RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 ABCA9Q8IUA7 1624 aa20.51■□□□□ 0.87
PRPF39-202ENST00000424478 CD109Q6YHK3 1445 aa20.5■□□□□ 0.87
PRPF39-202ENST00000424478 PTPN23Q9H3S7 1636 aa20.49■□□□□ 0.87
PRPF39-202ENST00000424478 KIF13AQ9H1H9 1805 aa20.49■□□□□ 0.87
PRPF39-202ENST00000424478 PREX2Q70Z35 1606 aa20.49■□□□□ 0.87
PRPF39-202ENST00000424478 RRBP1Q9P2E9 1410 aaKnown RBP20.48■□□□□ 0.87
PRPF39-202ENST00000424478 HNRNPMP52272 730 aaKnown RBP eCLIP20.48■□□□□ 0.87
PRPF39-202ENST00000424478 ITSN2Q9NZM3 1697 aa20.47■□□□□ 0.87
PRPF39-202ENST00000424478 PLCH2O75038 1416 aa20.46■□□□□ 0.87
PRPF39-202ENST00000424478 CAMSAP2Q08AD1 1489 aa20.45■□□□□ 0.86
PRPF39-202ENST00000424478 CHIC2Q9UKJ5 165 aa20.45■□□□□ 0.86
PRPF39-202ENST00000424478 SAMD9LQ8IVG5 1584 aa20.44■□□□□ 0.86
PRPF39-202ENST00000424478 FANCAO15360 1455 aa20.43■□□□□ 0.86
PRPF39-202ENST00000424478 MAP3K4Q9Y6R4 1608 aa20.42■□□□□ 0.86
PRPF39-202ENST00000424478 EFCAB2Q5VUJ9 269 aa20.42■□□□□ 0.86
PRPF39-202ENST00000424478 MIA2Q96PC5 1412 aa20.41■□□□□ 0.86
PRPF39-202ENST00000424478 PTPRKQ15262 1439 aa20.4■□□□□ 0.86
PRPF39-202ENST00000424478 SYCP2Q9BX26 1530 aa20.39■□□□□ 0.86
PRPF39-202ENST00000424478 ARHGEF12Q9NZN5 1544 aa20.39■□□□□ 0.85
PRPF39-202ENST00000424478 GLI2P10070 1586 aa20.38■□□□□ 0.85
PRPF39-202ENST00000424478 PPRC1Q5VV67 1664 aaKnown RBP20.36■□□□□ 0.85
PRPF39-202ENST00000424478 AFAP1Q8N556 730 aa20.36■□□□□ 0.85
PRPF39-202ENST00000424478 TCOF1Q13428 1488 aaKnown RBP20.36■□□□□ 0.85
PRPF39-202ENST00000424478 RAPGEF3O95398 923 aa20.34■□□□□ 0.85
PRPF39-202ENST00000424478 AKNAQ7Z591 1439 aa20.34■□□□□ 0.85
PRPF39-202ENST00000424478 ADGRL1O94910 1474 aa20.33■□□□□ 0.85
PRPF39-202ENST00000424478 TRAPPC8Q9Y2L5 1435 aa20.33■□□□□ 0.85
PRPF39-202ENST00000424478 SCAPERQ9BY12 1400 aa20.33■□□□□ 0.84
PRPF39-202ENST00000424478 RRP7BPQ9NSQ0 103 aa20.33■□□□□ 0.84
PRPF39-202ENST00000424478 ABCC5O15440 1437 aa20.33■□□□□ 0.84
PRPF39-202ENST00000424478 MBD5Q9P267 1494 aa20.31■□□□□ 0.84
PRPF39-202ENST00000424478 DAPK1P53355 1430 aa20.31■□□□□ 0.84
PRPF39-202ENST00000424478 ABCC1P33527 1531 aa20.31■□□□□ 0.84
PRPF39-202ENST00000424478 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
PRPF39-202ENST00000424478 DNMT1P26358 1616 aaKnown RBP20.28■□□□□ 0.84
PRPF39-202ENST00000424478 ARAP3Q8WWN8 1544 aa20.28■□□□□ 0.84
PRPF39-202ENST00000424478 COL17A1Q9UMD9 1497 aaPredicted RBP20.25■□□□□ 0.83
PRPF39-202ENST00000424478 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.25■□□□□ 0.83
PRPF39-202ENST00000424478 CCDC141Q6ZP82 1450 aa20.24■□□□□ 0.83
PRPF39-202ENST00000424478 TSPY4P0CV99 314 aa20.24■□□□□ 0.83
PRPF39-202ENST00000424478 TSPY10P0CW01 314 aa20.24■□□□□ 0.83
PRPF39-202ENST00000424478 C9orf84Q5VXU9 1444 aa20.22■□□□□ 0.83
PRPF39-202ENST00000424478 KIAA1107Q9UPP5 1409 aa20.22■□□□□ 0.83
PRPF39-202ENST00000424478 NEO1Q92859 1461 aa20.22■□□□□ 0.83
PRPF39-202ENST00000424478 CROCC2H7BZ55 1655 aa20.21■□□□□ 0.83
PRPF39-202ENST00000424478 TEX14Q8IWB6 1497 aa20.21■□□□□ 0.83
PRPF39-202ENST00000424478 CFAP74Q9C0B2 1584 aa20.2■□□□□ 0.82
PRPF39-202ENST00000424478 PLEKHH2Q8IVE3 1493 aa20.2■□□□□ 0.82
PRPF39-202ENST00000424478 SPAG9O60271 1321 aaKnown RBP20.19■□□□□ 0.82
PRPF39-202ENST00000424478 ARHGEF5Q12774 1597 aa20.19■□□□□ 0.82
PRPF39-202ENST00000424478 DENND4BO75064 1496 aaPredicted RBP20.18■□□□□ 0.82
PRPF39-202ENST00000424478 POGZQ7Z3K3 1410 aa20.18■□□□□ 0.82
PRPF39-202ENST00000424478 KDM6BO15054 1643 aa20.16■□□□□ 0.82
PRPF39-202ENST00000424478 FRMPD1Q5SYB0 1578 aa20.15■□□□□ 0.82
PRPF39-202ENST00000424478 RICTORQ6R327 1708 aa20.15■□□□□ 0.82
PRPF39-202ENST00000424478 ZNF518AQ6AHZ1 1483 aa20.14■□□□□ 0.81
PRPF39-202ENST00000424478 NCOA1Q15788 1441 aa20.14■□□□□ 0.81
PRPF39-202ENST00000424478 NAIPQ13075 1403 aa20.13■□□□□ 0.81
PRPF39-202ENST00000424478 RAB3GAP2Q9H2M9 1393 aa20.13■□□□□ 0.81
PRPF39-202ENST00000424478 KIF15Q9NS87 1388 aa20.12■□□□□ 0.81
PRPF39-202ENST00000424478 ZFYVE16Q7Z3T8 1539 aa20.12■□□□□ 0.81
PRPF39-202ENST00000424478 YEATS2Q9ULM3 1422 aa20.12■□□□□ 0.81
PRPF39-202ENST00000424478 RSPH4AQ5TD94 716 aa20.11■□□□□ 0.81
PRPF39-202ENST00000424478 ADGBQ8N7X0 1667 aa20.11■□□□□ 0.81
PRPF39-202ENST00000424478 ANKRD30AQ9BXX3 1397 aa20.11■□□□□ 0.81
PRPF39-202ENST00000424478 ATP7AQ04656 1500 aa20.1■□□□□ 0.81
PRPF39-202ENST00000424478 KIDINS220Q9ULH0 1771 aa20.1■□□□□ 0.81
PRPF39-202ENST00000424478 SHANK2Q9UPX8 1470 aa20.1■□□□□ 0.81
PRPF39-202ENST00000424478 SETD5Q9C0A6 1442 aa20.09■□□□□ 0.81
PRPF39-202ENST00000424478 HFM1A2PYH4 1435 aa20.09■□□□□ 0.81
PRPF39-202ENST00000424478 KDM5CP41229 1560 aa20.08■□□□□ 0.81
PRPF39-202ENST00000424478 INO80Q9ULG1 1556 aaPredicted RBP20.08■□□□□ 0.8
PRPF39-202ENST00000424478 HECW2Q9P2P5 1572 aa20.06■□□□□ 0.8
PRPF39-202ENST00000424478 ADGRL2O95490 1459 aa20.06■□□□□ 0.8
PRPF39-202ENST00000424478 ROCK1Q13464 1354 aa20.05■□□□□ 0.8
PRPF39-202ENST00000424478 ABCA6Q8N139 1617 aa20.05■□□□□ 0.8
PRPF39-202ENST00000424478 MAST1Q9Y2H9 1570 aa20.05■□□□□ 0.8
PRPF39-202ENST00000424478 TRIM52Q96A61 297 aa20.03■□□□□ 0.8
PRPF39-202ENST00000424478 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.03■□□□□ 0.82e-6■■□□□ 11.5
PRPF39-202ENST00000424478 GCC2Q8IWJ2 1684 aa20.03■□□□□ 0.8
PRPF39-202ENST00000424478 ANKRD50Q9ULJ7 1429 aa20.03■□□□□ 0.8
PRPF39-202ENST00000424478 MLH3Q9UHC1 1453 aa20.01■□□□□ 0.79
PRPF39-202ENST00000424478 PLXNC1O60486 1568 aa20■□□□□ 0.79
PRPF39-202ENST00000424478 RTEL1-TNFRSF6BF6WH68 1400 aa20■□□□□ 0.79
PRPF39-202ENST00000424478 DIP2CQ9Y2E4 1556 aa19.99■□□□□ 0.79
PRPF39-202ENST00000424478 KIF3BO15066 747 aa19.99■□□□□ 0.79
PRPF39-202ENST00000424478 SIGLEC1Q9BZZ2 1709 aa19.97■□□□□ 0.79
PRPF39-202ENST00000424478 MLECQ14165 292 aa19.97■□□□□ 0.79
PRPF39-202ENST00000424478 ZMYM4Q5VZL5 1548 aa19.96■□□□□ 0.79
PRPF39-202ENST00000424478 A2MP01023 1474 aa19.96■□□□□ 0.79
PRPF39-202ENST00000424478 FOXD1Q16676 465 aa19.95■□□□□ 0.78
PRPF39-202ENST00000424478 GGT6Q6P531 493 aa19.95■□□□□ 0.78
PRPF39-202ENST00000424478 DUOX2Q9NRD8 1548 aa19.95■□□□□ 0.78
PRPF39-202ENST00000424478 CCER1Q8TC90 406 aaPredicted RBP19.94■□□□□ 0.78
PRPF39-202ENST00000424478 DHX29Q7Z478 1369 aaKnown RBP19.93■□□□□ 0.78
PRPF39-202ENST00000424478 ARID4BQ4LE39 1312 aaPredicted RBP19.91■□□□□ 0.78
PRPF39-202ENST00000424478 NUP155O75694 1391 aa19.9■□□□□ 0.78
PRPF39-202ENST00000424478 ARHGEF40Q8TER5 1519 aa19.89■□□□□ 0.78
PRPF39-202ENST00000424478 ATP10AO60312 1499 aa19.89■□□□□ 0.77
PRPF39-202ENST00000424478 DHX57Q6P158 1386 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms