RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 KANK4Q5T7N3 995 aaPredicted RBP22■■□□□ 1.11
PTPRF-209ENST00000438120 PAK3O75914 559 aaPredicted RBP22■■□□□ 1.11
PTPRF-209ENST00000438120 HDGFP51858 240 aaKnown RBP21.98■■□□□ 1.11
PTPRF-209ENST00000438120 NAP1L5Q96NT1 182 aaPredicted RBP21.98■■□□□ 1.11
PTPRF-209ENST00000438120 RTF1Q92541 710 aaKnown RBP21.98■■□□□ 1.11
PTPRF-209ENST00000438120 HSCBQ8IWL3 235 aa21.95■■□□□ 1.11
PTPRF-209ENST00000438120 ZNF330Q9Y3S2 320 aaPredicted RBP21.95■■□□□ 1.1
PTPRF-209ENST00000438120 SETD5Q9C0A6 1442 aa21.94■■□□□ 1.1
PTPRF-209ENST00000438120 GOLGA6L4A6NEF3 574 aa21.93■■□□□ 1.1
PTPRF-209ENST00000438120 BAZ1AQ9NRL2 1556 aaPredicted RBP21.92■■□□□ 1.1
PTPRF-209ENST00000438120 HDGFL2Q7Z4V5 671 aaPredicted RBP21.92■■□□□ 1.1
PTPRF-209ENST00000438120 ISY1Q9ULR0 285 aaKnown RBP21.92■■□□□ 1.1
PTPRF-209ENST00000438120 U2AF1L5P0DN76 240 aaPredicted RBP21.91■■□□□ 1.1
PTPRF-209ENST00000438120 U2AF1Q01081 240 aaKnown RBP eCLIP21.91■■□□□ 1.1
PTPRF-209ENST00000438120 ARHGAP35Q9NRY4 1499 aa21.91■■□□□ 1.1
PTPRF-209ENST00000438120 ERICH6BQ5W0A0 696 aa21.91■■□□□ 1.1
PTPRF-209ENST00000438120 NUTM2DQ5VT03 806 aaPredicted RBP21.9■■□□□ 1.1
PTPRF-209ENST00000438120 KTN1Q86UP2 1357 aaKnown RBP21.9■■□□□ 1.1
PTPRF-209ENST00000438120 ROCK2O75116 1388 aaKnown RBP21.88■■□□□ 1.09
PTPRF-209ENST00000438120 CSB-PGBD3P0DP91 1061 aa21.87■■□□□ 1.09
PTPRF-209ENST00000438120 MPHOSPH9Q99550 1183 aa21.86■■□□□ 1.09
PTPRF-209ENST00000438120 MCCP23508 829 aa21.85■■□□□ 1.09
PTPRF-209ENST00000438120 NUP155O75694 1391 aa21.85■■□□□ 1.09
PTPRF-209ENST00000438120 GOLGA6L6A8MZA4 724 aa21.85■■□□□ 1.09
PTPRF-209ENST00000438120 ITPRIPQ8IWB1 547 aa21.85■■□□□ 1.09
PTPRF-209ENST00000438120 CCER2I3L3R5 266 aa21.84■■□□□ 1.09
PTPRF-209ENST00000438120 ABCC8Q09428 1581 aa21.84■■□□□ 1.09
PTPRF-209ENST00000438120 CLSTN1O94985 981 aa21.84■■□□□ 1.09
PTPRF-209ENST00000438120 TDRD9Q8NDG6 1382 aaKnown RBP21.83■■□□□ 1.09
PTPRF-209ENST00000438120 TIMELESSQ9UNS1 1208 aa21.82■■□□□ 1.08
PTPRF-209ENST00000438120 NCBP3Q53F19 620 aaKnown RBP21.8■■□□□ 1.08
PTPRF-209ENST00000438120 RCAN3Q9UKA8 241 aa21.79■■□□□ 1.08
PTPRF-209ENST00000438120 IPO8O15397 1037 aaKnown RBP21.79■■□□□ 1.08
PTPRF-209ENST00000438120 RAB3GAP2Q9H2M9 1393 aa21.79■■□□□ 1.08
PTPRF-209ENST00000438120 VPS8Q8N3P4 1428 aa21.79■■□□□ 1.08
PTPRF-209ENST00000438120 HNRNPMP52272 730 aaKnown RBP eCLIP21.79■■□□□ 1.081e-6■■■■□ 19.7
PTPRF-209ENST00000438120 KIF3BO15066 747 aa21.78■■□□□ 1.08
PTPRF-209ENST00000438120 CCDC146Q8IYE0 955 aa21.77■■□□□ 1.08
PTPRF-209ENST00000438120 GNL2Q13823 731 aaKnown RBP21.77■■□□□ 1.08
PTPRF-209ENST00000438120 DRC7Q8IY82 874 aa21.77■■□□□ 1.08
PTPRF-209ENST00000438120 CARMIL2Q6F5E8 1435 aa21.77■■□□□ 1.07
PTPRF-209ENST00000438120 NUTM2FA1L443 756 aa21.76■■□□□ 1.07
PTPRF-209ENST00000438120 KIAA1211Q6ZU35 1233 aa21.76■■□□□ 1.07
PTPRF-209ENST00000438120 RBM19Q9Y4C8 960 aaKnown RBP21.75■■□□□ 1.07
PTPRF-209ENST00000438120 EFCAB2Q5VUJ9 269 aa21.75■■□□□ 1.07
PTPRF-209ENST00000438120 NRDCO43847 1150 aa21.74■■□□□ 1.07
PTPRF-209ENST00000438120 CCDC88BA6NC98 1476 aa21.74■■□□□ 1.07
PTPRF-209ENST00000438120 SLKQ9H2G2 1235 aaPredicted RBP21.73■■□□□ 1.07
PTPRF-209ENST00000438120 CHMP3Q9Y3E7 222 aa21.73■■□□□ 1.07
PTPRF-209ENST00000438120 CLUAP1Q96AJ1 413 aa21.72■■□□□ 1.07
PTPRF-209ENST00000438120 CCDC9Q9Y3X0 531 aaKnown RBP21.72■■□□□ 1.07
PTPRF-209ENST00000438120 GZF1Q9H116 711 aaPredicted RBP21.72■■□□□ 1.07
PTPRF-209ENST00000438120 RALBP1Q15311 655 aa21.7■■□□□ 1.06
PTPRF-209ENST00000438120 ANKRD30AQ9BXX3 1397 aa21.7■■□□□ 1.06
PTPRF-209ENST00000438120 RWDD1Q9H446 243 aaPredicted RBP21.7■■□□□ 1.06
PTPRF-209ENST00000438120 SMC4Q9NTJ3 1288 aa21.69■■□□□ 1.06
PTPRF-209ENST00000438120 AMER1Q5JTC6 1135 aaPredicted RBP21.69■■□□□ 1.06
PTPRF-209ENST00000438120 LTV1Q96GA3 475 aaPredicted RBP21.69■■□□□ 1.06
PTPRF-209ENST00000438120 SLC4A10Q6U841 1118 aa21.69■■□□□ 1.06
PTPRF-209ENST00000438120 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.68■■□□□ 1.061e-6■□□□□ 9.3
PTPRF-209ENST00000438120 L3MBTL2Q969R5 705 aa21.68■■□□□ 1.06
PTPRF-209ENST00000438120 MSNP26038 577 aaKnown RBP21.68■■□□□ 1.06
PTPRF-209ENST00000438120 CALD1Q05682 793 aaKnown RBP21.68■■□□□ 1.06
PTPRF-209ENST00000438120 MFAP1P55081 439 aaKnown RBP21.67■■□□□ 1.06
PTPRF-209ENST00000438120 DEKP35659 375 aaKnown RBP21.67■■□□□ 1.06
PTPRF-209ENST00000438120 STK31Q9BXU1 1019 aa21.67■■□□□ 1.06
PTPRF-209ENST00000438120 MROH2BQ7Z745 1585 aa21.65■■□□□ 1.06
PTPRF-209ENST00000438120 CHAF1AQ13111 956 aaPredicted RBP21.65■■□□□ 1.06
PTPRF-209ENST00000438120 GORABQ5T7V8 394 aa21.65■■□□□ 1.06
PTPRF-209ENST00000438120 NGDNQ8NEJ9 315 aaKnown RBP21.65■■□□□ 1.06
PTPRF-209ENST00000438120 TRIM6-TRIM34B2RNG4 842 aa21.64■■□□□ 1.06
PTPRF-209ENST00000438120 SPAG9O60271 1321 aaKnown RBP21.64■■□□□ 1.05
PTPRF-209ENST00000438120 WASHC2CQ9Y4E1 1318 aa21.64■■□□□ 1.05
PTPRF-209ENST00000438120 NOL8Q76FK4 1167 aaKnown RBP21.63■■□□□ 1.05
PTPRF-209ENST00000438120 TRAK1Q9UPV9 953 aa21.62■■□□□ 1.05
PTPRF-209ENST00000438120 FMN1Q68DA7 1419 aa21.62■■□□□ 1.05
PTPRF-209ENST00000438120 L1TD1Q5T7N2 865 aaKnown RBP21.62■■□□□ 1.05
PTPRF-209ENST00000438120 CFAP44Q96MT7 982 aa21.62■■□□□ 1.05
PTPRF-209ENST00000438120 TERF2IPQ9NYB0 399 aa21.62■■□□□ 1.05
PTPRF-209ENST00000438120 FOXD4L1Q9NU39 408 aa21.61■■□□□ 1.05
PTPRF-209ENST00000438120 EIF3AQ14152 1382 aaKnown RBP21.61■■□□□ 1.05
PTPRF-209ENST00000438120 RRP7AQ9Y3A4 280 aaKnown RBP21.61■■□□□ 1.05
PTPRF-209ENST00000438120 FHOD3Q2V2M9 1422 aa21.61■■□□□ 1.05
PTPRF-209ENST00000438120 PDS5BQ9NTI5 1447 aa21.6■■□□□ 1.05
PTPRF-209ENST00000438120 TAF7LQ5H9L4 462 aa21.6■■□□□ 1.05
PTPRF-209ENST00000438120 AMPHP49418 695 aa21.59■■□□□ 1.05
PTPRF-209ENST00000438120 EID1Q9Y6B2 187 aa21.57■■□□□ 1.04
PTPRF-209ENST00000438120 GBP4Q96PP9 640 aa21.57■■□□□ 1.04
PTPRF-209ENST00000438120 HSP90B1P14625 803 aaKnown RBP21.56■■□□□ 1.04
PTPRF-209ENST00000438120 PMFBP1Q8TBY8 1022 aa21.56■■□□□ 1.04
PTPRF-209ENST00000438120 ARID3AQ99856 593 aa21.54■■□□□ 1.04
PTPRF-209ENST00000438120 TCERG1O14776 1098 aaKnown RBP21.54■■□□□ 1.04
PTPRF-209ENST00000438120 ELL2O00472 640 aaPredicted RBP21.53■■□□□ 1.04
PTPRF-209ENST00000438120 CENPJQ9HC77 1338 aaPredicted RBP21.53■■□□□ 1.04
PTPRF-209ENST00000438120 TMX4Q9H1E5 349 aaPredicted RBP21.51■■□□□ 1.03
PTPRF-209ENST00000438120 GPATCH3Q96I76 525 aa21.51■■□□□ 1.03
PTPRF-209ENST00000438120 BCL2L13Q9BXK5 485 aa21.51■■□□□ 1.03
PTPRF-209ENST00000438120 NLRP13Q86W25 1043 aa21.5■■□□□ 1.03
PTPRF-209ENST00000438120 HMMRO75330 724 aa21.5■■□□□ 1.03
PTPRF-209ENST00000438120 ST20-MTHFSA0A0A6YYL1 179 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms