RNA–Protein interactions for RNA: ENST00000453306.4

VCX3B-204, Transcript of variable charge X-linked 3B, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3B, Length 868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3B-204ENST00000453306 PLCH2O75038 1416 aa24.79■■□□□ 1.56
VCX3B-204ENST00000453306 MAGI2Q86UL8 1455 aa24.79■■□□□ 1.56
VCX3B-204ENST00000453306 ZMYM4Q5VZL5 1548 aa24.79■■□□□ 1.56
VCX3B-204ENST00000453306 MADDQ8WXG6 1647 aa24.77■■□□□ 1.56
VCX3B-204ENST00000453306 ZFYVE16Q7Z3T8 1539 aa24.76■■□□□ 1.55
VCX3B-204ENST00000453306 EFCAB2Q5VUJ9 269 aa24.74■■□□□ 1.55
VCX3B-204ENST00000453306 SCAPERQ9BY12 1400 aa24.74■■□□□ 1.55
VCX3B-204ENST00000453306 LRRIQ1Q96JM4 1722 aa24.74■■□□□ 1.55
VCX3B-204ENST00000453306 YEATS2Q9ULM3 1422 aa24.69■■□□□ 1.54
VCX3B-204ENST00000453306 FBXO41Q8TF61 875 aa24.68■■□□□ 1.54
VCX3B-204ENST00000453306 MYO5CQ9NQX4 1742 aa24.68■■□□□ 1.54
VCX3B-204ENST00000453306 RIMS1Q86UR5 1692 aaKnown RBP24.68■■□□□ 1.54
VCX3B-204ENST00000453306 TROQ12816 1431 aaPredicted RBP24.68■■□□□ 1.54
VCX3B-204ENST00000453306 KIF14Q15058 1648 aa24.68■■□□□ 1.54
VCX3B-204ENST00000453306 CCDC18Q5T9S5 1454 aa24.66■■□□□ 1.54
VCX3B-204ENST00000453306 KANK4Q5T7N3 995 aaPredicted RBP24.66■■□□□ 1.54
VCX3B-204ENST00000453306 LMTK3Q96Q04 1460 aa24.64■■□□□ 1.53
VCX3B-204ENST00000453306 ATP10AO60312 1499 aa24.63■■□□□ 1.53
VCX3B-204ENST00000453306 MLECQ14165 292 aa24.62■■□□□ 1.53
VCX3B-204ENST00000453306 ARHGAP5Q13017 1502 aa24.61■■□□□ 1.53
VCX3B-204ENST00000453306 ZNF518AQ6AHZ1 1483 aa24.61■■□□□ 1.53
VCX3B-204ENST00000453306 C9orf84Q5VXU9 1444 aa24.61■■□□□ 1.53
VCX3B-204ENST00000453306 PLPPR3Q6T4P5 718 aa24.6■■□□□ 1.53
VCX3B-204ENST00000453306 TIAM1Q13009 1591 aa24.58■■□□□ 1.52
VCX3B-204ENST00000453306 MYT1LQ9UL68 1186 aa24.57■■□□□ 1.52
VCX3B-204ENST00000453306 MAP3K1Q13233 1512 aa24.56■■□□□ 1.52
VCX3B-204ENST00000453306 SIGLEC1Q9BZZ2 1709 aa24.56■■□□□ 1.52
VCX3B-204ENST00000453306 FER1L4A9Z1Z3 1794 aa24.54■■□□□ 1.52
VCX3B-204ENST00000453306 AFAP1Q8N556 730 aa24.53■■□□□ 1.52
VCX3B-204ENST00000453306 LRRC9Q6ZRR7 1453 aa24.52■■□□□ 1.52
VCX3B-204ENST00000453306 ARHGEF12Q9NZN5 1544 aa24.52■■□□□ 1.52
VCX3B-204ENST00000453306 KDM5CP41229 1560 aa24.52■■□□□ 1.52
VCX3B-204ENST00000453306 MTUS2Q5JR59 1369 aa24.52■■□□□ 1.52
VCX3B-204ENST00000453306 PPARGC1BQ86YN6 1023 aaKnown RBP24.51■■□□□ 1.51
VCX3B-204ENST00000453306 HSPA2P54652 639 aa24.5■■□□□ 1.51
VCX3B-204ENST00000453306 APLP2Q06481 763 aa24.49■■□□□ 1.51
VCX3B-204ENST00000453306 CDC42BPBQ9Y5S2 1711 aa24.46■■□□□ 1.51
VCX3B-204ENST00000453306 PREX2Q70Z35 1606 aa24.46■■□□□ 1.51
VCX3B-204ENST00000453306 MLH3Q9UHC1 1453 aa24.45■■□□□ 1.51
VCX3B-204ENST00000453306 REREQ9P2R6 1566 aa24.43■■□□□ 1.5
VCX3B-204ENST00000453306 ABCC1P33527 1531 aa24.42■■□□□ 1.5
VCX3B-204ENST00000453306 EHBP1L1Q8N3D4 1523 aa24.42■■□□□ 1.5
VCX3B-204ENST00000453306 DIP2CQ9Y2E4 1556 aa24.42■■□□□ 1.5
VCX3B-204ENST00000453306 ESF1Q9H501 851 aaKnown RBP24.4■■□□□ 1.5
VCX3B-204ENST00000453306 TRAPPC8Q9Y2L5 1435 aa24.39■■□□□ 1.5
VCX3B-204ENST00000453306 NCOA2Q15596 1464 aa24.38■■□□□ 1.49
VCX3B-204ENST00000453306 PREX1Q8TCU6 1659 aa24.38■■□□□ 1.49
VCX3B-204ENST00000453306 CEBPAP49715 358 aaPredicted RBP24.38■■□□□ 1.49
VCX3B-204ENST00000453306 ITSN2Q9NZM3 1697 aa24.37■■□□□ 1.49
VCX3B-204ENST00000453306 AGLP35573 1532 aa24.36■■□□□ 1.49
VCX3B-204ENST00000453306 GPATCH8Q9UKJ3 1502 aaKnown RBP24.36■■□□□ 1.49
VCX3B-204ENST00000453306 ABCA6Q8N139 1617 aa24.36■■□□□ 1.49
VCX3B-204ENST00000453306 UHRF1BP1Q6BDS2 1440 aa24.35■■□□□ 1.49
VCX3B-204ENST00000453306 ZNF777Q9ULD5 760 aaPredicted RBP24.34■■□□□ 1.49
VCX3B-204ENST00000453306 CDC42BPAQ5VT25 1732 aa24.34■■□□□ 1.49
VCX3B-204ENST00000453306 DMRT2Q9Y5R5 561 aa24.33■■□□□ 1.49
VCX3B-204ENST00000453306 CCNB3Q8WWL7 1395 aa24.3■■□□□ 1.48
VCX3B-204ENST00000453306 CNTLNQ9NXG0 1405 aa24.29■■□□□ 1.48
VCX3B-204ENST00000453306 CERKQ8TCT0 537 aa24.29■■□□□ 1.48
VCX3B-204ENST00000453306 KIDINS220Q9ULH0 1771 aa24.28■■□□□ 1.48
VCX3B-204ENST00000453306 SPAG9O60271 1321 aaKnown RBP24.28■■□□□ 1.48
VCX3B-204ENST00000453306 PLEKHH2Q8IVE3 1493 aa24.27■■□□□ 1.48
VCX3B-204ENST00000453306 CFDP1Q9UEE9 299 aaPredicted RBP24.27■■□□□ 1.48
VCX3B-204ENST00000453306 SAMD9LQ8IVG5 1584 aa24.27■■□□□ 1.48
VCX3B-204ENST00000453306 ZNF644Q9H582 1327 aaPredicted RBP24.27■■□□□ 1.48
VCX3B-204ENST00000453306 SETD1BQ9UPS6 1966 aaKnown RBP24.27■■□□□ 1.48
VCX3B-204ENST00000453306 SUPT6HQ7KZ85 1726 aaKnown RBP24.27■■□□□ 1.48
VCX3B-204ENST00000453306 KIAA1107Q9UPP5 1409 aa24.26■■□□□ 1.47
VCX3B-204ENST00000453306 SYCP2Q9BX26 1530 aa24.25■■□□□ 1.47
VCX3B-204ENST00000453306 HNRNPMP52272 730 aaKnown RBP eCLIP24.25■■□□□ 1.47
VCX3B-204ENST00000453306 C3P01024 1663 aa24.24■■□□□ 1.47
VCX3B-204ENST00000453306 MYOM3Q5VTT5 1437 aa24.21■■□□□ 1.47
VCX3B-204ENST00000453306 ATP7AQ04656 1500 aa24.18■■□□□ 1.46
VCX3B-204ENST00000453306 STRCQ7RTU9 1775 aa24.16■■□□□ 1.46
VCX3B-204ENST00000453306 PTPRTO14522 1441 aa24.15■■□□□ 1.46
VCX3B-204ENST00000453306 NPATQ14207 1427 aa24.15■■□□□ 1.46
VCX3B-204ENST00000453306 A2MP01023 1474 aa24.14■■□□□ 1.46
VCX3B-204ENST00000453306 FGD6Q6ZV73 1430 aa24.14■■□□□ 1.45
VCX3B-204ENST00000453306 MROH2AA6NES4 1674 aa24.14■■□□□ 1.45
VCX3B-204ENST00000453306 ZMYM3Q14202 1370 aa24.14■■□□□ 1.45
VCX3B-204ENST00000453306 MIA2Q96PC5 1412 aa24.13■■□□□ 1.45
VCX3B-204ENST00000453306 INO80Q9ULG1 1556 aaPredicted RBP24.12■■□□□ 1.45
VCX3B-204ENST00000453306 PPP6R1Q9UPN7 881 aa24.1■■□□□ 1.45
VCX3B-204ENST00000453306 PLXNC1O60486 1568 aa24.1■■□□□ 1.45
VCX3B-204ENST00000453306 MBD5Q9P267 1494 aa24.09■■□□□ 1.45
VCX3B-204ENST00000453306 GGT6Q6P531 493 aa24.08■■□□□ 1.45
VCX3B-204ENST00000453306 CAMSAP2Q08AD1 1489 aa24.07■■□□□ 1.44
VCX3B-204ENST00000453306 NCOA1Q15788 1441 aa24.07■■□□□ 1.44
VCX3B-204ENST00000453306 TCOF1Q13428 1488 aaKnown RBP24.06■■□□□ 1.44
VCX3B-204ENST00000453306 RTEL1-TNFRSF6BF6WH68 1400 aa24.05■■□□□ 1.44
VCX3B-204ENST00000453306 ADGBQ8N7X0 1667 aa24.05■■□□□ 1.44
VCX3B-204ENST00000453306 CLTCQ00610 1675 aaKnown RBP24.03■■□□□ 1.44
VCX3B-204ENST00000453306 RRBP1Q9P2E9 1410 aaKnown RBP24.02■■□□□ 1.44
VCX3B-204ENST00000453306 RSPH4AQ5TD94 716 aa24.02■■□□□ 1.44
VCX3B-204ENST00000453306 FAM50AQ14320 339 aaKnown RBP24.01■■□□□ 1.43
VCX3B-204ENST00000453306 CAMSAP1Q5T5Y3 1602 aa24.01■■□□□ 1.43
VCX3B-204ENST00000453306 PTPN23Q9H3S7 1636 aa24.01■■□□□ 1.43
VCX3B-204ENST00000453306 DHX29Q7Z478 1369 aaKnown RBP23.99■■□□□ 1.43
VCX3B-204ENST00000453306 ABCC5O15440 1437 aa23.98■■□□□ 1.43
VCX3B-204ENST00000453306 PTPRKQ15262 1439 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms