RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 UGGT2Q9NYU1 1516 aa29.13■■■□□ 2.25
USP48-205ENST00000421625 GCC2Q8IWJ2 1684 aa29.13■■■□□ 2.25
USP48-205ENST00000421625 FOXD1Q16676 465 aa29.11■■■□□ 2.25
USP48-205ENST00000421625 MAGI3Q5TCQ9 1506 aa29.11■■■□□ 2.25
USP48-205ENST00000421625 WDR62O43379 1518 aa29.1■■■□□ 2.25
USP48-205ENST00000421625 DEKP35659 375 aaKnown RBP29.09■■■□□ 2.25
USP48-205ENST00000421625 MPHOSPH9Q99550 1183 aa29.08■■■□□ 2.25
USP48-205ENST00000421625 ARHGEF11O15085 1522 aa29.08■■■□□ 2.25
USP48-205ENST00000421625 THOC2Q8NI27 1593 aaKnown RBP29.06■■■□□ 2.24
USP48-205ENST00000421625 PBRM1Q86U86 1689 aa29.06■■■□□ 2.24
USP48-205ENST00000421625 MYT1LQ9UL68 1186 aa29.06■■■□□ 2.24
USP48-205ENST00000421625 IFT140Q96RY7 1462 aa29.06■■■□□ 2.24
USP48-205ENST00000421625 TCOF1Q13428 1488 aaKnown RBP29.04■■■□□ 2.24
USP48-205ENST00000421625 NBPF8Q3BBV2 869 aa29.03■■■□□ 2.24
USP48-205ENST00000421625 NOP58Q9Y2X3 529 aaKnown RBP29.02■■■□□ 2.24
USP48-205ENST00000421625 PAK3O75914 559 aaPredicted RBP29■■■□□ 2.23
USP48-205ENST00000421625 KIF7Q2M1P5 1343 aa29■■■□□ 2.23
USP48-205ENST00000421625 AKNAQ7Z591 1439 aa28.98■■■□□ 2.23
USP48-205ENST00000421625 NBR1Q14596 966 aa28.97■■■□□ 2.23
USP48-205ENST00000421625 ADAMTS12P58397 1594 aa28.96■■■□□ 2.23
USP48-205ENST00000421625 FBLN2P98095 1184 aa28.94■■■□□ 2.22
USP48-205ENST00000421625 SPATA31E1Q6ZUB1 1445 aa28.92■■■□□ 2.22
USP48-205ENST00000421625 CNGB1Q14028 1251 aaPredicted RBP28.91■■■□□ 2.22
USP48-205ENST00000421625 TEX14Q8IWB6 1497 aa28.91■■■□□ 2.22
USP48-205ENST00000421625 SMG6Q86US8 1419 aaKnown RBP28.91■■■□□ 2.22
USP48-205ENST00000421625 ARID3CA6NKF2 412 aa28.9■■■□□ 2.22
USP48-205ENST00000421625 ANKRD30BQ9BXX2 1392 aa28.9■■■□□ 2.22
USP48-205ENST00000421625 RPRD2Q5VT52 1461 aaKnown RBP28.9■■■□□ 2.22
USP48-205ENST00000421625 EIF4G3O43432 1585 aaKnown RBP28.89■■■□□ 2.21
USP48-205ENST00000421625 POLR1AO95602 1720 aaPredicted RBP28.88■■■□□ 2.21
USP48-205ENST00000421625 SENP3-EIF4A1A0A087X0R7 540 aa28.84■■■□□ 2.21
USP48-205ENST00000421625 NUDCQ9Y266 331 aa28.84■■■□□ 2.21
USP48-205ENST00000421625 CCDC136Q96JN2 1154 aa28.84■■■□□ 2.21
USP48-205ENST00000421625 CHMP7Q8WUX9 453 aaPredicted RBP28.83■■■□□ 2.21
USP48-205ENST00000421625 IQGAP2Q13576 1575 aa28.82■■■□□ 2.2
USP48-205ENST00000421625 MIA2Q96PC5 1412 aa28.82■■■□□ 2.2
USP48-205ENST00000421625 CDK13Q14004 1512 aaKnown RBP28.81■■■□□ 2.2
USP48-205ENST00000421625 DHX29Q7Z478 1369 aaKnown RBP28.81■■■□□ 2.2
USP48-205ENST00000421625 RNF123Q5XPI4 1314 aa28.81■■■□□ 2.2
USP48-205ENST00000421625 EPRSP07814 1512 aaKnown RBP28.81■■■□□ 2.2
USP48-205ENST00000421625 POLR3GLQ9BT43 218 aa28.77■■■□□ 2.2
USP48-205ENST00000421625 ANP32AP39687 249 aaKnown RBP28.76■■■□□ 2.2
USP48-205ENST00000421625 IPO9Q96P70 1041 aaKnown RBP28.76■■■□□ 2.2
USP48-205ENST00000421625 SLC4A1APQ9BWU0 796 aaKnown RBP28.75■■■□□ 2.19
USP48-205ENST00000421625 GRIN2AQ12879 1464 aa28.74■■■□□ 2.19
USP48-205ENST00000421625 DAPK1P53355 1430 aa28.73■■■□□ 2.19
USP48-205ENST00000421625 BCORL1Q5H9F3 1711 aa28.7■■■□□ 2.19
USP48-205ENST00000421625 ROCK1Q13464 1354 aa28.7■■■□□ 2.18
USP48-205ENST00000421625 ABCC5O15440 1437 aa28.68■■■□□ 2.18
USP48-205ENST00000421625 ZNF644Q9H582 1327 aaPredicted RBP28.67■■■□□ 2.18
USP48-205ENST00000421625 ZBTB47Q9UFB7 747 aaPredicted RBP28.67■■■□□ 2.18
USP48-205ENST00000421625 KIAA0586Q9BVV6 1533 aa28.66■■■□□ 2.18
USP48-205ENST00000421625 USP47Q96K76 1375 aa28.65■■■□□ 2.18
USP48-205ENST00000421625 ZNF326Q5BKZ1 582 aaKnown RBP28.65■■■□□ 2.18
USP48-205ENST00000421625 DNMT1P26358 1616 aaKnown RBP28.63■■■□□ 2.17
USP48-205ENST00000421625 MAGI1Q96QZ7 1491 aaPredicted RBP28.63■■■□□ 2.17
USP48-205ENST00000421625 PNISRQ8TF01 805 aaKnown RBP28.63■■■□□ 2.17
USP48-205ENST00000421625 SYNJ2O15056 1496 aa28.61■■■□□ 2.17
USP48-205ENST00000421625 RTL5Q5HYW3 569 aaPredicted RBP28.61■■■□□ 2.17
USP48-205ENST00000421625 MBD5Q9P267 1494 aa28.6■■■□□ 2.17
USP48-205ENST00000421625 PZPP20742 1482 aa28.59■■■□□ 2.17
USP48-205ENST00000421625 DISP1Q96F81 1524 aa28.58■■■□□ 2.17
USP48-205ENST00000421625 TMC1Q8TDI8 760 aa28.57■■■□□ 2.16
USP48-205ENST00000421625 CEP170Q5SW79 1584 aa28.56■■■□□ 2.16
USP48-205ENST00000421625 KDM5CP41229 1560 aa28.53■■■□□ 2.16
USP48-205ENST00000421625 NPM2Q86SE8 214 aaKnown RBP28.52■■■□□ 2.16
USP48-205ENST00000421625 JPH4Q96JJ6 628 aa28.51■■■□□ 2.16
USP48-205ENST00000421625 KIAA0556O60303 1618 aa28.51■■■□□ 2.15
USP48-205ENST00000421625 KIF14Q15058 1648 aa28.5■■■□□ 2.15
USP48-205ENST00000421625 EXOC6Q8TAG9 804 aa28.49■■■□□ 2.15
USP48-205ENST00000421625 RRP1P56182 461 aaKnown RBP28.47■■■□□ 2.15
USP48-205ENST00000421625 ARID4BQ4LE39 1312 aaPredicted RBP28.47■■■□□ 2.15
USP48-205ENST00000421625 KIAA1107Q9UPP5 1409 aa28.47■■■□□ 2.15
USP48-205ENST00000421625 LRPPRCP42704 1394 aaKnown RBP28.46■■■□□ 2.15
USP48-205ENST00000421625 PKD2Q13563 968 aa28.44■■■□□ 2.14
USP48-205ENST00000421625 ANO8Q9HCE9 1232 aaPredicted RBP28.44■■■□□ 2.14
USP48-205ENST00000421625 KIF15Q9NS87 1388 aa28.42■■■□□ 2.14
USP48-205ENST00000421625 ROCK2O75116 1388 aaKnown RBP28.42■■■□□ 2.14
USP48-205ENST00000421625 NUP160Q12769 1436 aa28.41■■■□□ 2.14
USP48-205ENST00000421625 SALL2Q9Y467 1007 aaPredicted RBP28.4■■■□□ 2.14
USP48-205ENST00000421625 LAS1LQ9Y4W2 734 aaKnown RBP28.39■■■□□ 2.14
USP48-205ENST00000421625 PLB1Q6P1J6 1458 aa28.39■■■□□ 2.14
USP48-205ENST00000421625 TCERG1O14776 1098 aaKnown RBP28.39■■■□□ 2.14
USP48-205ENST00000421625 PDE4AP27815 886 aa28.38■■■□□ 2.13
USP48-205ENST00000421625 CARD11Q9BXL7 1154 aa28.38■■■□□ 2.13
USP48-205ENST00000421625 NUP153P49790 1475 aaKnown RBP28.38■■■□□ 2.13
USP48-205ENST00000421625 MYBBP1AQ9BQG0 1328 aaKnown RBP28.38■■■□□ 2.13
USP48-205ENST00000421625 RCAN3Q9UKA8 241 aa28.38■■■□□ 2.13
USP48-205ENST00000421625 BRD4O60885 1362 aaPredicted RBP28.37■■■□□ 2.13
USP48-205ENST00000421625 CAMSAP2Q08AD1 1489 aa28.37■■■□□ 2.13
USP48-205ENST00000421625 IL27Q8NEV9 243 aa28.37■■■□□ 2.13
USP48-205ENST00000421625 RALGAPBQ86X10 1494 aa28.36■■■□□ 2.13
USP48-205ENST00000421625 ST20-MTHFSA0A0A6YYL1 179 aa28.33■■■□□ 2.13
USP48-205ENST00000421625 ADGBQ8N7X0 1667 aa28.33■■■□□ 2.13
USP48-205ENST00000421625 UHRF1BP1Q6BDS2 1440 aa28.33■■■□□ 2.13
USP48-205ENST00000421625 BACH2Q9BYV9 841 aa28.33■■■□□ 2.12
USP48-205ENST00000421625 NEFMP07197 916 aa28.32■■■□□ 2.12
USP48-205ENST00000421625 CFDP1Q9UEE9 299 aaPredicted RBP28.32■■■□□ 2.12
USP48-205ENST00000421625 CARMIL2Q6F5E8 1435 aa28.32■■■□□ 2.12
USP48-205ENST00000421625 ZNF777Q9ULD5 760 aaPredicted RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms