RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ARHGEF40Q8TER5 1519 aa31.7■■■□□ 2.66
COL9A3-202ENST00000452372 PTPRMP28827 1452 aa31.69■■■□□ 2.66
COL9A3-202ENST00000452372 ZMYM4Q5VZL5 1548 aa31.69■■■□□ 2.66
COL9A3-202ENST00000452372 SCAPERQ9BY12 1400 aa31.68■■■□□ 2.66
COL9A3-202ENST00000452372 ARID4BQ4LE39 1312 aaPredicted RBP31.68■■■□□ 2.66
COL9A3-202ENST00000452372 YEATS2Q9ULM3 1422 aa31.66■■■□□ 2.66
COL9A3-202ENST00000452372 EFCAB2Q5VUJ9 269 aa31.66■■■□□ 2.66
COL9A3-202ENST00000452372 MYO5CQ9NQX4 1742 aa31.63■■■□□ 2.65
COL9A3-202ENST00000452372 POGZQ7Z3K3 1410 aa31.62■■■□□ 2.65
COL9A3-202ENST00000452372 MAGI2Q86UL8 1455 aa31.62■■■□□ 2.65
COL9A3-202ENST00000452372 SIGLEC1Q9BZZ2 1709 aa31.62■■■□□ 2.65
COL9A3-202ENST00000452372 MADDQ8WXG6 1647 aa31.6■■■□□ 2.65
COL9A3-202ENST00000452372 ZFYVE16Q7Z3T8 1539 aa31.59■■■□□ 2.65
COL9A3-202ENST00000452372 MTUS2Q5JR59 1369 aa31.54■■■□□ 2.64
COL9A3-202ENST00000452372 CDC42BPBQ9Y5S2 1711 aa31.52■■■□□ 2.64
COL9A3-202ENST00000452372 AFAP1Q8N556 730 aa31.51■■■□□ 2.63
COL9A3-202ENST00000452372 ARHGAP5Q13017 1502 aa31.5■■■□□ 2.63
COL9A3-202ENST00000452372 TIAM1Q13009 1591 aa31.48■■■□□ 2.63
COL9A3-202ENST00000452372 ATP10AO60312 1499 aa31.48■■■□□ 2.63
COL9A3-202ENST00000452372 RIMS1Q86UR5 1692 aaKnown RBP31.48■■■□□ 2.63
COL9A3-202ENST00000452372 EHBP1L1Q8N3D4 1523 aa31.45■■■□□ 2.63
COL9A3-202ENST00000452372 ILDR1Q86SU0 546 aaPredicted RBP31.45■■■□□ 2.63
COL9A3-202ENST00000452372 MAP3K1Q13233 1512 aa31.44■■■□□ 2.62
COL9A3-202ENST00000452372 ZNF518AQ6AHZ1 1483 aa31.44■■■□□ 2.62
COL9A3-202ENST00000452372 MLECQ14165 292 aa31.43■■■□□ 2.62
COL9A3-202ENST00000452372 KDM5CP41229 1560 aa31.43■■■□□ 2.62
COL9A3-202ENST00000452372 ARHGEF12Q9NZN5 1544 aa31.41■■■□□ 2.62
COL9A3-202ENST00000452372 PREX2Q70Z35 1606 aa31.4■■■□□ 2.62
COL9A3-202ENST00000452372 CDC42BPAQ5VT25 1732 aa31.39■■■□□ 2.62
COL9A3-202ENST00000452372 C9orf84Q5VXU9 1444 aa31.39■■■□□ 2.62
COL9A3-202ENST00000452372 TRAPPC8Q9Y2L5 1435 aa31.37■■■□□ 2.61
COL9A3-202ENST00000452372 LRRC9Q6ZRR7 1453 aa31.37■■■□□ 2.61
COL9A3-202ENST00000452372 LMTK3Q96Q04 1460 aa31.37■■■□□ 2.61
COL9A3-202ENST00000452372 GPATCH8Q9UKJ3 1502 aaKnown RBP31.37■■■□□ 2.61
COL9A3-202ENST00000452372 APLP2Q06481 763 aa31.36■■■□□ 2.61
COL9A3-202ENST00000452372 CCNB3Q8WWL7 1395 aa31.34■■■□□ 2.61
COL9A3-202ENST00000452372 ABCC1P33527 1531 aa31.33■■■□□ 2.61
COL9A3-202ENST00000452372 MLH3Q9UHC1 1453 aa31.33■■■□□ 2.61
COL9A3-202ENST00000452372 KANK4Q5T7N3 995 aaPredicted RBP31.32■■■□□ 2.6
COL9A3-202ENST00000452372 FER1L4A9Z1Z3 1794 aa31.31■■■□□ 2.6
COL9A3-202ENST00000452372 PLPPR3Q6T4P5 718 aa31.31■■■□□ 2.6
COL9A3-202ENST00000452372 SUPT6HQ7KZ85 1726 aaKnown RBP31.31■■■□□ 2.6
COL9A3-202ENST00000452372 DIP2CQ9Y2E4 1556 aa31.3■■■□□ 2.6
COL9A3-202ENST00000452372 ITSN2Q9NZM3 1697 aa31.29■■■□□ 2.6
COL9A3-202ENST00000452372 NCOA2Q15596 1464 aa31.28■■■□□ 2.6
COL9A3-202ENST00000452372 CFDP1Q9UEE9 299 aaPredicted RBP31.27■■■□□ 2.6
COL9A3-202ENST00000452372 MYT1LQ9UL68 1186 aa31.26■■■□□ 2.59
COL9A3-202ENST00000452372 ABCA6Q8N139 1617 aa31.26■■■□□ 2.59
COL9A3-202ENST00000452372 REREQ9P2R6 1566 aa31.24■■■□□ 2.59
COL9A3-202ENST00000452372 HSPA2P54652 639 aa31.23■■■□□ 2.59
COL9A3-202ENST00000452372 ZNF777Q9ULD5 760 aaPredicted RBP31.23■■■□□ 2.59
COL9A3-202ENST00000452372 SAMD9LQ8IVG5 1584 aa31.22■■■□□ 2.59
COL9A3-202ENST00000452372 CEBPAP49715 358 aaPredicted RBP31.22■■■□□ 2.59
COL9A3-202ENST00000452372 KIDINS220Q9ULH0 1771 aa31.22■■■□□ 2.59
COL9A3-202ENST00000452372 HNRNPMP52272 730 aaKnown RBP eCLIP31.2■■■□□ 2.59
COL9A3-202ENST00000452372 AGLP35573 1532 aa31.16■■■□□ 2.58
COL9A3-202ENST00000452372 PLEKHH2Q8IVE3 1493 aa31.14■■■□□ 2.57
COL9A3-202ENST00000452372 SYCP2Q9BX26 1530 aa31.14■■■□□ 2.57
COL9A3-202ENST00000452372 KIAA1107Q9UPP5 1409 aa31.13■■■□□ 2.57
COL9A3-202ENST00000452372 ZNF644Q9H582 1327 aaPredicted RBP31.1■■■□□ 2.57
COL9A3-202ENST00000452372 SPAG9O60271 1321 aaKnown RBP31.09■■■□□ 2.57
COL9A3-202ENST00000452372 SETD1BQ9UPS6 1966 aaKnown RBP31.09■■■□□ 2.57
COL9A3-202ENST00000452372 MYOM3Q5VTT5 1437 aa31.05■■■□□ 2.56
COL9A3-202ENST00000452372 PREX1Q8TCU6 1659 aa31.03■■■□□ 2.56
COL9A3-202ENST00000452372 MIA2Q96PC5 1412 aa31.01■■■□□ 2.55
COL9A3-202ENST00000452372 C3P01024 1663 aa31.01■■■□□ 2.55
COL9A3-202ENST00000452372 CAMSAP2Q08AD1 1489 aa31.01■■■□□ 2.55
COL9A3-202ENST00000452372 MBD5Q9P267 1494 aa31.01■■■□□ 2.55
COL9A3-202ENST00000452372 FBXO41Q8TF61 875 aa31■■■□□ 2.55
COL9A3-202ENST00000452372 ATP7AQ04656 1500 aa30.99■■■□□ 2.55
COL9A3-202ENST00000452372 INO80Q9ULG1 1556 aaPredicted RBP30.98■■■□□ 2.55
COL9A3-202ENST00000452372 RSPH4AQ5TD94 716 aa30.96■■■□□ 2.55
COL9A3-202ENST00000452372 ESF1Q9H501 851 aaKnown RBP30.94■■■□□ 2.54
COL9A3-202ENST00000452372 PLXNC1O60486 1568 aa30.92■■■□□ 2.54
COL9A3-202ENST00000452372 CNTLNQ9NXG0 1405 aa30.92■■■□□ 2.54
COL9A3-202ENST00000452372 A2MP01023 1474 aa30.92■■■□□ 2.54
COL9A3-202ENST00000452372 UHRF1BP1Q6BDS2 1440 aa30.91■■■□□ 2.54
COL9A3-202ENST00000452372 STRCQ7RTU9 1775 aa30.91■■■□□ 2.54
COL9A3-202ENST00000452372 CCDC141Q6ZP82 1450 aa30.89■■■□□ 2.53
COL9A3-202ENST00000452372 ARHGEF5Q12774 1597 aa30.88■■■□□ 2.53
COL9A3-202ENST00000452372 ZMYM3Q14202 1370 aa30.87■■■□□ 2.53
COL9A3-202ENST00000452372 FGD6Q6ZV73 1430 aa30.87■■■□□ 2.53
COL9A3-202ENST00000452372 PTPN23Q9H3S7 1636 aa30.84■■■□□ 2.53
COL9A3-202ENST00000452372 RTEL1-TNFRSF6BF6WH68 1400 aa30.84■■■□□ 2.53
COL9A3-202ENST00000452372 MROH2AA6NES4 1674 aa30.84■■■□□ 2.53
COL9A3-202ENST00000452372 ADGBQ8N7X0 1667 aa30.82■■■□□ 2.52
COL9A3-202ENST00000452372 GGT6Q6P531 493 aa30.82■■■□□ 2.52
COL9A3-202ENST00000452372 PPARGC1BQ86YN6 1023 aaKnown RBP30.82■■■□□ 2.52
COL9A3-202ENST00000452372 TSPY4P0CV99 314 aa30.81■■■□□ 2.52
COL9A3-202ENST00000452372 TSPY10P0CW01 314 aa30.81■■■□□ 2.52
COL9A3-202ENST00000452372 TCOF1Q13428 1488 aaKnown RBP30.8■■■□□ 2.52
COL9A3-202ENST00000452372 CERKQ8TCT0 537 aa30.79■■■□□ 2.52
COL9A3-202ENST00000452372 NPATQ14207 1427 aa30.79■■■□□ 2.52
COL9A3-202ENST00000452372 CLTCQ00610 1675 aaKnown RBP30.78■■■□□ 2.52
COL9A3-202ENST00000452372 DHX29Q7Z478 1369 aaKnown RBP30.78■■■□□ 2.52
COL9A3-202ENST00000452372 DMRT2Q9Y5R5 561 aa30.77■■■□□ 2.52
COL9A3-202ENST00000452372 PPP6R1Q9UPN7 881 aa30.76■■■□□ 2.51
COL9A3-202ENST00000452372 PTPRKQ15262 1439 aa30.73■■■□□ 2.51
COL9A3-202ENST00000452372 MAST1Q9Y2H9 1570 aa30.71■■■□□ 2.51
COL9A3-202ENST00000452372 ABCC5O15440 1437 aa30.7■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms