RNA–Protein interactions for RNA: ENST00000444268.1

COL28A1-204, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 1,755 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-204ENST00000444268 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.62■□□□□ 0.57
COL28A1-204ENST00000444268 MIA2Q96PC5 1412 aa18.61■□□□□ 0.57
COL28A1-204ENST00000444268 DNAJC5Q9H3Z4 198 aa18.61■□□□□ 0.57
COL28A1-204ENST00000444268 TIMELESSQ9UNS1 1208 aa18.6■□□□□ 0.57
COL28A1-204ENST00000444268 GPATCH8Q9UKJ3 1502 aaKnown RBP18.6■□□□□ 0.57
COL28A1-204ENST00000444268 CDC42BPAQ5VT25 1732 aa18.59■□□□□ 0.57
COL28A1-204ENST00000444268 AKNAQ7Z591 1439 aa18.57■□□□□ 0.56
COL28A1-204ENST00000444268 ZNF644Q9H582 1327 aaPredicted RBP18.55■□□□□ 0.56
COL28A1-204ENST00000444268 CENPBP07199 599 aaPredicted RBP18.55■□□□□ 0.56
COL28A1-204ENST00000444268 GCC2Q8IWJ2 1684 aa18.55■□□□□ 0.56
COL28A1-204ENST00000444268 ITSN2Q9NZM3 1697 aa18.55■□□□□ 0.56
COL28A1-204ENST00000444268 CFDP1Q9UEE9 299 aaPredicted RBP18.53■□□□□ 0.56
COL28A1-204ENST00000444268 CDC42BPBQ9Y5S2 1711 aa18.53■□□□□ 0.56
COL28A1-204ENST00000444268 PREX2Q70Z35 1606 aa18.53■□□□□ 0.56
COL28A1-204ENST00000444268 ACIN1Q9UKV3 1341 aaKnown RBP18.52■□□□□ 0.56
COL28A1-204ENST00000444268 ZNF777Q9ULD5 760 aaPredicted RBP18.52■□□□□ 0.55
COL28A1-204ENST00000444268 NAIPQ13075 1403 aa18.52■□□□□ 0.55
COL28A1-204ENST00000444268 PTPRKQ15262 1439 aa18.51■□□□□ 0.55
COL28A1-204ENST00000444268 MYO5CQ9NQX4 1742 aa18.51■□□□□ 0.55
COL28A1-204ENST00000444268 ABCA9Q8IUA7 1624 aa18.5■□□□□ 0.55
COL28A1-204ENST00000444268 CAMSAP2Q08AD1 1489 aa18.48■□□□□ 0.55
COL28A1-204ENST00000444268 ARHGAP5Q13017 1502 aa18.48■□□□□ 0.55
COL28A1-204ENST00000444268 PLCH2O75038 1416 aa18.46■□□□□ 0.55
COL28A1-204ENST00000444268 SAMD9LQ8IVG5 1584 aa18.46■□□□□ 0.55
COL28A1-204ENST00000444268 DIP2BQ9P265 1576 aa18.44■□□□□ 0.54
COL28A1-204ENST00000444268 DNMT1P26358 1616 aaKnown RBP18.43■□□□□ 0.54
COL28A1-204ENST00000444268 CD109Q6YHK3 1445 aa18.41■□□□□ 0.54
COL28A1-204ENST00000444268 FAM69CQ0P6D2 419 aa18.41■□□□□ 0.54
COL28A1-204ENST00000444268 ROCK1Q13464 1354 aa18.41■□□□□ 0.54
COL28A1-204ENST00000444268 HNRNPMP52272 730 aaKnown RBP eCLIP18.4■□□□□ 0.54
COL28A1-204ENST00000444268 MIER1Q8N108 512 aa18.4■□□□□ 0.54
COL28A1-204ENST00000444268 ABCC5O15440 1437 aa18.39■□□□□ 0.53
COL28A1-204ENST00000444268 GLI2P10070 1586 aa18.39■□□□□ 0.53
COL28A1-204ENST00000444268 MAP3K4Q9Y6R4 1608 aa18.38■□□□□ 0.53
COL28A1-204ENST00000444268 SYCP2Q9BX26 1530 aa18.38■□□□□ 0.53
COL28A1-204ENST00000444268 EFCAB2Q5VUJ9 269 aa18.38■□□□□ 0.53
COL28A1-204ENST00000444268 CHIC2Q9UKJ5 165 aa18.38■□□□□ 0.53
COL28A1-204ENST00000444268 DAPK1P53355 1430 aa18.38■□□□□ 0.53
COL28A1-204ENST00000444268 FANCAO15360 1455 aa18.38■□□□□ 0.53
COL28A1-204ENST00000444268 ARAP3Q8WWN8 1544 aa18.38■□□□□ 0.53
COL28A1-204ENST00000444268 ARHGEF12Q9NZN5 1544 aa18.37■□□□□ 0.53
COL28A1-204ENST00000444268 NEUROD1Q13562 356 aa18.37■□□□□ 0.53
COL28A1-204ENST00000444268 SIN3AQ96ST3 1273 aa18.37■□□□□ 0.53
COL28A1-204ENST00000444268 TONSLQ96HA7 1378 aa18.36■□□□□ 0.53
COL28A1-204ENST00000444268 KIF13AQ9H1H9 1805 aa18.36■□□□□ 0.53
COL28A1-204ENST00000444268 MBD5Q9P267 1494 aa18.36■□□□□ 0.53
COL28A1-204ENST00000444268 ABCC1P33527 1531 aa18.35■□□□□ 0.53
COL28A1-204ENST00000444268 CROCC2H7BZ55 1655 aa18.33■□□□□ 0.52
COL28A1-204ENST00000444268 ADGBQ8N7X0 1667 aa18.33■□□□□ 0.52
COL28A1-204ENST00000444268 TSPOAP1O95153 1857 aa18.33■□□□□ 0.52
COL28A1-204ENST00000444268 PPP1R15AO75807 674 aaPredicted RBP18.32■□□□□ 0.52
COL28A1-204ENST00000444268 ARHGEF5Q12774 1597 aa18.32■□□□□ 0.52
COL28A1-204ENST00000444268 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
COL28A1-204ENST00000444268 PPRC1Q5VV67 1664 aaKnown RBP18.31■□□□□ 0.52
COL28A1-204ENST00000444268 TRAPPC8Q9Y2L5 1435 aa18.3■□□□□ 0.52
COL28A1-204ENST00000444268 RRP7BPQ9NSQ0 103 aa18.3■□□□□ 0.52
COL28A1-204ENST00000444268 ADGRL1O94910 1474 aa18.3■□□□□ 0.52
COL28A1-204ENST00000444268 PLEKHH2Q8IVE3 1493 aa18.3■□□□□ 0.52
COL28A1-204ENST00000444268 KIAA1107Q9UPP5 1409 aa18.3■□□□□ 0.52
COL28A1-204ENST00000444268 CCDC141Q6ZP82 1450 aa18.29■□□□□ 0.52
COL28A1-204ENST00000444268 SCAPERQ9BY12 1400 aa18.28■□□□□ 0.52
COL28A1-204ENST00000444268 KDM6BO15054 1643 aa18.27■□□□□ 0.51
COL28A1-204ENST00000444268 C9orf84Q5VXU9 1444 aa18.27■□□□□ 0.51
COL28A1-204ENST00000444268 CFAP74Q9C0B2 1584 aa18.26■□□□□ 0.51
COL28A1-204ENST00000444268 AFAP1Q8N556 730 aa18.26■□□□□ 0.51
COL28A1-204ENST00000444268 ADGRL2O95490 1459 aa18.25■□□□□ 0.51
COL28A1-204ENST00000444268 SHANK2Q9UPX8 1470 aa18.24■□□□□ 0.51
COL28A1-204ENST00000444268 TRIM52Q96A61 297 aa18.24■□□□□ 0.51
COL28A1-204ENST00000444268 NEO1Q92859 1461 aa18.24■□□□□ 0.51
COL28A1-204ENST00000444268 TSPY4P0CV99 314 aa18.23■□□□□ 0.51
COL28A1-204ENST00000444268 TSPY10P0CW01 314 aa18.23■□□□□ 0.51
COL28A1-204ENST00000444268 NCOA1Q15788 1441 aa18.22■□□□□ 0.51
COL28A1-204ENST00000444268 TRHP20396 242 aaPredicted RBP18.22■□□□□ 0.51
COL28A1-204ENST00000444268 RSPH4AQ5TD94 716 aa18.22■□□□□ 0.51
COL28A1-204ENST00000444268 DENND4BO75064 1496 aaPredicted RBP18.21■□□□□ 0.51
COL28A1-204ENST00000444268 MPHOSPH9Q99550 1183 aa18.2■□□□□ 0.5
COL28A1-204ENST00000444268 MAST1Q9Y2H9 1570 aa18.2■□□□□ 0.5
COL28A1-204ENST00000444268 RAPGEF3O95398 923 aa18.19■□□□□ 0.5
COL28A1-204ENST00000444268 YTHDC1Q96MU7 727 aaKnown RBP18.19■□□□□ 0.5
COL28A1-204ENST00000444268 ANKRD30AQ9BXX3 1397 aa18.18■□□□□ 0.5
COL28A1-204ENST00000444268 POGZQ7Z3K3 1410 aa18.18■□□□□ 0.5
COL28A1-204ENST00000444268 TEX14Q8IWB6 1497 aa18.18■□□□□ 0.5
COL28A1-204ENST00000444268 SPAG9O60271 1321 aaKnown RBP18.17■□□□□ 0.5
COL28A1-204ENST00000444268 ZFYVE16Q7Z3T8 1539 aa18.17■□□□□ 0.5
COL28A1-204ENST00000444268 ZNF518AQ6AHZ1 1483 aa18.16■□□□□ 0.5
COL28A1-204ENST00000444268 KIF15Q9NS87 1388 aa18.15■□□□□ 0.5
COL28A1-204ENST00000444268 INO80Q9ULG1 1556 aaPredicted RBP18.15■□□□□ 0.5
COL28A1-204ENST00000444268 RICTORQ6R327 1708 aa18.15■□□□□ 0.5
COL28A1-204ENST00000444268 FRMPD1Q5SYB0 1578 aa18.14■□□□□ 0.49
COL28A1-204ENST00000444268 RPRD2Q5VT52 1461 aaKnown RBP18.14■□□□□ 0.49
COL28A1-204ENST00000444268 ATP7AQ04656 1500 aa18.14■□□□□ 0.49
COL28A1-204ENST00000444268 KDM5CP41229 1560 aa18.14■□□□□ 0.49
COL28A1-204ENST00000444268 PLXNC1O60486 1568 aa18.13■□□□□ 0.49
COL28A1-204ENST00000444268 COL17A1Q9UMD9 1497 aaPredicted RBP18.13■□□□□ 0.49
COL28A1-204ENST00000444268 MYT1LQ9UL68 1186 aa18.13■□□□□ 0.49
COL28A1-204ENST00000444268 KIDINS220Q9ULH0 1771 aa18.12■□□□□ 0.49
COL28A1-204ENST00000444268 GTF3C3Q9Y5Q9 886 aa18.12■□□□□ 0.49
COL28A1-204ENST00000444268 RTEL1-TNFRSF6BF6WH68 1400 aa18.11■□□□□ 0.49
COL28A1-204ENST00000444268 ANKRD30BQ9BXX2 1392 aa18.11■□□□□ 0.49
COL28A1-204ENST00000444268 ANKRD50Q9ULJ7 1429 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms