RNA–Protein interactions for RNA: ENST00000444746.6

RIF1-205, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 7,897 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-205ENST00000444746 CDCA8Q53HL2 280 aa10.35□□□□□ -0.75
RIF1-205ENST00000444746 DDRGK1Q96HY6 314 aa10.35□□□□□ -0.75
RIF1-205ENST00000444746 NOP58Q9Y2X3 529 aaKnown RBP10.35□□□□□ -0.75
RIF1-205ENST00000444746 FOXD4L1Q9NU39 408 aa10.35□□□□□ -0.75
RIF1-205ENST00000444746 NUP155O75694 1391 aa10.35□□□□□ -0.75
RIF1-205ENST00000444746 NPHP1O15259 732 aa10.34□□□□□ -0.75
RIF1-205ENST00000444746 PLIN1O60240 522 aa10.34□□□□□ -0.75
RIF1-205ENST00000444746 U2AF1L5P0DN76 240 aaPredicted RBP10.34□□□□□ -0.75
RIF1-205ENST00000444746 U2AF1Q01081 240 aaKnown RBP eCLIP10.34□□□□□ -0.752e-6■■■■□ 20.3
RIF1-205ENST00000444746 LTV1Q96GA3 475 aaPredicted RBP10.34□□□□□ -0.75
RIF1-205ENST00000444746 NACADO15069 1562 aa10.33□□□□□ -0.76
RIF1-205ENST00000444746 BAZ1AQ9NRL2 1556 aaPredicted RBP10.33□□□□□ -0.76
RIF1-205ENST00000444746 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.33□□□□□ -0.76
RIF1-205ENST00000444746 ROCK2O75116 1388 aaKnown RBP10.33□□□□□ -0.76
RIF1-205ENST00000444746 HSP90AB1P08238 724 aaKnown RBP10.33□□□□□ -0.76
RIF1-205ENST00000444746 TRAK1Q9UPV9 953 aa10.33□□□□□ -0.76
RIF1-205ENST00000444746 VPS8Q8N3P4 1428 aa10.33□□□□□ -0.76
RIF1-205ENST00000444746 ARHGAP35Q9NRY4 1499 aa10.32□□□□□ -0.76
RIF1-205ENST00000444746 PTMAP06454 111 aaKnown RBP10.32□□□□□ -0.76
RIF1-205ENST00000444746 BCL2L13Q9BXK5 485 aa10.31□□□□□ -0.76
RIF1-205ENST00000444746 ELL2O00472 640 aaPredicted RBP10.31□□□□□ -0.76
RIF1-205ENST00000444746 WIZO95785 1651 aa10.31□□□□□ -0.76
RIF1-205ENST00000444746 NOL8Q76FK4 1167 aaKnown RBP10.31□□□□□ -0.76
RIF1-205ENST00000444746 SLC4A3P48751 1232 aa10.3□□□□□ -0.76
RIF1-205ENST00000444746 GZF1Q9H116 711 aaPredicted RBP10.3□□□□□ -0.76
RIF1-205ENST00000444746 RAPGEF2Q9Y4G8 1499 aa10.3□□□□□ -0.76
RIF1-205ENST00000444746 TRIM44Q96DX7 344 aaPredicted RBP10.3□□□□□ -0.76
RIF1-205ENST00000444746 ITPRIPQ8IWB1 547 aa10.3□□□□□ -0.76
RIF1-205ENST00000444746 SLKQ9H2G2 1235 aaPredicted RBP10.3□□□□□ -0.76
RIF1-205ENST00000444746 CCDC9Q9Y3X0 531 aaKnown RBP10.29□□□□□ -0.76
RIF1-205ENST00000444746 KCNJ4P48050 445 aa10.28□□□□□ -0.76
RIF1-205ENST00000444746 TCERG1O14776 1098 aaKnown RBP10.28□□□□□ -0.76
RIF1-205ENST00000444746 ARID3AQ99856 593 aa10.28□□□□□ -0.76
RIF1-205ENST00000444746 TSHZ2Q9NRE2 1034 aa10.28□□□□□ -0.76
RIF1-205ENST00000444746 RCAN3Q9UKA8 241 aa10.27□□□□□ -0.76
RIF1-205ENST00000444746 FHAD1B1AJZ9 1412 aa10.27□□□□□ -0.76
RIF1-205ENST00000444746 CASC1Q6TDU7 716 aa10.27□□□□□ -0.77
RIF1-205ENST00000444746 CSB-PGBD3P0DP91 1061 aa10.27□□□□□ -0.77
RIF1-205ENST00000444746 DNTTIP2Q5QJE6 756 aaKnown RBP10.27□□□□□ -0.77
RIF1-205ENST00000444746 KANK1Q14678 1352 aa10.27□□□□□ -0.77
RIF1-205ENST00000444746 FGD1P98174 961 aa10.26□□□□□ -0.77
RIF1-205ENST00000444746 NAP1L5Q96NT1 182 aaPredicted RBP10.26□□□□□ -0.77
RIF1-205ENST00000444746 FOXD4L5Q5VV16 416 aaPredicted RBP10.26□□□□□ -0.77
RIF1-205ENST00000444746 FOXD4L4Q8WXT5 416 aaPredicted RBP10.26□□□□□ -0.77
RIF1-205ENST00000444746 ZNF644Q9H582 1327 aaPredicted RBP10.26□□□□□ -0.77
RIF1-205ENST00000444746 DEKP35659 375 aaKnown RBP10.26□□□□□ -0.77
RIF1-205ENST00000444746 KTN1Q86UP2 1357 aaKnown RBP10.26□□□□□ -0.77
RIF1-205ENST00000444746 ST20-MTHFSA0A0A6YYL1 179 aa10.26□□□□□ -0.77
RIF1-205ENST00000444746 SLC4A10Q6U841 1118 aa10.26□□□□□ -0.77
RIF1-205ENST00000444746 MFAP1P55081 439 aaKnown RBP10.25□□□□□ -0.77
RIF1-205ENST00000444746 GOLGA6L22H0YM25 854 aa10.25□□□□□ -0.77
RIF1-205ENST00000444746 RTF1Q92541 710 aaKnown RBP10.24□□□□□ -0.77
RIF1-205ENST00000444746 PANK3Q9H999 370 aa10.24□□□□□ -0.77
RIF1-205ENST00000444746 HDGFL2Q7Z4V5 671 aaPredicted RBP10.24□□□□□ -0.77
RIF1-205ENST00000444746 CCER2I3L3R5 266 aa10.23□□□□□ -0.77
RIF1-205ENST00000444746 NECTIN2Q92692 538 aa10.23□□□□□ -0.77
RIF1-205ENST00000444746 ISY1Q9ULR0 285 aaKnown RBP10.23□□□□□ -0.77
RIF1-205ENST00000444746 JPH4Q96JJ6 628 aa10.22□□□□□ -0.77
RIF1-205ENST00000444746 EFCAB2Q5VUJ9 269 aa10.22□□□□□ -0.77
RIF1-205ENST00000444746 CYB5RLQ6IPT4 315 aa10.22□□□□□ -0.77
RIF1-205ENST00000444746 ZNF428Q96B54 188 aa10.22□□□□□ -0.77
RIF1-205ENST00000444746 WASHC2CQ9Y4E1 1318 aa10.21□□□□□ -0.77
RIF1-205ENST00000444746 EXOC6Q8TAG9 804 aa10.21□□□□□ -0.77
RIF1-205ENST00000444746 CHMP3Q9Y3E7 222 aa10.21□□□□□ -0.78
RIF1-205ENST00000444746 DHX57Q6P158 1386 aaKnown RBP10.21□□□□□ -0.78
RIF1-205ENST00000444746 SMC4Q9NTJ3 1288 aa10.21□□□□□ -0.78
RIF1-205ENST00000444746 HSCBQ8IWL3 235 aa10.2□□□□□ -0.78
RIF1-205ENST00000444746 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.2□□□□□ -0.78
RIF1-205ENST00000444746 MINK1Q8N4C8 1332 aaPredicted RBP10.2□□□□□ -0.78
RIF1-205ENST00000444746 NGEFQ8N5V2 710 aa10.2□□□□□ -0.78
RIF1-205ENST00000444746 GOLGA2Q08379 1002 aa10.19□□□□□ -0.78
RIF1-205ENST00000444746 ZRSR1Q15695 479 aaKnown RBP10.19□□□□□ -0.78
RIF1-205ENST00000444746 ERICH6BQ5W0A0 696 aa10.19□□□□□ -0.78
RIF1-205ENST00000444746 NCBP3Q53F19 620 aaKnown RBP10.19□□□□□ -0.78
RIF1-205ENST00000444746 SPAG9O60271 1321 aaKnown RBP10.19□□□□□ -0.78
RIF1-205ENST00000444746 FOXD4L6Q3SYB3 417 aaPredicted RBP10.19□□□□□ -0.78
RIF1-205ENST00000444746 FOXD4L3Q6VB84 417 aaPredicted RBP10.19□□□□□ -0.78
RIF1-205ENST00000444746 ANKRD30AQ9BXX3 1397 aa10.18□□□□□ -0.78
RIF1-205ENST00000444746 NGDNQ8NEJ9 315 aaKnown RBP10.18□□□□□ -0.78
RIF1-205ENST00000444746 CDK11BP21127 795 aaKnown RBP10.17□□□□□ -0.78
RIF1-205ENST00000444746 RAD54L2Q9Y4B4 1467 aa10.16□□□□□ -0.78
RIF1-205ENST00000444746 NUTM2GQ5VZR2 741 aa10.16□□□□□ -0.78
RIF1-205ENST00000444746 CARMIL2Q6F5E8 1435 aa10.16□□□□□ -0.78
RIF1-205ENST00000444746 ANO8Q9HCE9 1232 aaPredicted RBP10.16□□□□□ -0.78
RIF1-205ENST00000444746 CRBNQ96SW2 442 aa10.16□□□□□ -0.78
RIF1-205ENST00000444746 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.16□□□□□ -0.78
RIF1-205ENST00000444746 TRIM6-TRIM34B2RNG4 842 aa10.15□□□□□ -0.78
RIF1-205ENST00000444746 CADPSQ9ULU8 1353 aa10.15□□□□□ -0.78
RIF1-205ENST00000444746 PDS5BQ9NTI5 1447 aa10.14□□□□□ -0.79
RIF1-205ENST00000444746 FMN1Q68DA7 1419 aa10.14□□□□□ -0.79
RIF1-205ENST00000444746 COG6Q9Y2V7 657 aa10.14□□□□□ -0.79
RIF1-205ENST00000444746 AMPHP49418 695 aa10.14□□□□□ -0.79
RIF1-205ENST00000444746 APAF1O14727 1248 aa10.14□□□□□ -0.79
RIF1-205ENST00000444746 RALBP1Q15311 655 aa10.13□□□□□ -0.79
RIF1-205ENST00000444746 TMEM132EQ6IEE7 984 aa10.13□□□□□ -0.79
RIF1-205ENST00000444746 PNNQ9H307 717 aaKnown RBP10.13□□□□□ -0.79
RIF1-205ENST00000444746 CLSTN1O94985 981 aa10.13□□□□□ -0.79
RIF1-205ENST00000444746 SMARCA2P51531 1590 aa10.12□□□□□ -0.79
RIF1-205ENST00000444746 GOLGA6L4A6NEF3 574 aa10.12□□□□□ -0.79
RIF1-205ENST00000444746 EIF2S2P20042 333 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms