RNA–Protein interactions for RNA: ENST00000446764.5

GARNL3-209, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-209	ENST00000446764	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.94	■■■□□ 2.86
GARNL3-209	ENST00000446764	TIAM1	Q13009	1591 aa		32.94	■■■□□ 2.86
GARNL3-209	ENST00000446764	PREX2	Q70Z35	1606 aa		32.92	■■■□□ 2.86
GARNL3-209	ENST00000446764	CCNB3	Q8WWL7	1395 aa		32.92	■■■□□ 2.86
GARNL3-209	ENST00000446764	POGZ	Q7Z3K3	1410 aa		32.91	■■■□□ 2.86
GARNL3-209	ENST00000446764	KDM4F	A0A1W2PPD8	638 aa		32.9	■■■□□ 2.86
GARNL3-209	ENST00000446764	CDC42BPB	Q9Y5S2	1711 aa		32.89	■■■□□ 2.86
GARNL3-209	ENST00000446764	RICTOR	Q6R327	1708 aa		32.88	■■■□□ 2.85
GARNL3-209	ENST00000446764	MAP3K1	Q13233	1512 aa		32.87	■■■□□ 2.85
GARNL3-209	ENST00000446764	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.86	■■■□□ 2.85
GARNL3-209	ENST00000446764	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.86	■■■□□ 2.85
GARNL3-209	ENST00000446764	LRRC9	Q6ZRR7	1453 aa		32.86	■■■□□ 2.85
GARNL3-209	ENST00000446764	KANK4	Q5T7N3	995 aa	Predicted RBP	32.85	■■■□□ 2.85
GARNL3-209	ENST00000446764	CDC42BPA	Q5VT25	1732 aa		32.85	■■■□□ 2.85
GARNL3-209	ENST00000446764	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.84	■■■□□ 2.85
GARNL3-209	ENST00000446764	AFAP1	Q8N556	730 aa		32.83	■■■□□ 2.85
GARNL3-209	ENST00000446764	ZMYM4	Q5VZL5	1548 aa		32.82	■■■□□ 2.85
GARNL3-209	ENST00000446764	NCOA2	Q15596	1464 aa		32.81	■■■□□ 2.84
GARNL3-209	ENST00000446764	ARHGEF12	Q9NZN5	1544 aa		32.81	■■■□□ 2.84
GARNL3-209	ENST00000446764	APLP2	Q06481	763 aa		32.8	■■■□□ 2.84
GARNL3-209	ENST00000446764	MAGI2	Q86UL8	1455 aa		32.8	■■■□□ 2.84
GARNL3-209	ENST00000446764	ABCC1	P33527	1531 aa		32.79	■■■□□ 2.84
GARNL3-209	ENST00000446764	ZNF518A	Q6AHZ1	1483 aa		32.79	■■■□□ 2.84
GARNL3-209	ENST00000446764	YEATS2	Q9ULM3	1422 aa		32.77	■■■□□ 2.84
GARNL3-209	ENST00000446764	TRAPPC8	Q9Y2L5	1435 aa		32.77	■■■□□ 2.84
GARNL3-209	ENST00000446764	SAMD9L	Q8IVG5	1584 aa		32.75	■■■□□ 2.83
GARNL3-209	ENST00000446764	ZFYVE16	Q7Z3T8	1539 aa		32.74	■■■□□ 2.83
GARNL3-209	ENST00000446764	ARHGEF40	Q8TER5	1519 aa		32.74	■■■□□ 2.83
GARNL3-209	ENST00000446764	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.74	■■■□□ 2.83
GARNL3-209	ENST00000446764	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.72	■■■□□ 2.83
GARNL3-209	ENST00000446764	KDM5C	P41229	1560 aa		32.71	■■■□□ 2.83
GARNL3-209	ENST00000446764	KIAA1107	Q9UPP5	1409 aa		32.71	■■■□□ 2.83
GARNL3-209	ENST00000446764	ZNF644	Q9H582	1327 aa	Predicted RBP	32.71	■■■□□ 2.83
GARNL3-209	ENST00000446764	PLEKHH2	Q8IVE3	1493 aa		32.69	■■■□□ 2.82
GARNL3-209	ENST00000446764	SYCP2	Q9BX26	1530 aa		32.67	■■■□□ 2.82
GARNL3-209	ENST00000446764	MYT1L	Q9UL68	1186 aa		32.67	■■■□□ 2.82
GARNL3-209	ENST00000446764	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.67	■■■□□ 2.82
GARNL3-209	ENST00000446764	ITSN2	Q9NZM3	1697 aa		32.66	■■■□□ 2.82
GARNL3-209	ENST00000446764	MLH3	Q9UHC1	1453 aa		32.65	■■■□□ 2.82
GARNL3-209	ENST00000446764	ATP10A	O60312	1499 aa		32.62	■■■□□ 2.81
GARNL3-209	ENST00000446764	HECW2	Q9P2P5	1572 aa		32.6	■■■□□ 2.81
GARNL3-209	ENST00000446764	MBD5	Q9P267	1494 aa		32.58	■■■□□ 2.81
GARNL3-209	ENST00000446764	C9orf84	Q5VXU9	1444 aa		32.58	■■■□□ 2.81
GARNL3-209	ENST00000446764	SPAG9	O60271	1321 aa	Known RBP	32.57	■■■□□ 2.8
GARNL3-209	ENST00000446764	CAMSAP2	Q08AD1	1489 aa		32.54	■■■□□ 2.8
GARNL3-209	ENST00000446764	MYOM3	Q5VTT5	1437 aa		32.53	■■■□□ 2.8
GARNL3-209	ENST00000446764	DIP2C	Q9Y2E4	1556 aa		32.52	■■■□□ 2.8
GARNL3-209	ENST00000446764	MIA2	Q96PC5	1412 aa		32.51	■■■□□ 2.79
GARNL3-209	ENST00000446764	SIGLEC1	Q9BZZ2	1709 aa		32.49	■■■□□ 2.79
GARNL3-209	ENST00000446764	RSPH4A	Q5TD94	716 aa		32.48	■■■□□ 2.79
GARNL3-209	ENST00000446764	ABCA6	Q8N139	1617 aa		32.48	■■■□□ 2.79
GARNL3-209	ENST00000446764	BCORL1	Q5H9F3	1711 aa		32.47	■■■□□ 2.79
GARNL3-209	ENST00000446764	KIDINS220	Q9ULH0	1771 aa		32.47	■■■□□ 2.79
GARNL3-209	ENST00000446764	ADAMTSL3	P82987	1691 aa		32.46	■■■□□ 2.79
GARNL3-209	ENST00000446764	MLEC	Q14165	292 aa		32.46	■■■□□ 2.79
GARNL3-209	ENST00000446764	RERE	Q9P2R6	1566 aa		32.44	■■■□□ 2.78
GARNL3-209	ENST00000446764	CCDC141	Q6ZP82	1450 aa		32.43	■■■□□ 2.78
GARNL3-209	ENST00000446764	ATP7A	Q04656	1500 aa		32.43	■■■□□ 2.78
GARNL3-209	ENST00000446764	INO80	Q9ULG1	1556 aa	Predicted RBP	32.41	■■■□□ 2.78
GARNL3-209	ENST00000446764	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.4	■■■□□ 2.78
GARNL3-209	ENST00000446764	ARHGEF5	Q12774	1597 aa		32.36	■■■□□ 2.77
GARNL3-209	ENST00000446764	AGL	P35573	1532 aa		32.36	■■■□□ 2.77
GARNL3-209	ENST00000446764	PTPRM	P28827	1452 aa		32.36	■■■□□ 2.77
GARNL3-209	ENST00000446764	TSPY4	P0CV99	314 aa		32.36	■■■□□ 2.77
GARNL3-209	ENST00000446764	TSPY10	P0CW01	314 aa		32.36	■■■□□ 2.77
GARNL3-209	ENST00000446764	MADD	Q8WXG6	1647 aa		32.36	■■■□□ 2.77
GARNL3-209	ENST00000446764	FGD6	Q6ZV73	1430 aa		32.34	■■■□□ 2.77
GARNL3-209	ENST00000446764	A2M	P01023	1474 aa		32.32	■■■□□ 2.76
GARNL3-209	ENST00000446764	PTPN23	Q9H3S7	1636 aa		32.28	■■■□□ 2.76
GARNL3-209	ENST00000446764	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.27	■■■□□ 2.76
GARNL3-209	ENST00000446764	TCOF1	Q13428	1488 aa	Known RBP	32.27	■■■□□ 2.76
GARNL3-209	ENST00000446764	PLXNC1	O60486	1568 aa		32.24	■■■□□ 2.75
GARNL3-209	ENST00000446764	DHX29	Q7Z478	1369 aa	Known RBP	32.24	■■■□□ 2.75
GARNL3-209	ENST00000446764	RIMS1	Q86UR5	1692 aa	Known RBP	32.23	■■■□□ 2.75
GARNL3-209	ENST00000446764	ABCC5	O15440	1437 aa		32.22	■■■□□ 2.75
GARNL3-209	ENST00000446764	MAST1	Q9Y2H9	1570 aa		32.19	■■■□□ 2.74
GARNL3-209	ENST00000446764	PLPPR3	Q6T4P5	718 aa		32.19	■■■□□ 2.74
GARNL3-209	ENST00000446764	ADGB	Q8N7X0	1667 aa		32.18	■■■□□ 2.74
GARNL3-209	ENST00000446764	DAPK1	P53355	1430 aa		32.17	■■■□□ 2.74
GARNL3-209	ENST00000446764	FAM50A	Q14320	339 aa	Known RBP	32.16	■■■□□ 2.74
GARNL3-209	ENST00000446764	ESF1	Q9H501	851 aa	Known RBP	32.16	■■■□□ 2.74
GARNL3-209	ENST00000446764	FER1L4	A9Z1Z3	1794 aa		32.15	■■■□□ 2.74
GARNL3-209	ENST00000446764	GGT6	Q6P531	493 aa		32.15	■■■□□ 2.74
GARNL3-209	ENST00000446764	CEBPA	P49715	358 aa	Predicted RBP	32.13	■■■□□ 2.73
GARNL3-209	ENST00000446764	SHANK2	Q9UPX8	1470 aa		32.12	■■■□□ 2.73
GARNL3-209	ENST00000446764	KIF3B	O15066	747 aa		32.12	■■■□□ 2.73
GARNL3-209	ENST00000446764	DNMT1	P26358	1616 aa	Known RBP	32.09	■■■□□ 2.73
GARNL3-209	ENST00000446764	CNTLN	Q9NXG0	1405 aa		32.09	■■■□□ 2.73
GARNL3-209	ENST00000446764	PPP6R1	Q9UPN7	881 aa		32.07	■■■□□ 2.72
GARNL3-209	ENST00000446764	CHIC2	Q9UKJ5	165 aa		32.06	■■■□□ 2.72
GARNL3-209	ENST00000446764	RRP7BP	Q9NSQ0	103 aa		32.05	■■■□□ 2.72
GARNL3-209	ENST00000446764	KIF15	Q9NS87	1388 aa		32.03	■■■□□ 2.72
GARNL3-209	ENST00000446764	CROCC2	H7BZ55	1655 aa		32.02	■■■□□ 2.72
GARNL3-209	ENST00000446764	ZMYM3	Q14202	1370 aa		32	■■■□□ 2.71
GARNL3-209	ENST00000446764	ANKRD30A	Q9BXX3	1397 aa		31.99	■■■□□ 2.71
GARNL3-209	ENST00000446764	DUOX2	Q9NRD8	1548 aa		31.99	■■■□□ 2.71
GARNL3-209	ENST00000446764	NCOA1	Q15788	1441 aa		31.96	■■■□□ 2.71
GARNL3-209	ENST00000446764	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.94	■■■□□ 2.7
GARNL3-209	ENST00000446764	LMTK3	Q96Q04	1460 aa		31.94	■■■□□ 2.7
GARNL3-209	ENST00000446764	PTPRK	Q15262	1439 aa		31.93	■■■□□ 2.7

Retrieved 100 of 20,778 RNA–protein pairs in 65 ms