RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RALBP1Q15311 655 aa9.03□□□□□ -0.96
VPS53-204ENST00000437048 IL27Q8NEV9 243 aa9.02□□□□□ -0.96
VPS53-204ENST00000437048 PMFBP1Q8TBY8 1022 aa9.02□□□□□ -0.97
VPS53-204ENST00000437048 ACBD3Q9H3P7 528 aa9.02□□□□□ -0.97
VPS53-204ENST00000437048 NACADO15069 1562 aa9.02□□□□□ -0.97
VPS53-204ENST00000437048 CDR1P51861 262 aa9.02□□□□□ -0.97
VPS53-204ENST00000437048 TSPYL1Q9H0U9 437 aa9.02□□□□□ -0.97
VPS53-204ENST00000437048 EIF3AQ14152 1382 aaKnown RBP9.02□□□□□ -0.97
VPS53-204ENST00000437048 RWDD1Q9H446 243 aaPredicted RBP9.01□□□□□ -0.97
VPS53-204ENST00000437048 PDIA4P13667 645 aaKnown RBP9.01□□□□□ -0.97
VPS53-204ENST00000437048 RBM19Q9Y4C8 960 aaKnown RBP9.01□□□□□ -0.97
VPS53-204ENST00000437048 HMGN5P82970 282 aaKnown RBP9.01□□□□□ -0.97
VPS53-204ENST00000437048 HMMRO75330 724 aa9.01□□□□□ -0.97
VPS53-204ENST00000437048 PLEKHG5O94827 1062 aa9.01□□□□□ -0.97
VPS53-204ENST00000437048 WWC1Q8IX03 1113 aa9□□□□□ -0.97
VPS53-204ENST00000437048 KIF27Q86VH2 1401 aa9□□□□□ -0.97
VPS53-204ENST00000437048 KIF16BQ96L93 1317 aa9□□□□□ -0.97
VPS53-204ENST00000437048 KTN1Q86UP2 1357 aaKnown RBP9□□□□□ -0.97
VPS53-204ENST00000437048 CCNB3Q8WWL7 1395 aa8.99□□□□□ -0.97
VPS53-204ENST00000437048 PKNOX2Q96KN3 472 aa8.99□□□□□ -0.97
VPS53-204ENST00000437048 TPM2P07951 284 aa8.99□□□□□ -0.97
VPS53-204ENST00000437048 DRC7Q8IY82 874 aa8.99□□□□□ -0.97
VPS53-204ENST00000437048 ARGLU1Q9NWB6 273 aaPredicted RBP8.98□□□□□ -0.97
VPS53-204ENST00000437048 USP8P40818 1118 aa8.98□□□□□ -0.97
VPS53-204ENST00000437048 CAGE1Q8TC20 777 aa8.98□□□□□ -0.97
VPS53-204ENST00000437048 GSE1Q14687 1217 aa8.96□□□□□ -0.97
VPS53-204ENST00000437048 FGD1P98174 961 aa8.96□□□□□ -0.97
VPS53-204ENST00000437048 DIAPH3Q9NSV4 1193 aa8.96□□□□□ -0.97
VPS53-204ENST00000437048 KIAA1211Q6ZU35 1233 aa8.96□□□□□ -0.98
VPS53-204ENST00000437048 TPM1P09493 284 aa8.96□□□□□ -0.98
VPS53-204ENST00000437048 ST18O60284 1047 aa8.95□□□□□ -0.98
VPS53-204ENST00000437048 NOC3LQ8WTT2 800 aaKnown RBP8.95□□□□□ -0.98
VPS53-204ENST00000437048 CCP110O43303 1012 aa8.94□□□□□ -0.98
VPS53-204ENST00000437048 PABPN1Q86U42 306 aaKnown RBP eCLIP8.94□□□□□ -0.98
VPS53-204ENST00000437048 DCTN1Q14203 1278 aa8.94□□□□□ -0.98
VPS53-204ENST00000437048 KCNH8Q96L42 1107 aa8.94□□□□□ -0.98
VPS53-204ENST00000437048 PDCL2Q8N4E4 241 aa8.94□□□□□ -0.98
VPS53-204ENST00000437048 GPATCH3Q96I76 525 aa8.94□□□□□ -0.98
VPS53-204ENST00000437048 C11orf95C9JLR9 678 aaPredicted RBP8.93□□□□□ -0.98
VPS53-204ENST00000437048 PLPPR3Q6T4P5 718 aa8.93□□□□□ -0.98
VPS53-204ENST00000437048 ERCC4Q92889 916 aaPredicted RBP8.93□□□□□ -0.98
VPS53-204ENST00000437048 VPS8Q8N3P4 1428 aa8.93□□□□□ -0.98
VPS53-204ENST00000437048 LRRFIP1Q32MZ4 808 aaKnown RBP8.93□□□□□ -0.98
VPS53-204ENST00000437048 KCNJ4P48050 445 aa8.93□□□□□ -0.98
VPS53-204ENST00000437048 TSR1Q2NL82 804 aaKnown RBP8.92□□□□□ -0.98
VPS53-204ENST00000437048 BAZ1BQ9UIG0 1483 aaKnown RBP8.92□□□□□ -0.98
VPS53-204ENST00000437048 STAG3Q9UJ98 1225 aa8.92□□□□□ -0.98
VPS53-204ENST00000437048 CENPQQ7L2Z9 268 aaPredicted RBP8.92□□□□□ -0.98
VPS53-204ENST00000437048 RRP9O43818 475 aaKnown RBP8.91□□□□□ -0.98
VPS53-204ENST00000437048 HOOK1Q9UJC3 728 aaKnown RBP8.91□□□□□ -0.98
VPS53-204ENST00000437048 CGNL1Q0VF96 1302 aa8.91□□□□□ -0.98
VPS53-204ENST00000437048 TMF1P82094 1093 aa8.91□□□□□ -0.98
VPS53-204ENST00000437048 ANKRD30AQ9BXX3 1397 aa8.91□□□□□ -0.98
VPS53-204ENST00000437048 NPM1P06748 294 aaKnown RBP eCLIP8.91□□□□□ -0.98
VPS53-204ENST00000437048 SCRIBQ14160 1630 aa8.9□□□□□ -0.98
VPS53-204ENST00000437048 ARHGAP35Q9NRY4 1499 aa8.9□□□□□ -0.98
VPS53-204ENST00000437048 KANK1Q14678 1352 aa8.9□□□□□ -0.98
VPS53-204ENST00000437048 LETM1O95202 739 aaPredicted RBP8.9□□□□□ -0.98
VPS53-204ENST00000437048 SETD5Q9C0A6 1442 aa8.9□□□□□ -0.98
VPS53-204ENST00000437048 IPO7O95373 1038 aaKnown RBP8.9□□□□□ -0.99
VPS53-204ENST00000437048 WRNQ14191 1432 aaPredicted RBP eCLIP8.9□□□□□ -0.99
VPS53-204ENST00000437048 HSP90B2PQ58FF3 399 aa8.89□□□□□ -0.99
VPS53-204ENST00000437048 HDGFP51858 240 aaKnown RBP8.89□□□□□ -0.99
VPS53-204ENST00000437048 STAC3Q96MF2 364 aa8.89□□□□□ -0.99
VPS53-204ENST00000437048 LMOD3Q0VAK6 560 aa8.89□□□□□ -0.99
VPS53-204ENST00000437048 TXLNBQ8N3L3 684 aa8.89□□□□□ -0.99
VPS53-204ENST00000437048 CCDC191Q8NCU4 936 aa8.89□□□□□ -0.99
VPS53-204ENST00000437048 MYO6Q9UM54 1294 aa8.89□□□□□ -0.99
VPS53-204ENST00000437048 ANKRD20A12PQ8NF67 263 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 NINLQ9Y2I6 1382 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 ROCK1Q13464 1354 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 KIF7Q2M1P5 1343 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 HSP90B1P14625 803 aaKnown RBP8.88□□□□□ -0.99
VPS53-204ENST00000437048 AK7Q96M32 723 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 FMN1Q68DA7 1419 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 SCAPERQ9BY12 1400 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 ZBED9Q6R2W3 1325 aa8.88□□□□□ -0.99
VPS53-204ENST00000437048 GNL2Q13823 731 aaKnown RBP8.87□□□□□ -0.99
VPS53-204ENST00000437048 SPRYD3Q8NCJ5 442 aa8.87□□□□□ -0.99
VPS53-204ENST00000437048 PES1O00541 588 aaKnown RBP8.87□□□□□ -0.99
VPS53-204ENST00000437048 REC8O95072 547 aa8.87□□□□□ -0.99
VPS53-204ENST00000437048 RCAN3Q9UKA8 241 aa8.87□□□□□ -0.99
VPS53-204ENST00000437048 TAOK2Q9UL54 1235 aa8.87□□□□□ -0.99
VPS53-204ENST00000437048 RDXP35241 583 aaKnown RBP8.87□□□□□ -0.99
VPS53-204ENST00000437048 PLCB2Q00722 1185 aa8.87□□□□□ -0.99
VPS53-204ENST00000437048 FAM107BQ9H098 131 aa8.87□□□□□ -0.99
VPS53-204ENST00000437048 NUCB2P80303 420 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 CARD11Q9BXL7 1154 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 CEP89Q96ST8 783 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 MRE11P49959 708 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 FAM161AQ3B820 660 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 FAM43AQ8N2R8 423 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 GOLGA6L19H0YKK7 550 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 RRP12Q5JTH9 1297 aaKnown RBP8.86□□□□□ -0.99
VPS53-204ENST00000437048 GOLGA6L7A0A1B0GV03 622 aa8.86□□□□□ -0.99
VPS53-204ENST00000437048 INCENPQ9NQS7 918 aa8.85□□□□□ -0.99
VPS53-204ENST00000437048 NAT10Q9H0A0 1025 aaKnown RBP8.85□□□□□ -0.99
VPS53-204ENST00000437048 MBD3O95983 291 aa8.85□□□□□ -0.99
VPS53-204ENST00000437048 NLRP13Q86W25 1043 aa8.85□□□□□ -0.99
VPS53-204ENST00000437048 NEXNQ0ZGT2 675 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms