaPredicted RBP15.65■□□□□ 0.1
USP39-210ENST00000459775 ARAP3Q8WWN8 1544 aa15.65■□□□□ 0.1
USP39-210ENST00000459775 RTN4Q9NQC3 1192 aaKnown RBP15.63■□□□□ 0.09
USP39-210ENST00000459775 PLPPR3Q6T4P5 718 aa15.59■□□□□ 0.09
USP39-210ENST00000459775 ADAMTSL3P82987 1691 aa15.58■□□□□ 0.09
USP39-210ENST00000459775 CDC42BPAQ5VT25 1732 aa15.58■□□□□ 0.08
USP39-210ENST00000459775 PTPN23Q9H3S7 1636 aa15.58■□□□□ 0.08
USP39-210ENST00000459775 HNRNPMP52272 730 aaKnown RBP eCLIP15.56■□□□□ 0.08
USP39-210ENST00000459775 CHIC2Q9UKJ5 165 aa15.56■□□□□ 0.08
USP39-210ENST00000459775 PTPRKQ15262 1439 aa15.56■□□□□ 0.08
USP39-210ENST00000459775 MIA2Q96PC5 1412 aa15.56■□□□□ 0.08
USP39-210ENST00000459775 PTPRMP28827 1452 aa15.55■□□□□ 0.08
USP39-210ENST00000459775 ARXQ96QS3 562 aa15.55■□□□□ 0.08
USP39-210ENST00000459775 ARHGAP5Q13017 1502 aa15.55■□□□□ 0.08
USP39-210ENST00000459775 PLCH2O75038 1416 aa15.55■□□□□ 0.08
USP39-210ENST00000459775 CDC42BPBQ9Y5S2 1711 aa15.54■□□□□ 0.08
USP39-210ENST00000459775 ABCA9Q8IUA7 1624 aa15.54■□□□□ 0.08
USP39-210ENST00000459775 CAMSAP2Q08AD1 1489 aa15.54■□□□□ 0.08
USP39-210ENST00000459775 NEO1Q92859 1461 aa15.53■□□□□ 0.08
USP39-210ENST00000459775 TCOF1Q13428 1488 aaKnown RBP15.53■□□□□ 0.08
USP39-210ENST00000459775 PREX2Q70Z35 1606 aa15.52■□□□□ 0.08
USP39-210ENST00000459775 ITSN2Q9NZM3 1697 aa15.51■□□□□ 0.07
USP39-210ENST00000459775 EFCAB2Q5VUJ9 269 aa15.51■□□□□ 0.07
USP39-210ENST00000459775 BCORL1Q5H9F3 1711 aa15.51■□□□□ 0.07
USP39-210ENST00000459775 SAMD9LQ8IVG5 1584 aa15.5■□□□□ 0.07
USP39-210ENST00000459775 MYO5CQ9NQX4 1742 aa15.5■□□□□ 0.07
USP39-210ENST00000459775 ABCC5O15440 1437 aa15.49■□□□□ 0.07
USP39-210ENST00000459775 ARHGEF12Q9NZN5 1544 aa15.49■□□□□ 0.07
USP39-210ENST00000459775 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.48■□□□□ 0.071e-6■□□□□ 11
USP39-210ENST00000459775 FANCAO15360 1455 aa15.48■□□□□ 0.07
USP39-210ENST00000459775 RRP7BPQ9NSQ0 103 aa15.48■□□□□ 0.07
USP39-210ENST00000459775 DAPK1P53355 1430 aa15.47■□□□□ 0.07
USP39-210ENST00000459775 AFAP1Q8N556 730 aa15.46■□□□□ 0.07
USP39-210ENST00000459775 MBD5Q9P267 1494 aa15.46■□□□□ 0.07
USP39-210ENST00000459775 SYCP2Q9BX26 1530 aa15.46■□□□□ 0.07
USP39-210ENST00000459775 MADDQ8WXG6 1647 aa15.45■□□□□ 0.06
USP39-210ENST00000459775 ARHGEF40Q8TER5 1519 aa15.45■□□□□ 0.06
USP39-210ENST00000459775 LMTK3Q96Q04 1460 aa15.45■□□□□ 0.06
USP39-210ENST00000459775 CFAP74Q9C0B2 1584 aa15.44■□□□□ 0.06
USP39-210ENST00000459775 TRAPPC8Q9Y2L5 1435 aa15.44■□□□□ 0.06
USP39-210ENST00000459775 FRMPD1Q5SYB0 1578 aa15.43■□□□□ 0.06
USP39-210ENST00000459775 AKNAQ7Z591 1439 aa15.42■□□□□ 0.06
USP39-210ENST00000459775 SCAPERQ9BY12 1400 aa15.42■□□□□ 0.06
USP39-210ENST00000459775 DNMT1P26358 1616 aaKnown RBP15.41■□□□□ 0.06
USP39-210ENST00000459775 RAPGEF3O95398 923 aa15.41■□□□□ 0.06
USP39-210ENST00000459775 POGZQ7Z3K3 1410 aa15.41■□□□□ 0.06
USP39-210ENST00000459775 ABCC1P33527 1531 aa15.41■□□□□ 0.06
USP39-210ENST00000459775 TSPY4P0CV99 314 aa15.4■□□□□ 0.06
USP39-210ENST00000459775 TSPY10P0CW01 314 aa15.4■□□□□ 0.06
USP39-210ENST00000459775 KIAA1107Q9UPP5 1409 aa15.39■□□□□ 0.05
USP39-210ENST00000459775 RIMS1Q86UR5 1692 aaKnown RBP15.39■□□□□ 0.05
USP39-210ENST00000459775 C9orf84Q5VXU9 1444 aa15.38■□□□□ 0.05
USP39-210ENST00000459775 CCDC141Q6ZP82 1450 aa15.37■□□□□ 0.05
USP39-210ENST00000459775 RAB3GAP2Q9H2M9 1393 aa15.37■□□□□ 0.05
USP39-210ENST00000459775 EIF5BO60841 1220 aaKnown RBP15.37■□□□□ 0.05
USP39-210ENST00000459775 ZMYM4Q5VZL5 1548 aa15.37■□□□□ 0.05
USP39-210ENST00000459775 NAIPQ13075 1403 aa15.36■□□□□ 0.05
USP39-210ENST00000459775 ARID4BQ4LE39 1312 aaPredicted RBP15.36■□□□□ 0.05
USP39-210ENST00000459775 DENND4BO75064 1496 aaPredicted RBP15.36■□□□□ 0.05
USP39-210ENST00000459775 MYT1LQ9UL68 1186 aa15.36■□□□□ 0.05
USP39-210ENST00000459775 PLEKHH2Q8IVE3 1493 aa15.36■□□□□ 0.05
USP39-210ENST00000459775 SETD5Q9C0A6 1442 aa15.35■□□□□ 0.05
USP39-210ENST00000459775 RICTORQ6R327 1708 aa15.35■□□□□ 0.05
USP39-210ENST00000459775 ARHGEF5Q12774 1597 aa15.35■□□□□ 0.05
USP39-210ENST00000459775 NCOA1Q15788 1441 aa15.35■□□□□ 0.05
USP39-210ENST00000459775 MAGI2Q86UL8 1455 aa15.35■□□□□ 0.05
USP39-210ENST00000459775 AMER1Q5JTC6 1135 aaPredicted RBP15.34■□□□□ 0.05
USP39-210ENST00000459775 SPAG9O60271 1321 aaKnown RBP15.33■□□□□ 0.05
USP39-210ENST00000459775 HFM1A2PYH4 1435 aa15.33■□□□□ 0.04
USP39-210ENST00000459775 RSPH4AQ5TD94 716 aa15.33■□□□□ 0.04
USP39-210ENST00000459775 CROCC2H7BZ55 1655 aa15.32■□□□□ 0.04
USP39-210ENST00000459775 ZFYVE16Q7Z3T8 1539 aa15.32■□□□□ 0.04
USP39-210ENST00000459775 ANKRD30AQ9BXX3 1397 aa15.31■□□□□ 0.04
USP39-210ENST00000459775 ROCK1Q13464 1354 aa15.31■□□□□ 0.04
USP39-210ENST00000459775 KIF15Q9NS87 1388 aa15.3■□□□□ 0.04
USP39-210ENST00000459775 SHANK2Q9UPX8 1470 aa15.29■□□□□ 0.04
USP39-210ENST00000459775 CERKQ8TCT0 537 aa15.29■□□□□ 0.04
USP39-210ENST00000459775 ADGRL2O95490 1459 aa15.28■□□□□ 0.04
USP39-210ENST00000459775 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
USP39-210ENST00000459775 FER1L4A9Z1Z3 1794 aa15.27■□□□□ 0.04
USP39-210ENST00000459775 ZNF518AQ6AHZ1 1483 aa15.27■□□□□ 0.03
USP39-210ENST00000459775 TRIM52Q96A61 297 aa15.26■□□□□ 0.03
USP39-210ENST00000459775 PREX1Q8TCU6 1659 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms