RNA–Protein interactions for RNA: ENST00000454612.6

DDR1-240, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,942 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-240ENST00000454612 FYCO1Q9BQS8 1478 aa15.29■□□□□ 0.04
DDR1-240ENST00000454612 B4GALNT3Q6L9W6 998 aa15.28■□□□□ 0.04
DDR1-240ENST00000454612 ZNF644Q9H582 1327 aaPredicted RBP15.27■□□□□ 0.04
DDR1-240ENST00000454612 RTL5Q5HYW3 569 aaPredicted RBP15.27■□□□□ 0.04
DDR1-240ENST00000454612 L3MBTL2Q969R5 705 aa15.27■□□□□ 0.04
DDR1-240ENST00000454612 CFAP43Q8NDM7 1665 aa15.26■□□□□ 0.03
DDR1-240ENST00000454612 TMC1Q8TDI8 760 aa15.25■□□□□ 0.03
DDR1-240ENST00000454612 PTPRKQ15262 1439 aa15.25■□□□□ 0.03
DDR1-240ENST00000454612 FGD6Q6ZV73 1430 aa15.25■□□□□ 0.03
DDR1-240ENST00000454612 PTPRGP23470 1445 aa15.24■□□□□ 0.03
DDR1-240ENST00000454612 MPHOSPH9Q99550 1183 aa15.23■□□□□ 0.03
DDR1-240ENST00000454612 UGGT2Q9NYU1 1516 aa15.23■□□□□ 0.03
DDR1-240ENST00000454612 TSPY4P0CV99 314 aa15.22■□□□□ 0.03
DDR1-240ENST00000454612 TSPY10P0CW01 314 aa15.22■□□□□ 0.03
DDR1-240ENST00000454612 KIAA0556O60303 1618 aa15.2■□□□□ 0.02
DDR1-240ENST00000454612 NBR1Q14596 966 aa15.2■□□□□ 0.02
DDR1-240ENST00000454612 CHGAP10645 457 aaKnown RBP15.2■□□□□ 0.02
DDR1-240ENST00000454612 SAMD9Q5K651 1589 aa15.19■□□□□ 0.02
DDR1-240ENST00000454612 DISP1Q96F81 1524 aa15.19■□□□□ 0.02
DDR1-240ENST00000454612 NCOA2Q15596 1464 aa15.17■□□□□ 0.02
DDR1-240ENST00000454612 CCDC18Q5T9S5 1454 aa15.17■□□□□ 0.02
DDR1-240ENST00000454612 PLEKHD1A6NEE1 506 aa15.16■□□□□ 0.02
DDR1-240ENST00000454612 PKD2Q13563 968 aa15.16■□□□□ 0.02
DDR1-240ENST00000454612 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.16■□□□□ 0.02
DDR1-240ENST00000454612 PLB1Q6P1J6 1458 aa15.16■□□□□ 0.02
DDR1-240ENST00000454612 CCDC184Q52MB2 194 aa15.16■□□□□ 0.02
DDR1-240ENST00000454612 CARD11Q9BXL7 1154 aa15.16■□□□□ 0.02
DDR1-240ENST00000454612 DCAF11Q8TEB1 546 aa15.15■□□□□ 0.02
DDR1-240ENST00000454612 CCDC136Q96JN2 1154 aa15.15■□□□□ 0.02
DDR1-240ENST00000454612 RBM19Q9Y4C8 960 aaKnown RBP15.15■□□□□ 0.02
DDR1-240ENST00000454612 TIMELESSQ9UNS1 1208 aa15.15■□□□□ 0.02
DDR1-240ENST00000454612 NPM1P06748 294 aaKnown RBP eCLIP15.14■□□□□ 0.01
DDR1-240ENST00000454612 MYOM3Q5VTT5 1437 aa15.13■□□□□ 0.01
DDR1-240ENST00000454612 HFM1A2PYH4 1435 aa15.12■□□□□ 0.01
DDR1-240ENST00000454612 NAIPQ13075 1403 aa15.12■□□□□ 0.01
DDR1-240ENST00000454612 HECW1Q76N89 1606 aa15.12■□□□□ 0.01
DDR1-240ENST00000454612 CDK13Q14004 1512 aaKnown RBP15.12■□□□□ 0.01
DDR1-240ENST00000454612 CC2D1BQ5T0F9 858 aaKnown RBP15.11■□□□□ 0.01
DDR1-240ENST00000454612 HNRNPMP52272 730 aaKnown RBP eCLIP15.11■□□□□ 0.01
DDR1-240ENST00000454612 UACAQ9BZF9 1416 aa15.1■□□□□ 0.01
DDR1-240ENST00000454612 LRRIQ1Q96JM4 1722 aa15.1■□□□□ 0.01
DDR1-240ENST00000454612 MAGI3Q5TCQ9 1506 aa15.09■□□□□ 0.01
DDR1-240ENST00000454612 RTN4Q9NQC3 1192 aaKnown RBP15.09■□□□□ 0.01
DDR1-240ENST00000454612 EPRSP07814 1512 aaKnown RBP15.09■□□□□ 0.01
DDR1-240ENST00000454612 CYB5RLQ6IPT4 315 aa15.08■□□□□ 0
DDR1-240ENST00000454612 ERCC6L2Q5T890 1561 aa15.07■□□□□ 0
DDR1-240ENST00000454612 PTPN23Q9H3S7 1636 aa15.07■□□□□ 0
DDR1-240ENST00000454612 RAPGEF6Q8TEU7 1601 aa15.07■□□□□ 0
DDR1-240ENST00000454612 CCER2I3L3R5 266 aa15.05■□□□□ -0
DDR1-240ENST00000454612 CLASP1Q7Z460 1538 aa15.04■□□□□ -0
DDR1-240ENST00000454612 NUP153P49790 1475 aaKnown RBP15.04■□□□□ -0
DDR1-240ENST00000454612 WASHC2AQ641Q2 1341 aa15.04■□□□□ -0
DDR1-240ENST00000454612 DAXXQ9UER7 740 aaPredicted RBP15.03■□□□□ -0
DDR1-240ENST00000454612 EHBP1L1Q8N3D4 1523 aa15.02■□□□□ -0
DDR1-240ENST00000454612 C11orf95C9JLR9 678 aaPredicted RBP15.02■□□□□ -0
DDR1-240ENST00000454612 SUPT6HQ7KZ85 1726 aaKnown RBP15.02□□□□□ -0.01
DDR1-240ENST00000454612 TNNT2P45379 298 aaPredicted RBP15.01□□□□□ -0.01
DDR1-240ENST00000454612 NBPF8Q3BBV2 869 aa15.01□□□□□ -0.01
DDR1-240ENST00000454612 PLPPR3Q6T4P5 718 aa15□□□□□ -0.01
DDR1-240ENST00000454612 NUP155O75694 1391 aa14.99□□□□□ -0.01
DDR1-240ENST00000454612 NEUROD2Q15784 382 aa14.98□□□□□ -0.01
DDR1-240ENST00000454612 ST20-MTHFSA0A0A6YYL1 179 aa14.98□□□□□ -0.01
DDR1-240ENST00000454612 PRKRIP1Q9H875 184 aaPredicted RBP14.98□□□□□ -0.01
DDR1-240ENST00000454612 KDM6BO15054 1643 aa14.97□□□□□ -0.01
DDR1-240ENST00000454612 SHROOM2Q13796 1616 aa14.97□□□□□ -0.01
DDR1-240ENST00000454612 DENND4BO75064 1496 aaPredicted RBP14.96□□□□□ -0.01
DDR1-240ENST00000454612 ARHGEF11O15085 1522 aa14.96□□□□□ -0.01
DDR1-240ENST00000454612 ATP10BO94823 1461 aa14.96□□□□□ -0.02
DDR1-240ENST00000454612 TROQ12816 1431 aaPredicted RBP14.95□□□□□ -0.02
DDR1-240ENST00000454612 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.95□□□□□ -0.02
DDR1-240ENST00000454612 PPP4R2Q9NY27 417 aa14.95□□□□□ -0.02
DDR1-240ENST00000454612 KDM5BQ9UGL1 1544 aa14.94□□□□□ -0.02
DDR1-240ENST00000454612 ANP32AP39687 249 aaKnown RBP14.94□□□□□ -0.02
DDR1-240ENST00000454612 CANXP27824 592 aaKnown RBP14.93□□□□□ -0.02
DDR1-240ENST00000454612 ABCA8O94911 1581 aa14.93□□□□□ -0.02
DDR1-240ENST00000454612 TCOF1Q13428 1488 aaKnown RBP14.92□□□□□ -0.02
DDR1-240ENST00000454612 DEKP35659 375 aaKnown RBP14.92□□□□□ -0.02
DDR1-240ENST00000454612 ABCC2Q92887 1545 aa14.92□□□□□ -0.02
DDR1-240ENST00000454612 MSH5O43196 834 aa14.92□□□□□ -0.02
DDR1-240ENST00000454612 KIF7Q2M1P5 1343 aa14.9□□□□□ -0.02
DDR1-240ENST00000454612 PLIN1O60240 522 aa14.9□□□□□ -0.02
DDR1-240ENST00000454612 SAFB2Q14151 953 aaKnown RBP eCLIP14.89□□□□□ -0.03
DDR1-240ENST00000454612 NUTM2DQ5VT03 806 aaPredicted RBP14.88□□□□□ -0.03
DDR1-240ENST00000454612 MIA2Q96PC5 1412 aa14.88□□□□□ -0.03
DDR1-240ENST00000454612 ANO8Q9HCE9 1232 aaPredicted RBP14.88□□□□□ -0.03
DDR1-240ENST00000454612 LAS1LQ9Y4W2 734 aaKnown RBP14.88□□□□□ -0.03
DDR1-240ENST00000454612 WDR43Q15061 677 aaKnown RBP eCLIP14.87□□□□□ -0.03
DDR1-240ENST00000454612 ABCC5O15440 1437 aa14.86□□□□□ -0.03
DDR1-240ENST00000454612 DAPK1P53355 1430 aa14.86□□□□□ -0.03
DDR1-240ENST00000454612 ZBTB47Q9UFB7 747 aaPredicted RBP14.86□□□□□ -0.03
DDR1-240ENST00000454612 ARXQ96QS3 562 aa14.85□□□□□ -0.03
DDR1-240ENST00000454612 KIF14Q15058 1648 aa14.85□□□□□ -0.03
DDR1-240ENST00000454612 RGS3P49796 1198 aa14.84□□□□□ -0.03
DDR1-240ENST00000454612 ANKRD30BQ9BXX2 1392 aa14.83□□□□□ -0.04
DDR1-240ENST00000454612 NBPF1Q3BBV0 1214 aa14.82□□□□□ -0.04
DDR1-240ENST00000454612 AKNAQ7Z591 1439 aa14.82□□□□□ -0.04
DDR1-240ENST00000454612 KNSTRNQ9Y448 316 aa14.82□□□□□ -0.04
DDR1-240ENST00000454612 CCDC146Q8IYE0 955 aa14.81□□□□□ -0.04
DDR1-240ENST00000454612 ROCK2O75116 1388 aaKnown RBP14.81□□□□□ -0.04
DDR1-240ENST00000454612 GCC2Q8IWJ2 1684 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms