RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 CAMSAP2Q08AD1 1489 aa11.97□□□□□ -0.49
CCDC39-201ENST00000442201 ASXL2Q76L83 1435 aa11.97□□□□□ -0.49
CCDC39-201ENST00000442201 RAB3GAP2Q9H2M9 1393 aa11.96□□□□□ -0.49
CCDC39-201ENST00000442201 RIMBP3CA6NJZ7 1639 aa11.96□□□□□ -0.5
CCDC39-201ENST00000442201 RIMBP3BA6NNM3 1639 aa11.96□□□□□ -0.5
CCDC39-201ENST00000442201 RIMBP3Q9UFD9 1639 aa11.96□□□□□ -0.5
CCDC39-201ENST00000442201 CDC42BPAQ5VT25 1732 aa11.95□□□□□ -0.5
CCDC39-201ENST00000442201 CHIC2Q9UKJ5 165 aa11.95□□□□□ -0.5
CCDC39-201ENST00000442201 DAPK1P53355 1430 aa11.95□□□□□ -0.5
CCDC39-201ENST00000442201 TTC37Q6PGP7 1564 aa11.95□□□□□ -0.5
CCDC39-201ENST00000442201 ABCC5O15440 1437 aa11.94□□□□□ -0.5
CCDC39-201ENST00000442201 HFM1A2PYH4 1435 aa11.94□□□□□ -0.5
CCDC39-201ENST00000442201 BCL11AQ9H165 835 aa11.93□□□□□ -0.5
CCDC39-201ENST00000442201 PREX2Q70Z35 1606 aa11.93□□□□□ -0.5
CCDC39-201ENST00000442201 PLCH2O75038 1416 aa11.93□□□□□ -0.5
CCDC39-201ENST00000442201 ARHGAP5Q13017 1502 aa11.93□□□□□ -0.5
CCDC39-201ENST00000442201 DNMT1P26358 1616 aaKnown RBP11.93□□□□□ -0.5
CCDC39-201ENST00000442201 AKNAQ7Z591 1439 aa11.92□□□□□ -0.5
CCDC39-201ENST00000442201 EFCAB2Q5VUJ9 269 aa11.92□□□□□ -0.5
CCDC39-201ENST00000442201 RRP7BPQ9NSQ0 103 aa11.92□□□□□ -0.5
CCDC39-201ENST00000442201 NAIPQ13075 1403 aa11.91□□□□□ -0.5
CCDC39-201ENST00000442201 ROCK1Q13464 1354 aa11.91□□□□□ -0.5
CCDC39-201ENST00000442201 DHX57Q6P158 1386 aaKnown RBP11.9□□□□□ -0.5
CCDC39-201ENST00000442201 RSPH4AQ5TD94 716 aa11.9□□□□□ -0.5
CCDC39-201ENST00000442201 HNRNPMP52272 730 aaKnown RBP eCLIP11.9□□□□□ -0.5
CCDC39-201ENST00000442201 TSPY4P0CV99 314 aa11.89□□□□□ -0.51
CCDC39-201ENST00000442201 TSPY10P0CW01 314 aa11.89□□□□□ -0.51
CCDC39-201ENST00000442201 MYO5CQ9NQX4 1742 aa11.89□□□□□ -0.51
CCDC39-201ENST00000442201 CDC42BPBQ9Y5S2 1711 aa11.89□□□□□ -0.51
CCDC39-201ENST00000442201 PLEKHH2Q8IVE3 1493 aa11.89□□□□□ -0.51
CCDC39-201ENST00000442201 SAMD9LQ8IVG5 1584 aa11.88□□□□□ -0.51
CCDC39-201ENST00000442201 ARAP3Q8WWN8 1544 aa11.88□□□□□ -0.51
CCDC39-201ENST00000442201 MBD5Q9P267 1494 aa11.88□□□□□ -0.51
CCDC39-201ENST00000442201 KIAA1107Q9UPP5 1409 aa11.88□□□□□ -0.51
CCDC39-201ENST00000442201 CLSPNQ9HAW4 1339 aa11.88□□□□□ -0.51
CCDC39-201ENST00000442201 ERICH6Q7L0X2 663 aa11.87□□□□□ -0.51
CCDC39-201ENST00000442201 ABCA9Q8IUA7 1624 aa11.87□□□□□ -0.51
CCDC39-201ENST00000442201 ANKRD30AQ9BXX3 1397 aa11.87□□□□□ -0.51
CCDC39-201ENST00000442201 ARHGEF5Q12774 1597 aa11.87□□□□□ -0.51
CCDC39-201ENST00000442201 CCDC141Q6ZP82 1450 aa11.86□□□□□ -0.51
CCDC39-201ENST00000442201 SHANK2Q9UPX8 1470 aa11.86□□□□□ -0.51
CCDC39-201ENST00000442201 MAPKBP1O60336 1514 aa11.86□□□□□ -0.51
CCDC39-201ENST00000442201 NCOA1Q15788 1441 aa11.86□□□□□ -0.51
CCDC39-201ENST00000442201 C9orf84Q5VXU9 1444 aa11.86□□□□□ -0.51
CCDC39-201ENST00000442201 ADGRL2O95490 1459 aa11.85□□□□□ -0.51
CCDC39-201ENST00000442201 SYCP2Q9BX26 1530 aa11.85□□□□□ -0.51
CCDC39-201ENST00000442201 ACIN1Q9UKV3 1341 aaKnown RBP11.84□□□□□ -0.51
CCDC39-201ENST00000442201 FANCAO15360 1455 aa11.84□□□□□ -0.51
CCDC39-201ENST00000442201 GCC2Q8IWJ2 1684 aa11.83□□□□□ -0.52
CCDC39-201ENST00000442201 CD109Q6YHK3 1445 aa11.83□□□□□ -0.52
CCDC39-201ENST00000442201 CROCC2H7BZ55 1655 aa11.83□□□□□ -0.52
CCDC39-201ENST00000442201 ABCC1P33527 1531 aa11.82□□□□□ -0.52
CCDC39-201ENST00000442201 AEBP2Q6ZN18 517 aaPredicted RBP11.82□□□□□ -0.52
CCDC39-201ENST00000442201 ARHGEF12Q9NZN5 1544 aa11.82□□□□□ -0.52
CCDC39-201ENST00000442201 TRIM52Q96A61 297 aa11.81□□□□□ -0.52
CCDC39-201ENST00000442201 ADGBQ8N7X0 1667 aa11.8□□□□□ -0.52
CCDC39-201ENST00000442201 KIF15Q9NS87 1388 aa11.8□□□□□ -0.52
CCDC39-201ENST00000442201 ANKRD50Q9ULJ7 1429 aa11.79□□□□□ -0.52
CCDC39-201ENST00000442201 TRAPPC8Q9Y2L5 1435 aa11.79□□□□□ -0.52
CCDC39-201ENST00000442201 ADGRL1O94910 1474 aa11.79□□□□□ -0.52
CCDC39-201ENST00000442201 SCAPERQ9BY12 1400 aa11.78□□□□□ -0.52
CCDC39-201ENST00000442201 MAST1Q9Y2H9 1570 aa11.78□□□□□ -0.52
CCDC39-201ENST00000442201 KDM6BO15054 1643 aa11.78□□□□□ -0.52
CCDC39-201ENST00000442201 AFAP1Q8N556 730 aa11.78□□□□□ -0.52
CCDC39-201ENST00000442201 SPAG9O60271 1321 aaKnown RBP11.77□□□□□ -0.52
CCDC39-201ENST00000442201 FAM69CQ0P6D2 419 aa11.77□□□□□ -0.52
CCDC39-201ENST00000442201 GLI2P10070 1586 aa11.76□□□□□ -0.53
CCDC39-201ENST00000442201 CFAP74Q9C0B2 1584 aa11.75□□□□□ -0.53
CCDC39-201ENST00000442201 RTEL1-TNFRSF6BF6WH68 1400 aa11.75□□□□□ -0.53
CCDC39-201ENST00000442201 NEO1Q92859 1461 aa11.74□□□□□ -0.53
CCDC39-201ENST00000442201 MPHOSPH9Q99550 1183 aa11.74□□□□□ -0.53
CCDC39-201ENST00000442201 DIP2BQ9P265 1576 aa11.73□□□□□ -0.53
CCDC39-201ENST00000442201 PLXNC1O60486 1568 aa11.73□□□□□ -0.53
CCDC39-201ENST00000442201 MYT1LQ9UL68 1186 aa11.73□□□□□ -0.53
CCDC39-201ENST00000442201 MAP3K4Q9Y6R4 1608 aa11.72□□□□□ -0.53
CCDC39-201ENST00000442201 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
CCDC39-201ENST00000442201 ZNF518AQ6AHZ1 1483 aa11.72□□□□□ -0.53
CCDC39-201ENST00000442201 DUOX2Q9NRD8 1548 aa11.71□□□□□ -0.53
CCDC39-201ENST00000442201 CENPBP07199 599 aaPredicted RBP11.71□□□□□ -0.53
CCDC39-201ENST00000442201 ZFYVE16Q7Z3T8 1539 aa11.7□□□□□ -0.54
CCDC39-201ENST00000442201 POGZQ7Z3K3 1410 aa11.7□□□□□ -0.54
CCDC39-201ENST00000442201 NUP155O75694 1391 aa11.7□□□□□ -0.54
CCDC39-201ENST00000442201 SIN3AQ96ST3 1273 aa11.7□□□□□ -0.54
CCDC39-201ENST00000442201 NEUROD1Q13562 356 aa11.7□□□□□ -0.54
CCDC39-201ENST00000442201 ATP7AQ04656 1500 aa11.69□□□□□ -0.54
CCDC39-201ENST00000442201 DENND4BO75064 1496 aaPredicted RBP11.69□□□□□ -0.54
CCDC39-201ENST00000442201 ERBINQ96RT1 1412 aa11.69□□□□□ -0.54
CCDC39-201ENST00000442201 PZPP20742 1482 aa11.68□□□□□ -0.54
CCDC39-201ENST00000442201 INO80Q9ULG1 1556 aaPredicted RBP11.68□□□□□ -0.54
CCDC39-201ENST00000442201 TIMELESSQ9UNS1 1208 aa11.68□□□□□ -0.54
CCDC39-201ENST00000442201 TEX14Q8IWB6 1497 aa11.67□□□□□ -0.54
CCDC39-201ENST00000442201 RAPGEF3O95398 923 aa11.67□□□□□ -0.54
CCDC39-201ENST00000442201 KDM5CP41229 1560 aa11.66□□□□□ -0.54
CCDC39-201ENST00000442201 MLH3Q9UHC1 1453 aa11.66□□□□□ -0.54
CCDC39-201ENST00000442201 FOXD1Q16676 465 aa11.66□□□□□ -0.54
CCDC39-201ENST00000442201 DNAJC5Q9H3Z4 198 aa11.66□□□□□ -0.54
CCDC39-201ENST00000442201 KDM5DQ9BY66 1539 aa11.66□□□□□ -0.54
CCDC39-201ENST00000442201 PKD2Q13563 968 aa11.66□□□□□ -0.54
CCDC39-201ENST00000442201 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.65□□□□□ -0.54
CCDC39-201ENST00000442201 DHX29Q7Z478 1369 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms