RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 FANCAO15360 1455 aa24.07■■□□□ 1.44
SHOX2-202ENST00000425436 ARHGAP5Q13017 1502 aa24.07■■□□□ 1.44
SHOX2-202ENST00000425436 EFCAB2Q5VUJ9 269 aa24.06■■□□□ 1.44
SHOX2-202ENST00000425436 ZNF777Q9ULD5 760 aaPredicted RBP24.05■■□□□ 1.44
SHOX2-202ENST00000425436 PREX2Q70Z35 1606 aa24.04■■□□□ 1.44
SHOX2-202ENST00000425436 CFDP1Q9UEE9 299 aaPredicted RBP24.04■■□□□ 1.44
SHOX2-202ENST00000425436 AKNAQ7Z591 1439 aa24.03■■□□□ 1.44
SHOX2-202ENST00000425436 NEO1Q92859 1461 aa24.02■■□□□ 1.44
SHOX2-202ENST00000425436 COL17A1Q9UMD9 1497 aaPredicted RBP24.02■■□□□ 1.44
SHOX2-202ENST00000425436 ARAP3Q8WWN8 1544 aa24.01■■□□□ 1.43
SHOX2-202ENST00000425436 KDM6BO15054 1643 aa24■■□□□ 1.43
SHOX2-202ENST00000425436 CFAP74Q9C0B2 1584 aa23.98■■□□□ 1.43
SHOX2-202ENST00000425436 ITSN2Q9NZM3 1697 aa23.97■■□□□ 1.43
SHOX2-202ENST00000425436 PHLDB1Q86UU1 1377 aa23.97■■□□□ 1.43
SHOX2-202ENST00000425436 ZNF644Q9H582 1327 aaPredicted RBP23.97■■□□□ 1.43
SHOX2-202ENST00000425436 RAPGEF3O95398 923 aa23.96■■□□□ 1.43
SHOX2-202ENST00000425436 ADGRL1O94910 1474 aa23.94■■□□□ 1.42
SHOX2-202ENST00000425436 SCAPERQ9BY12 1400 aa23.94■■□□□ 1.42
SHOX2-202ENST00000425436 MYOM3Q5VTT5 1437 aa23.93■■□□□ 1.42
SHOX2-202ENST00000425436 SAMD9LQ8IVG5 1584 aa23.93■■□□□ 1.42
SHOX2-202ENST00000425436 HNRNPMP52272 730 aaKnown RBP eCLIP23.91■■□□□ 1.42
SHOX2-202ENST00000425436 DENND4BO75064 1496 aaPredicted RBP23.89■■□□□ 1.42
SHOX2-202ENST00000425436 ARHGEF12Q9NZN5 1544 aa23.89■■□□□ 1.42
SHOX2-202ENST00000425436 AFAP1Q8N556 730 aa23.88■■□□□ 1.41
SHOX2-202ENST00000425436 SENP3Q9H4L4 574 aaPredicted RBP23.88■■□□□ 1.41
SHOX2-202ENST00000425436 ABCC1P33527 1531 aa23.87■■□□□ 1.41
SHOX2-202ENST00000425436 SYCP2Q9BX26 1530 aa23.85■■□□□ 1.41
SHOX2-202ENST00000425436 MIA2Q96PC5 1412 aa23.85■■□□□ 1.41
SHOX2-202ENST00000425436 CAMSAP2Q08AD1 1489 aa23.84■■□□□ 1.41
SHOX2-202ENST00000425436 RICTORQ6R327 1708 aa23.84■■□□□ 1.41
SHOX2-202ENST00000425436 TRAPPC8Q9Y2L5 1435 aa23.84■■□□□ 1.41
SHOX2-202ENST00000425436 FRMPD1Q5SYB0 1578 aa23.84■■□□□ 1.41
SHOX2-202ENST00000425436 FGD6Q6ZV73 1430 aa23.83■■□□□ 1.41
SHOX2-202ENST00000425436 POGZQ7Z3K3 1410 aa23.83■■□□□ 1.4
SHOX2-202ENST00000425436 PLEKHH2Q8IVE3 1493 aa23.81■■□□□ 1.4
SHOX2-202ENST00000425436 KIAA1107Q9UPP5 1409 aa23.81■■□□□ 1.4
SHOX2-202ENST00000425436 PTPN23Q9H3S7 1636 aa23.81■■□□□ 1.4
SHOX2-202ENST00000425436 MBD5Q9P267 1494 aa23.78■■□□□ 1.4
SHOX2-202ENST00000425436 FAM50AQ14320 339 aaKnown RBP23.78■■□□□ 1.4
SHOX2-202ENST00000425436 MYT1LQ9UL68 1186 aa23.78■■□□□ 1.4
SHOX2-202ENST00000425436 ZNF518AQ6AHZ1 1483 aa23.78■■□□□ 1.4
SHOX2-202ENST00000425436 TCOF1Q13428 1488 aaKnown RBP23.73■■□□□ 1.39
SHOX2-202ENST00000425436 KDM5CP41229 1560 aa23.72■■□□□ 1.39
SHOX2-202ENST00000425436 HRCP23327 699 aa23.72■■□□□ 1.39
SHOX2-202ENST00000425436 RSPH4AQ5TD94 716 aa23.71■■□□□ 1.39
SHOX2-202ENST00000425436 SPAG9O60271 1321 aaKnown RBP23.71■■□□□ 1.39
SHOX2-202ENST00000425436 ZMYM4Q5VZL5 1548 aa23.7■■□□□ 1.39
SHOX2-202ENST00000425436 YEATS2Q9ULM3 1422 aa23.7■■□□□ 1.38
SHOX2-202ENST00000425436 CCDC141Q6ZP82 1450 aa23.7■■□□□ 1.38
SHOX2-202ENST00000425436 ARHGEF5Q12774 1597 aa23.69■■□□□ 1.38
SHOX2-202ENST00000425436 TSPY4P0CV99 314 aa23.68■■□□□ 1.38
SHOX2-202ENST00000425436 TSPY10P0CW01 314 aa23.68■■□□□ 1.38
SHOX2-202ENST00000425436 MLH3Q9UHC1 1453 aa23.67■■□□□ 1.38
SHOX2-202ENST00000425436 HECW2Q9P2P5 1572 aa23.67■■□□□ 1.38
SHOX2-202ENST00000425436 ZFYVE16Q7Z3T8 1539 aa23.66■■□□□ 1.38
SHOX2-202ENST00000425436 MAGI2Q86UL8 1455 aa23.66■■□□□ 1.38
SHOX2-202ENST00000425436 KIDINS220Q9ULH0 1771 aa23.66■■□□□ 1.38
SHOX2-202ENST00000425436 ABCC5O15440 1437 aa23.65■■□□□ 1.38
SHOX2-202ENST00000425436 ITGAEP38570 1179 aa23.64■■□□□ 1.38
SHOX2-202ENST00000425436 RRBP1Q9P2E9 1410 aaKnown RBP23.64■■□□□ 1.37
SHOX2-202ENST00000425436 DAPK1P53355 1430 aa23.63■■□□□ 1.37
SHOX2-202ENST00000425436 DNMT1P26358 1616 aaKnown RBP23.63■■□□□ 1.37
SHOX2-202ENST00000425436 CHIC2Q9UKJ5 165 aa23.63■■□□□ 1.37
SHOX2-202ENST00000425436 ATP7AQ04656 1500 aa23.62■■□□□ 1.37
SHOX2-202ENST00000425436 PHF23Q9BUL5 403 aaPredicted RBP23.62■■□□□ 1.37
SHOX2-202ENST00000425436 ARHGEF40Q8TER5 1519 aa23.61■■□□□ 1.37
SHOX2-202ENST00000425436 INO80Q9ULG1 1556 aaPredicted RBP23.61■■□□□ 1.37
SHOX2-202ENST00000425436 ABCA6Q8N139 1617 aa23.6■■□□□ 1.37
SHOX2-202ENST00000425436 ATP10AO60312 1499 aa23.59■■□□□ 1.37
SHOX2-202ENST00000425436 DIP2CQ9Y2E4 1556 aa23.59■■□□□ 1.37
SHOX2-202ENST00000425436 C9orf84Q5VXU9 1444 aa23.59■■□□□ 1.37
SHOX2-202ENST00000425436 CROCC2H7BZ55 1655 aa23.58■■□□□ 1.37
SHOX2-202ENST00000425436 RTEL1-TNFRSF6BF6WH68 1400 aa23.58■■□□□ 1.37
SHOX2-202ENST00000425436 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.58■■□□□ 1.36
SHOX2-202ENST00000425436 PTPRKQ15262 1439 aa23.56■■□□□ 1.36
SHOX2-202ENST00000425436 ARID4BQ4LE39 1312 aaPredicted RBP23.56■■□□□ 1.36
SHOX2-202ENST00000425436 MAST1Q9Y2H9 1570 aa23.55■■□□□ 1.36
SHOX2-202ENST00000425436 SIGLEC1Q9BZZ2 1709 aa23.54■■□□□ 1.36
SHOX2-202ENST00000425436 RRP7BPQ9NSQ0 103 aa23.54■■□□□ 1.36
SHOX2-202ENST00000425436 SHANK2Q9UPX8 1470 aa23.52■■□□□ 1.36
SHOX2-202ENST00000425436 ADGBQ8N7X0 1667 aa23.5■■□□□ 1.35
SHOX2-202ENST00000425436 A2MP01023 1474 aa23.5■■□□□ 1.35
SHOX2-202ENST00000425436 ZEB1P37275 1124 aaPredicted RBP23.49■■□□□ 1.35
SHOX2-202ENST00000425436 MLECQ14165 292 aa23.49■■□□□ 1.35
SHOX2-202ENST00000425436 ANKRD30AQ9BXX3 1397 aa23.47■■□□□ 1.35
SHOX2-202ENST00000425436 NCOA1Q15788 1441 aa23.47■■□□□ 1.35
SHOX2-202ENST00000425436 DHX29Q7Z478 1369 aaKnown RBP23.46■■□□□ 1.35
SHOX2-202ENST00000425436 PLXNC1O60486 1568 aa23.45■■□□□ 1.34
SHOX2-202ENST00000425436 KIF15Q9NS87 1388 aa23.45■■□□□ 1.34
SHOX2-202ENST00000425436 REREQ9P2R6 1566 aa23.44■■□□□ 1.34
SHOX2-202ENST00000425436 ADGRL2O95490 1459 aa23.43■■□□□ 1.34
SHOX2-202ENST00000425436 KIF3BO15066 747 aa23.41■■□□□ 1.34
SHOX2-202ENST00000425436 DUOX2Q9NRD8 1548 aa23.4■■□□□ 1.34
SHOX2-202ENST00000425436 AGLP35573 1532 aa23.39■■□□□ 1.33
SHOX2-202ENST00000425436 KDM4FA0A1W2PPD8 638 aa23.38■■□□□ 1.33
SHOX2-202ENST00000425436 GGT6Q6P531 493 aa23.38■■□□□ 1.33
SHOX2-202ENST00000425436 BCORL1Q5H9F3 1711 aa23.38■■□□□ 1.33
SHOX2-202ENST00000425436 ROCK1Q13464 1354 aa23.38■■□□□ 1.33
SHOX2-202ENST00000425436 ANKRD50Q9ULJ7 1429 aa23.32■■□□□ 1.32
SHOX2-202ENST00000425436 ADAMTSL3P82987 1691 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms