RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 WASHC2CQ9Y4E1 1318 aa9.91□□□□□ -0.82
SYNE1-213ENST00000448038 TMF1P82094 1093 aa9.91□□□□□ -0.82
SYNE1-213ENST00000448038 FKBP8Q14318 412 aa9.9□□□□□ -0.82
SYNE1-213ENST00000448038 LRRC9Q6ZRR7 1453 aa9.9□□□□□ -0.82
SYNE1-213ENST00000448038 ZNF644Q9H582 1327 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-213ENST00000448038 MYOM3Q5VTT5 1437 aa9.89□□□□□ -0.83
SYNE1-213ENST00000448038 CFAP53Q96M91 514 aa9.89□□□□□ -0.83
SYNE1-213ENST00000448038 URB2Q14146 1524 aaKnown RBP9.88□□□□□ -0.83
SYNE1-213ENST00000448038 HSPA5P11021 654 aaKnown RBP9.88□□□□□ -0.83
SYNE1-213ENST00000448038 FAM69CQ0P6D2 419 aa9.88□□□□□ -0.83
SYNE1-213ENST00000448038 FGD6Q6ZV73 1430 aa9.88□□□□□ -0.83
SYNE1-213ENST00000448038 EFCAB5A4FU69 1503 aa9.88□□□□□ -0.83
SYNE1-213ENST00000448038 SAFB2Q14151 953 aaKnown RBP eCLIP9.88□□□□□ -0.83
SYNE1-213ENST00000448038 PPM1GO15355 546 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-213ENST00000448038 STK26Q9P289 416 aa9.88□□□□□ -0.83
SYNE1-213ENST00000448038 PHLDB1Q86UU1 1377 aa9.88□□□□□ -0.83
SYNE1-213ENST00000448038 FYCO1Q9BQS8 1478 aa9.88□□□□□ -0.83
SYNE1-213ENST00000448038 L3MBTL2Q969R5 705 aa9.87□□□□□ -0.83
SYNE1-213ENST00000448038 SYNJ2O15056 1496 aa9.87□□□□□ -0.83
SYNE1-213ENST00000448038 NCOA2Q15596 1464 aa9.86□□□□□ -0.83
SYNE1-213ENST00000448038 SRPK2P78362 688 aaKnown RBP9.86□□□□□ -0.83
SYNE1-213ENST00000448038 ROCK2O75116 1388 aaKnown RBP9.86□□□□□ -0.83
SYNE1-213ENST00000448038 CC2D1BQ5T0F9 858 aaKnown RBP9.86□□□□□ -0.83
SYNE1-213ENST00000448038 HAP1P54257 671 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-213ENST00000448038 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-213ENST00000448038 KIAA0586Q9BVV6 1533 aa9.85□□□□□ -0.83
SYNE1-213ENST00000448038 DHX57Q6P158 1386 aaKnown RBP9.85□□□□□ -0.83
SYNE1-213ENST00000448038 LMOD2Q6P5Q4 547 aa9.85□□□□□ -0.83
SYNE1-213ENST00000448038 TNNT2P45379 298 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-213ENST00000448038 SENP3-EIF4A1A0A087X0R7 540 aa9.84□□□□□ -0.83
SYNE1-213ENST00000448038 NUTM2DQ5VT03 806 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-213ENST00000448038 CUL7Q14999 1698 aa9.82□□□□□ -0.84
SYNE1-213ENST00000448038 CCDC144AA2RUR9 1427 aa9.82□□□□□ -0.84
SYNE1-213ENST00000448038 KIF15Q9NS87 1388 aa9.81□□□□□ -0.84
SYNE1-213ENST00000448038 BIVM-ERCC5R4GMW8 1640 aa9.81□□□□□ -0.84
SYNE1-213ENST00000448038 A0A0G2JS52 829 aa9.81□□□□□ -0.84
SYNE1-213ENST00000448038 ZNF608Q9ULD9 1512 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-213ENST00000448038 NUDCQ9Y266 331 aa9.81□□□□□ -0.84
SYNE1-213ENST00000448038 MAGI1Q96QZ7 1491 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-213ENST00000448038 IQGAP2Q13576 1575 aa9.81□□□□□ -0.84
SYNE1-213ENST00000448038 ARHGAP5Q13017 1502 aa9.8□□□□□ -0.84
SYNE1-213ENST00000448038 GRIN2AQ12879 1464 aa9.8□□□□□ -0.84
SYNE1-213ENST00000448038 EID1Q9Y6B2 187 aa9.79□□□□□ -0.84
SYNE1-213ENST00000448038 AFAP1Q8N556 730 aa9.79□□□□□ -0.84
SYNE1-213ENST00000448038 NEUROD2Q15784 382 aa9.79□□□□□ -0.84
SYNE1-213ENST00000448038 CCDC136Q96JN2 1154 aa9.79□□□□□ -0.84
SYNE1-213ENST00000448038 HECW1Q76N89 1606 aa9.78□□□□□ -0.84
SYNE1-213ENST00000448038 TROQ12816 1431 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-213ENST00000448038 IRX6P78412 446 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-213ENST00000448038 EHBP1L1Q8N3D4 1523 aa9.78□□□□□ -0.84
SYNE1-213ENST00000448038 MAPK8IP3Q9UPT6 1336 aa9.78□□□□□ -0.84
SYNE1-213ENST00000448038 EIF3AQ14152 1382 aaKnown RBP9.77□□□□□ -0.84
SYNE1-213ENST00000448038 U2SURPO15042 1029 aaKnown RBP9.77□□□□□ -0.85
SYNE1-213ENST00000448038 MORC1Q86VD1 984 aa9.77□□□□□ -0.85
SYNE1-213ENST00000448038 ANKRD50Q9ULJ7 1429 aa9.77□□□□□ -0.85
SYNE1-213ENST00000448038 HDGFL2Q7Z4V5 671 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-213ENST00000448038 SOX12O15370 315 aa9.76□□□□□ -0.85
SYNE1-213ENST00000448038 UACAQ9BZF9 1416 aa9.76□□□□□ -0.85
SYNE1-213ENST00000448038 TIAM1Q13009 1591 aa9.76□□□□□ -0.85
SYNE1-213ENST00000448038 RTL5Q5HYW3 569 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-213ENST00000448038 RRBP1Q9P2E9 1410 aaKnown RBP9.75□□□□□ -0.85
SYNE1-213ENST00000448038 TRAK1Q9UPV9 953 aa9.74□□□□□ -0.85
SYNE1-213ENST00000448038 EPRSP07814 1512 aaKnown RBP9.74□□□□□ -0.85
SYNE1-213ENST00000448038 CDK13Q14004 1512 aaKnown RBP9.74□□□□□ -0.85
SYNE1-213ENST00000448038 NPM2Q86SE8 214 aaKnown RBP9.74□□□□□ -0.85
SYNE1-213ENST00000448038 VGFO15240 615 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-213ENST00000448038 KTN1Q86UP2 1357 aaKnown RBP9.74□□□□□ -0.85
SYNE1-213ENST00000448038 MIA2Q96PC5 1412 aa9.73□□□□□ -0.85
SYNE1-213ENST00000448038 LAS1LQ9Y4W2 734 aaKnown RBP9.73□□□□□ -0.85
SYNE1-213ENST00000448038 CCER2I3L3R5 266 aa9.72□□□□□ -0.85
SYNE1-213ENST00000448038 PLB1Q6P1J6 1458 aa9.72□□□□□ -0.85
SYNE1-213ENST00000448038 ST20-MTHFSA0A0A6YYL1 179 aa9.72□□□□□ -0.85
SYNE1-213ENST00000448038 ANP32AP39687 249 aaKnown RBP9.71□□□□□ -0.85
SYNE1-213ENST00000448038 PNNQ9H307 717 aaKnown RBP9.71□□□□□ -0.85
SYNE1-213ENST00000448038 PCF11O94913 1555 aaKnown RBP9.71□□□□□ -0.86
SYNE1-213ENST00000448038 PAK3O75914 559 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-213ENST00000448038 PLEKHH2Q8IVE3 1493 aa9.71□□□□□ -0.86
SYNE1-213ENST00000448038 SUPT6HQ7KZ85 1726 aaKnown RBP9.71□□□□□ -0.86
SYNE1-213ENST00000448038 C9orf84Q5VXU9 1444 aa9.7□□□□□ -0.86
SYNE1-213ENST00000448038 MYH16Q9H6N6 1097 aa9.7□□□□□ -0.86
SYNE1-213ENST00000448038 SUPT16HQ9Y5B9 1047 aaKnown RBP9.7□□□□□ -0.86
SYNE1-213ENST00000448038 TERF2IPQ9NYB0 399 aa9.69□□□□□ -0.86
SYNE1-213ENST00000448038 RALBP1Q15311 655 aa9.69□□□□□ -0.86
SYNE1-213ENST00000448038 SCAPERQ9BY12 1400 aa9.69□□□□□ -0.86
SYNE1-213ENST00000448038 UPF2Q9HAU5 1272 aaKnown RBP9.68□□□□□ -0.86
SYNE1-213ENST00000448038 NUTM2FA1L443 756 aa9.68□□□□□ -0.86
SYNE1-213ENST00000448038 RAPGEF3O95398 923 aa9.67□□□□□ -0.86
SYNE1-213ENST00000448038 USP47Q96K76 1375 aa9.67□□□□□ -0.86
SYNE1-213ENST00000448038 NGDNQ8NEJ9 315 aaKnown RBP9.66□□□□□ -0.86
SYNE1-213ENST00000448038 ARHGEF11O15085 1522 aa9.66□□□□□ -0.86
SYNE1-213ENST00000448038 KIF21AQ7Z4S6 1674 aa9.66□□□□□ -0.86
SYNE1-213ENST00000448038 DAPK1P53355 1430 aa9.66□□□□□ -0.86
SYNE1-213ENST00000448038 FTSJ3Q8IY81 847 aaKnown RBP9.66□□□□□ -0.86
SYNE1-213ENST00000448038 ARXQ96QS3 562 aa9.65□□□□□ -0.86
SYNE1-213ENST00000448038 U2AF1L5P0DN76 240 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-213ENST00000448038 U2AF1Q01081 240 aaKnown RBP eCLIP9.65□□□□□ -0.87
SYNE1-213ENST00000448038 FRAT1Q92837 279 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-213ENST00000448038 STAC3Q96MF2 364 aa9.64□□□□□ -0.87
SYNE1-213ENST00000448038 HFM1A2PYH4 1435 aa9.64□□□□□ -0.87
SYNE1-213ENST00000448038 PANK3Q9H999 370 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms