RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 RIMBP3Q9UFD9 1639 aa13.68□□□□□ -0.22
CUX1-206ENST00000437600 ZNF777Q9ULD5 760 aaPredicted RBP13.68□□□□□ -0.22
CUX1-206ENST00000437600 ZCCHC11Q5TAX3 1644 aaKnown RBP13.67□□□□□ -0.22
CUX1-206ENST00000437600 CLSPNQ9HAW4 1339 aa13.67□□□□□ -0.22
CUX1-206ENST00000437600 TROQ12816 1431 aaPredicted RBP13.66□□□□□ -0.22
CUX1-206ENST00000437600 DDX10Q13206 875 aaKnown RBP13.65□□□□□ -0.22
CUX1-206ENST00000437600 PTPN23Q9H3S7 1636 aa13.62□□□□□ -0.23
CUX1-206ENST00000437600 KDM5BQ9UGL1 1544 aa13.6□□□□□ -0.23
CUX1-206ENST00000437600 MAPKBP1O60336 1514 aa13.6□□□□□ -0.23
CUX1-206ENST00000437600 TRIM52Q96A61 297 aa13.59□□□□□ -0.23
CUX1-206ENST00000437600 CFDP1Q9UEE9 299 aaPredicted RBP13.59□□□□□ -0.23
CUX1-206ENST00000437600 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.59□□□□□ -0.232e-6■■□□□ 13.4
CUX1-206ENST00000437600 UHRF1BP1LA0JNW5 1464 aa13.58□□□□□ -0.24
CUX1-206ENST00000437600 NPM1P06748 294 aaKnown RBP eCLIP13.58□□□□□ -0.24
CUX1-206ENST00000437600 TTC37Q6PGP7 1564 aa13.58□□□□□ -0.24
CUX1-206ENST00000437600 CDC42BPAQ5VT25 1732 aa13.57□□□□□ -0.24
CUX1-206ENST00000437600 FOXD1Q16676 465 aa13.57□□□□□ -0.24
CUX1-206ENST00000437600 NAIPQ13075 1403 aa13.57□□□□□ -0.24
CUX1-206ENST00000437600 GPATCH8Q9UKJ3 1502 aaKnown RBP13.57□□□□□ -0.24
CUX1-206ENST00000437600 ASXL2Q76L83 1435 aa13.56□□□□□ -0.24
CUX1-206ENST00000437600 HFM1A2PYH4 1435 aa13.55□□□□□ -0.24
CUX1-206ENST00000437600 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.55□□□□□ -0.247e-8■■■■■ 32
CUX1-206ENST00000437600 ABCC10Q5T3U5 1492 aa13.55□□□□□ -0.24
CUX1-206ENST00000437600 PPP1R15AO75807 674 aaPredicted RBP13.53□□□□□ -0.24
CUX1-206ENST00000437600 CDC42BPBQ9Y5S2 1711 aa13.52□□□□□ -0.24
CUX1-206ENST00000437600 HNRNPMP52272 730 aaKnown RBP eCLIP13.52□□□□□ -0.249e-7■■■□□ 19.2
CUX1-206ENST00000437600 WDR7Q9Y4E6 1490 aa13.52□□□□□ -0.25
CUX1-206ENST00000437600 MIA2Q96PC5 1412 aa13.51□□□□□ -0.25
CUX1-206ENST00000437600 CAMSAP2Q08AD1 1489 aa13.5□□□□□ -0.25
CUX1-206ENST00000437600 TCOF1Q13428 1488 aaKnown RBP13.5□□□□□ -0.25
CUX1-206ENST00000437600 KDM6BO15054 1643 aa13.5□□□□□ -0.25
CUX1-206ENST00000437600 ITSN2Q9NZM3 1697 aa13.49□□□□□ -0.25
CUX1-206ENST00000437600 ARHGAP5Q13017 1502 aa13.49□□□□□ -0.25
CUX1-206ENST00000437600 ABCC5O15440 1437 aa13.49□□□□□ -0.25
CUX1-206ENST00000437600 DAPK1P53355 1430 aa13.48□□□□□ -0.25
CUX1-206ENST00000437600 MYO5CQ9NQX4 1742 aa13.47□□□□□ -0.25
CUX1-206ENST00000437600 PREX2Q70Z35 1606 aa13.46□□□□□ -0.25
CUX1-206ENST00000437600 TONSLQ96HA7 1378 aa13.46□□□□□ -0.25
CUX1-206ENST00000437600 SAMD9LQ8IVG5 1584 aa13.45□□□□□ -0.26
CUX1-206ENST00000437600 MPHOSPH9Q99550 1183 aa13.44□□□□□ -0.26
CUX1-206ENST00000437600 TSPOAP1O95153 1857 aa13.43□□□□□ -0.26
CUX1-206ENST00000437600 SYCP2Q9BX26 1530 aa13.43□□□□□ -0.26
CUX1-206ENST00000437600 CNGB1Q14028 1251 aaPredicted RBP13.42□□□□□ -0.26
CUX1-206ENST00000437600 FAM69CQ0P6D2 419 aa13.42□□□□□ -0.26
CUX1-206ENST00000437600 SLC4A1APQ9BWU0 796 aaKnown RBP13.41□□□□□ -0.26
CUX1-206ENST00000437600 DNMT1P26358 1616 aaKnown RBP13.41□□□□□ -0.26
CUX1-206ENST00000437600 PLCH2O75038 1416 aa13.41□□□□□ -0.26
CUX1-206ENST00000437600 ARHGEF12Q9NZN5 1544 aa13.41□□□□□ -0.26
CUX1-206ENST00000437600 AFAP1Q8N556 730 aa13.4□□□□□ -0.26
CUX1-206ENST00000437600 EFCAB2Q5VUJ9 269 aa13.39□□□□□ -0.27
CUX1-206ENST00000437600 ABCA9Q8IUA7 1624 aa13.39□□□□□ -0.27
CUX1-206ENST00000437600 DENND4BO75064 1496 aaPredicted RBP13.39□□□□□ -0.27
CUX1-206ENST00000437600 CD109Q6YHK3 1445 aa13.39□□□□□ -0.27
CUX1-206ENST00000437600 FANCAO15360 1455 aa13.39□□□□□ -0.27
CUX1-206ENST00000437600 TSPY4P0CV99 314 aa13.38□□□□□ -0.27
CUX1-206ENST00000437600 TSPY10P0CW01 314 aa13.38□□□□□ -0.27
CUX1-206ENST00000437600 BCANQ96GW7 911 aa13.38□□□□□ -0.27
CUX1-206ENST00000437600 MYT1LQ9UL68 1186 aa13.38□□□□□ -0.27
CUX1-206ENST00000437600 AKNAQ7Z591 1439 aa13.38□□□□□ -0.27
CUX1-206ENST00000437600 MBD5Q9P267 1494 aa13.37□□□□□ -0.27
CUX1-206ENST00000437600 ERICH6Q7L0X2 663 aa13.37□□□□□ -0.27
CUX1-206ENST00000437600 SLC24A1O60721 1099 aa13.37□□□□□ -0.27
CUX1-206ENST00000437600 NCOA1Q15788 1441 aa13.37□□□□□ -0.27
CUX1-206ENST00000437600 TRAPPC8Q9Y2L5 1435 aa13.37□□□□□ -0.27
CUX1-206ENST00000437600 BCL11AQ9H165 835 aa13.36□□□□□ -0.27
CUX1-206ENST00000437600 L3MBTL2Q969R5 705 aa13.36□□□□□ -0.27
CUX1-206ENST00000437600 GCC2Q8IWJ2 1684 aa13.36□□□□□ -0.27
CUX1-206ENST00000437600 CROCC2H7BZ55 1655 aa13.35□□□□□ -0.27
CUX1-206ENST00000437600 DNAJC5Q9H3Z4 198 aa13.35□□□□□ -0.27
CUX1-206ENST00000437600 ROCK1Q13464 1354 aa13.35□□□□□ -0.27
CUX1-206ENST00000437600 C9orf84Q5VXU9 1444 aa13.35□□□□□ -0.27
CUX1-206ENST00000437600 TIMELESSQ9UNS1 1208 aa13.34□□□□□ -0.27
CUX1-206ENST00000437600 ANP32CO43423 234 aa13.34□□□□□ -0.27
CUX1-206ENST00000437600 RAPGEF3O95398 923 aa13.34□□□□□ -0.27
CUX1-206ENST00000437600 ZNF326Q5BKZ1 582 aaKnown RBP13.34□□□□□ -0.27
CUX1-206ENST00000437600 SUPT16HQ9Y5B9 1047 aaKnown RBP13.33□□□□□ -0.28
CUX1-206ENST00000437600 ANKRD30AQ9BXX3 1397 aa13.33□□□□□ -0.28
CUX1-206ENST00000437600 ADGRL1O94910 1474 aa13.33□□□□□ -0.28
CUX1-206ENST00000437600 SCAPERQ9BY12 1400 aa13.33□□□□□ -0.28
CUX1-206ENST00000437600 DIP2BQ9P265 1576 aa13.33□□□□□ -0.28
CUX1-206ENST00000437600 ABCC1P33527 1531 aa13.32□□□□□ -0.28
CUX1-206ENST00000437600 CCDC141Q6ZP82 1450 aa13.32□□□□□ -0.28
CUX1-206ENST00000437600 HSPA5P11021 654 aaKnown RBP13.32□□□□□ -0.28
CUX1-206ENST00000437600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.31□□□□□ -0.281e-6■■□□□ 13.7
CUX1-206ENST00000437600 ANKRD50Q9ULJ7 1429 aa13.31□□□□□ -0.28
CUX1-206ENST00000437600 TRHP20396 242 aaPredicted RBP13.31□□□□□ -0.28
CUX1-206ENST00000437600 PKD2Q13563 968 aa13.31□□□□□ -0.28
CUX1-206ENST00000437600 KIF13AQ9H1H9 1805 aa13.31□□□□□ -0.28
CUX1-206ENST00000437600 C11orf95C9JLR9 678 aaPredicted RBP13.3□□□□□ -0.28
CUX1-206ENST00000437600 POLR3GLQ9BT43 218 aa13.3□□□□□ -0.28
CUX1-206ENST00000437600 ADGBQ8N7X0 1667 aa13.3□□□□□ -0.28
CUX1-206ENST00000437600 NUP155O75694 1391 aa13.29□□□□□ -0.28
CUX1-206ENST00000437600 KIF15Q9NS87 1388 aa13.29□□□□□ -0.28
CUX1-206ENST00000437600 NBPF8Q3BBV2 869 aa13.29□□□□□ -0.28
CUX1-206ENST00000437600 MAP3K4Q9Y6R4 1608 aa13.28□□□□□ -0.28
CUX1-206ENST00000437600 ARHGEF5Q12774 1597 aa13.28□□□□□ -0.28
CUX1-206ENST00000437600 SENP3-EIF4A1A0A087X0R7 540 aa13.28□□□□□ -0.28
CUX1-206ENST00000437600 SPAG9O60271 1321 aaKnown RBP13.27□□□□□ -0.28
CUX1-206ENST00000437600 KIAA1107Q9UPP5 1409 aa13.27□□□□□ -0.29
CUX1-206ENST00000437600 ANKRD30BQ9BXX2 1392 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms