RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 HNRNPUQ00839 825 aaKnown RBP eCLIP13.2□□□□□ -0.3
KLHL3-202ENST00000447439 NBPF8Q3BBV2 869 aa13.2□□□□□ -0.3
KLHL3-202ENST00000447439 NUP153P49790 1475 aaKnown RBP13.2□□□□□ -0.3
KLHL3-202ENST00000447439 DAPK1P53355 1430 aa13.19□□□□□ -0.3
KLHL3-202ENST00000447439 SLC4A1APQ9BWU0 796 aaKnown RBP13.19□□□□□ -0.3
KLHL3-202ENST00000447439 ABCC5O15440 1437 aa13.19□□□□□ -0.3
KLHL3-202ENST00000447439 EIF4G2P78344 907 aaKnown RBP eCLIP13.18□□□□□ -0.3
KLHL3-202ENST00000447439 CHMP7Q8WUX9 453 aaPredicted RBP13.18□□□□□ -0.3
KLHL3-202ENST00000447439 MIA2Q96PC5 1412 aa13.18□□□□□ -0.3
KLHL3-202ENST00000447439 IFT140Q96RY7 1462 aa13.17□□□□□ -0.3
KLHL3-202ENST00000447439 KIAA0556O60303 1618 aa13.17□□□□□ -0.3
KLHL3-202ENST00000447439 NEFLP07196 543 aa13.16□□□□□ -0.3
KLHL3-202ENST00000447439 ZNF326Q5BKZ1 582 aaKnown RBP13.16□□□□□ -0.3
KLHL3-202ENST00000447439 PLB1Q6P1J6 1458 aa13.16□□□□□ -0.3
KLHL3-202ENST00000447439 KIAA0586Q9BVV6 1533 aa13.16□□□□□ -0.3
KLHL3-202ENST00000447439 AKNAQ7Z591 1439 aa13.15□□□□□ -0.3
KLHL3-202ENST00000447439 GRIN2AQ12879 1464 aa13.15□□□□□ -0.3
KLHL3-202ENST00000447439 CFDP1Q9UEE9 299 aaPredicted RBP13.15□□□□□ -0.3
KLHL3-202ENST00000447439 POLR3GLQ9BT43 218 aa13.14□□□□□ -0.31
KLHL3-202ENST00000447439 EIF4G3O43432 1585 aaKnown RBP13.13□□□□□ -0.31
KLHL3-202ENST00000447439 ANKRD30BQ9BXX2 1392 aa13.13□□□□□ -0.31
KLHL3-202ENST00000447439 SENP3-EIF4A1A0A087X0R7 540 aa13.13□□□□□ -0.31
KLHL3-202ENST00000447439 FAM9BQ8IZU0 186 aa13.12□□□□□ -0.31
KLHL3-202ENST00000447439 CDK11AQ9UQ88 783 aaPredicted RBP13.12□□□□□ -0.31
KLHL3-202ENST00000447439 RAPGEF6Q8TEU7 1601 aa13.12□□□□□ -0.31
KLHL3-202ENST00000447439 CCDC7Q96M83 1385 aa13.09□□□□□ -0.31
KLHL3-202ENST00000447439 DNMT1P26358 1616 aaKnown RBP13.09□□□□□ -0.31
KLHL3-202ENST00000447439 ROCK1Q13464 1354 aa13.09□□□□□ -0.31
KLHL3-202ENST00000447439 KIF14Q15058 1648 aa13.09□□□□□ -0.31
KLHL3-202ENST00000447439 CAMSAP2Q08AD1 1489 aa13.09□□□□□ -0.31
KLHL3-202ENST00000447439 CEP170Q5SW79 1584 aa13.08□□□□□ -0.31
KLHL3-202ENST00000447439 JPH4Q96JJ6 628 aa13.08□□□□□ -0.31
KLHL3-202ENST00000447439 RPRD2Q5VT52 1461 aaKnown RBP13.08□□□□□ -0.32
KLHL3-202ENST00000447439 CNTLNQ9NXG0 1405 aa13.08□□□□□ -0.32
KLHL3-202ENST00000447439 TEX14Q8IWB6 1497 aa13.07□□□□□ -0.32
KLHL3-202ENST00000447439 KIF7Q2M1P5 1343 aa13.07□□□□□ -0.32
KLHL3-202ENST00000447439 TROQ12816 1431 aaPredicted RBP13.07□□□□□ -0.32
KLHL3-202ENST00000447439 PKD2Q13563 968 aa13.07□□□□□ -0.32
KLHL3-202ENST00000447439 MRS2Q9HD23 443 aa13.06□□□□□ -0.32
KLHL3-202ENST00000447439 PRKRIP1Q9H875 184 aaPredicted RBP13.06□□□□□ -0.32
KLHL3-202ENST00000447439 GPATCH8Q9UKJ3 1502 aaKnown RBP13.06□□□□□ -0.32
KLHL3-202ENST00000447439 PZPP20742 1482 aa13.06□□□□□ -0.32
KLHL3-202ENST00000447439 NCOA1Q15788 1441 aa13.05□□□□□ -0.32
KLHL3-202ENST00000447439 MYT1Q01538 1121 aa13.03□□□□□ -0.32
KLHL3-202ENST00000447439 SYNJ2O15056 1496 aa13.02□□□□□ -0.32
KLHL3-202ENST00000447439 HNRNPMP52272 730 aaKnown RBP eCLIP13.02□□□□□ -0.32
KLHL3-202ENST00000447439 KDM2AQ9Y2K7 1162 aa13.02□□□□□ -0.32
KLHL3-202ENST00000447439 PLEKHD1A6NEE1 506 aa13.01□□□□□ -0.33
KLHL3-202ENST00000447439 RBM19Q9Y4C8 960 aaKnown RBP13□□□□□ -0.33
KLHL3-202ENST00000447439 MAGI1Q96QZ7 1491 aaPredicted RBP13□□□□□ -0.33
KLHL3-202ENST00000447439 SPATA31E1Q6ZUB1 1445 aa13□□□□□ -0.33
KLHL3-202ENST00000447439 CARMIL2Q6F5E8 1435 aa12.99□□□□□ -0.33
KLHL3-202ENST00000447439 NUP155O75694 1391 aa12.99□□□□□ -0.33
KLHL3-202ENST00000447439 ITSN2Q9NZM3 1697 aa12.99□□□□□ -0.33
KLHL3-202ENST00000447439 ANKRD50Q9ULJ7 1429 aa12.98□□□□□ -0.33
KLHL3-202ENST00000447439 KIAA1107Q9UPP5 1409 aa12.98□□□□□ -0.33
KLHL3-202ENST00000447439 ANKRD30AQ9BXX3 1397 aa12.98□□□□□ -0.33
KLHL3-202ENST00000447439 ADGBQ8N7X0 1667 aa12.97□□□□□ -0.33
KLHL3-202ENST00000447439 USP47Q96K76 1375 aa12.97□□□□□ -0.33
KLHL3-202ENST00000447439 ADCY10Q96PN6 1610 aa12.97□□□□□ -0.33
KLHL3-202ENST00000447439 ATP10BO94823 1461 aa12.97□□□□□ -0.33
KLHL3-202ENST00000447439 POLR1AO95602 1720 aaPredicted RBP12.96□□□□□ -0.34
KLHL3-202ENST00000447439 NUP160Q12769 1436 aa12.95□□□□□ -0.34
KLHL3-202ENST00000447439 CROCC2H7BZ55 1655 aa12.95□□□□□ -0.34
KLHL3-202ENST00000447439 C9orf84Q5VXU9 1444 aa12.94□□□□□ -0.34
KLHL3-202ENST00000447439 TSPY4P0CV99 314 aa12.94□□□□□ -0.34
KLHL3-202ENST00000447439 TSPY10P0CW01 314 aa12.94□□□□□ -0.34
KLHL3-202ENST00000447439 DCAF11Q8TEB1 546 aa12.93□□□□□ -0.34
KLHL3-202ENST00000447439 CARD11Q9BXL7 1154 aa12.93□□□□□ -0.34
KLHL3-202ENST00000447439 B4GALNT3Q6L9W6 998 aa12.93□□□□□ -0.34
KLHL3-202ENST00000447439 BCORL1Q5H9F3 1711 aa12.93□□□□□ -0.34
KLHL3-202ENST00000447439 MBD5Q9P267 1494 aa12.92□□□□□ -0.34
KLHL3-202ENST00000447439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.92□□□□□ -0.34
KLHL3-202ENST00000447439 ADGRL2O95490 1459 aa12.92□□□□□ -0.34
KLHL3-202ENST00000447439 DHX29Q7Z478 1369 aaKnown RBP12.91□□□□□ -0.34
KLHL3-202ENST00000447439 ABCC10Q5T3U5 1492 aa12.91□□□□□ -0.34
KLHL3-202ENST00000447439 RGL3Q3MIN7 710 aa12.91□□□□□ -0.34
KLHL3-202ENST00000447439 KIF15Q9NS87 1388 aa12.91□□□□□ -0.34
KLHL3-202ENST00000447439 ST20-MTHFSA0A0A6YYL1 179 aa12.9□□□□□ -0.34
KLHL3-202ENST00000447439 ANP32EQ9BTT0 268 aa12.9□□□□□ -0.34
KLHL3-202ENST00000447439 ABCA8O94911 1581 aa12.9□□□□□ -0.34
KLHL3-202ENST00000447439 CDC42BPAQ5VT25 1732 aa12.9□□□□□ -0.34
KLHL3-202ENST00000447439 ZBED9Q6R2W3 1325 aa12.89□□□□□ -0.35
KLHL3-202ENST00000447439 PTPRGP23470 1445 aa12.89□□□□□ -0.35
KLHL3-202ENST00000447439 MSH5O43196 834 aa12.85□□□□□ -0.35
KLHL3-202ENST00000447439 SALL2Q9Y467 1007 aaPredicted RBP12.85□□□□□ -0.35
KLHL3-202ENST00000447439 KDM5CP41229 1560 aa12.85□□□□□ -0.35
KLHL3-202ENST00000447439 NBPF1Q3BBV0 1214 aa12.85□□□□□ -0.35
KLHL3-202ENST00000447439 PPP4R2Q9NY27 417 aa12.85□□□□□ -0.35
KLHL3-202ENST00000447439 TMC1Q8TDI8 760 aa12.83□□□□□ -0.36
KLHL3-202ENST00000447439 ROCK2O75116 1388 aaKnown RBP12.83□□□□□ -0.36
KLHL3-202ENST00000447439 SAMD9LQ8IVG5 1584 aa12.82□□□□□ -0.36
KLHL3-202ENST00000447439 RALGAPBQ86X10 1494 aa12.82□□□□□ -0.36
KLHL3-202ENST00000447439 SHANK2Q9UPX8 1470 aa12.81□□□□□ -0.36
KLHL3-202ENST00000447439 UHRF1BP1Q6BDS2 1440 aa12.8□□□□□ -0.36
KLHL3-202ENST00000447439 PNISRQ8TF01 805 aaKnown RBP12.8□□□□□ -0.36
KLHL3-202ENST00000447439 SYCP2Q9BX26 1530 aa12.8□□□□□ -0.36
KLHL3-202ENST00000447439 ERCC6L2Q5T890 1561 aa12.79□□□□□ -0.36
KLHL3-202ENST00000447439 CCDC141Q6ZP82 1450 aa12.79□□□□□ -0.36
KLHL3-202ENST00000447439 FAM135AQ9P2D6 1515 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms