RNA–Protein interactions for RNA: ENST00000440835.6

PTPRR-204, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRR, Length 2,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-204ENST00000440835 C9orf84Q5VXU9 1444 aa9.88□□□□□ -0.83
PTPRR-204ENST00000440835 ARID4BQ4LE39 1312 aaPredicted RBP9.88□□□□□ -0.83
PTPRR-204ENST00000440835 ARID3CA6NKF2 412 aa9.88□□□□□ -0.83
PTPRR-204ENST00000440835 EFCAB2Q5VUJ9 269 aa9.88□□□□□ -0.83
PTPRR-204ENST00000440835 ZNF518AQ6AHZ1 1483 aa9.88□□□□□ -0.83
PTPRR-204ENST00000440835 KDM5CP41229 1560 aa9.88□□□□□ -0.83
PTPRR-204ENST00000440835 ARHGEF12Q9NZN5 1544 aa9.87□□□□□ -0.83
PTPRR-204ENST00000440835 CCDC18Q5T9S5 1454 aa9.87□□□□□ -0.83
PTPRR-204ENST00000440835 TROQ12816 1431 aaPredicted RBP9.87□□□□□ -0.83
PTPRR-204ENST00000440835 CDK13Q14004 1512 aaKnown RBP9.87□□□□□ -0.83
PTPRR-204ENST00000440835 ARHGAP35Q9NRY4 1499 aa9.87□□□□□ -0.83
PTPRR-204ENST00000440835 SCAPERQ9BY12 1400 aa9.87□□□□□ -0.83
PTPRR-204ENST00000440835 PREX1Q8TCU6 1659 aa9.86□□□□□ -0.83
PTPRR-204ENST00000440835 PREX2Q70Z35 1606 aa9.84□□□□□ -0.83
PTPRR-204ENST00000440835 AGLP35573 1532 aa9.84□□□□□ -0.83
PTPRR-204ENST00000440835 MLH3Q9UHC1 1453 aa9.84□□□□□ -0.83
PTPRR-204ENST00000440835 YEATS2Q9ULM3 1422 aa9.83□□□□□ -0.84
PTPRR-204ENST00000440835 CASKIN1Q8WXD9 1431 aa9.83□□□□□ -0.84
PTPRR-204ENST00000440835 SETD1BQ9UPS6 1966 aaKnown RBP9.83□□□□□ -0.84
PTPRR-204ENST00000440835 ARHGAP5Q13017 1502 aa9.82□□□□□ -0.84
PTPRR-204ENST00000440835 SLC24A1O60721 1099 aa9.82□□□□□ -0.84
PTPRR-204ENST00000440835 SIGLEC1Q9BZZ2 1709 aa9.82□□□□□ -0.84
PTPRR-204ENST00000440835 UBTFP17480 764 aaKnown RBP9.82□□□□□ -0.84
PTPRR-204ENST00000440835 CDC42BPBQ9Y5S2 1711 aa9.81□□□□□ -0.84
PTPRR-204ENST00000440835 ITSN2Q9NZM3 1697 aa9.81□□□□□ -0.84
PTPRR-204ENST00000440835 LRRIQ1Q96JM4 1722 aa9.81□□□□□ -0.84
PTPRR-204ENST00000440835 FYCO1Q9BQS8 1478 aa9.8□□□□□ -0.84
PTPRR-204ENST00000440835 DIP2CQ9Y2E4 1556 aa9.8□□□□□ -0.84
PTPRR-204ENST00000440835 ABCC1P33527 1531 aa9.8□□□□□ -0.84
PTPRR-204ENST00000440835 DMRT2Q9Y5R5 561 aa9.8□□□□□ -0.84
PTPRR-204ENST00000440835 CNTLNQ9NXG0 1405 aa9.8□□□□□ -0.84
PTPRR-204ENST00000440835 MROH2AA6NES4 1674 aa9.79□□□□□ -0.84
PTPRR-204ENST00000440835 PLEKHH2Q8IVE3 1493 aa9.78□□□□□ -0.84
PTPRR-204ENST00000440835 RANGAP1P46060 587 aaPredicted RBP9.78□□□□□ -0.84
PTPRR-204ENST00000440835 CDC42BPAQ5VT25 1732 aa9.77□□□□□ -0.85
PTPRR-204ENST00000440835 ABCA6Q8N139 1617 aa9.77□□□□□ -0.85
PTPRR-204ENST00000440835 UHRF1BP1Q6BDS2 1440 aa9.76□□□□□ -0.85
PTPRR-204ENST00000440835 IQSEC2Q5JU85 1478 aa9.75□□□□□ -0.85
PTPRR-204ENST00000440835 PTPRTO14522 1441 aa9.75□□□□□ -0.85
PTPRR-204ENST00000440835 KIAA1107Q9UPP5 1409 aa9.75□□□□□ -0.85
PTPRR-204ENST00000440835 KIDINS220Q9ULH0 1771 aa9.75□□□□□ -0.85
PTPRR-204ENST00000440835 NPATQ14207 1427 aa9.74□□□□□ -0.85
PTPRR-204ENST00000440835 C3P01024 1663 aa9.74□□□□□ -0.85
PTPRR-204ENST00000440835 FAM135AQ9P2D6 1515 aa9.73□□□□□ -0.85
PTPRR-204ENST00000440835 ATP1B4Q9UN42 357 aaPredicted RBP9.73□□□□□ -0.85
PTPRR-204ENST00000440835 TRAPPC8Q9Y2L5 1435 aa9.73□□□□□ -0.85
PTPRR-204ENST00000440835 MYT1Q01538 1121 aa9.73□□□□□ -0.85
PTPRR-204ENST00000440835 PPP6R1Q9UPN7 881 aa9.73□□□□□ -0.85
PTPRR-204ENST00000440835 SAMD9LQ8IVG5 1584 aa9.73□□□□□ -0.85
PTPRR-204ENST00000440835 STRCQ7RTU9 1775 aa9.73□□□□□ -0.85
PTPRR-204ENST00000440835 CERKQ8TCT0 537 aa9.72□□□□□ -0.85
PTPRR-204ENST00000440835 ADGBQ8N7X0 1667 aa9.71□□□□□ -0.86
PTPRR-204ENST00000440835 ESF1Q9H501 851 aaKnown RBP9.71□□□□□ -0.86
PTPRR-204ENST00000440835 INO80Q9ULG1 1556 aaPredicted RBP9.71□□□□□ -0.86
PTPRR-204ENST00000440835 AFAP1Q8N556 730 aa9.7□□□□□ -0.86
PTPRR-204ENST00000440835 PLXNC1O60486 1568 aa9.7□□□□□ -0.86
PTPRR-204ENST00000440835 MLECQ14165 292 aa9.7□□□□□ -0.86
PTPRR-204ENST00000440835 GPATCH8Q9UKJ3 1502 aaKnown RBP9.7□□□□□ -0.86
PTPRR-204ENST00000440835 ZNF142P52746 1687 aaPredicted RBP9.69□□□□□ -0.86
PTPRR-204ENST00000440835 ATP7AQ04656 1500 aa9.69□□□□□ -0.86
PTPRR-204ENST00000440835 HSPA2P54652 639 aa9.69□□□□□ -0.86
PTPRR-204ENST00000440835 RTEL1-TNFRSF6BF6WH68 1400 aa9.68□□□□□ -0.86
PTPRR-204ENST00000440835 EHBP1L1Q8N3D4 1523 aa9.68□□□□□ -0.86
PTPRR-204ENST00000440835 MYT1LQ9UL68 1186 aa9.68□□□□□ -0.86
PTPRR-204ENST00000440835 SYCP2Q9BX26 1530 aa9.67□□□□□ -0.86
PTPRR-204ENST00000440835 NCOA1Q15788 1441 aa9.67□□□□□ -0.86
PTPRR-204ENST00000440835 PLA2R1Q13018 1463 aa9.67□□□□□ -0.86
PTPRR-204ENST00000440835 CCNB3Q8WWL7 1395 aa9.66□□□□□ -0.86
PTPRR-204ENST00000440835 SPAG9O60271 1321 aaKnown RBP9.66□□□□□ -0.86
PTPRR-204ENST00000440835 A2MP01023 1474 aa9.66□□□□□ -0.86
PTPRR-204ENST00000440835 CEP162Q5TB80 1403 aa9.65□□□□□ -0.87
PTPRR-204ENST00000440835 RSPH4AQ5TD94 716 aa9.64□□□□□ -0.87
PTPRR-204ENST00000440835 SUPT6HQ7KZ85 1726 aaKnown RBP9.64□□□□□ -0.87
PTPRR-204ENST00000440835 CFDP1Q9UEE9 299 aaPredicted RBP9.64□□□□□ -0.87
PTPRR-204ENST00000440835 MTUS2Q5JR59 1369 aa9.63□□□□□ -0.87
PTPRR-204ENST00000440835 CLTCQ00610 1675 aaKnown RBP9.63□□□□□ -0.87
PTPRR-204ENST00000440835 LTBP4Q8N2S1 1624 aa9.63□□□□□ -0.87
PTPRR-204ENST00000440835 MYO3AQ8NEV4 1616 aa9.63□□□□□ -0.87
PTPRR-204ENST00000440835 PKD2Q13563 968 aa9.63□□□□□ -0.87
PTPRR-204ENST00000440835 TIAM1Q13009 1591 aa9.63□□□□□ -0.87
PTPRR-204ENST00000440835 ZMYM3Q14202 1370 aa9.63□□□□□ -0.87
PTPRR-204ENST00000440835 CEBPAP49715 358 aaPredicted RBP9.63□□□□□ -0.87
PTPRR-204ENST00000440835 CAMSAP1Q5T5Y3 1602 aa9.62□□□□□ -0.87
PTPRR-204ENST00000440835 CEP170BQ9Y4F5 1589 aaPredicted RBP9.61□□□□□ -0.87
PTPRR-204ENST00000440835 PTPRKQ15262 1439 aa9.61□□□□□ -0.87
PTPRR-204ENST00000440835 ARHGEF5Q12774 1597 aa9.61□□□□□ -0.87
PTPRR-204ENST00000440835 PLPPR3Q6T4P5 718 aa9.61□□□□□ -0.87
PTPRR-204ENST00000440835 MBD5Q9P267 1494 aa9.61□□□□□ -0.87
PTPRR-204ENST00000440835 TCOF1Q13428 1488 aaKnown RBP9.6□□□□□ -0.87
PTPRR-204ENST00000440835 DHX29Q7Z478 1369 aaKnown RBP9.6□□□□□ -0.87
PTPRR-204ENST00000440835 A2ML1A8K2U0 1454 aa9.59□□□□□ -0.87
PTPRR-204ENST00000440835 CCDC141Q6ZP82 1450 aa9.59□□□□□ -0.87
PTPRR-204ENST00000440835 MAP3K1Q13233 1512 aa9.58□□□□□ -0.88
PTPRR-204ENST00000440835 HNRNPMP52272 730 aaKnown RBP eCLIP9.58□□□□□ -0.88
PTPRR-204ENST00000440835 PELP1Q8IZL8 1130 aaKnown RBP9.58□□□□□ -0.88
PTPRR-204ENST00000440835 ZNF777Q9ULD5 760 aaPredicted RBP9.58□□□□□ -0.88
PTPRR-204ENST00000440835 KDM5DQ9BY66 1539 aa9.58□□□□□ -0.88
PTPRR-204ENST00000440835 ZC3H13Q5T200 1668 aaKnown RBP9.58□□□□□ -0.88
PTPRR-204ENST00000440835 MAST1Q9Y2H9 1570 aa9.58□□□□□ -0.88
PTPRR-204ENST00000440835 POLR1AO95602 1720 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms