RNA–Protein interactions for RNA: ENST00000420996.2

UPF3AP3-201, Transcript of UPF3A pseudogene 3, humanhuman

BASIC

Gene UPF3AP3, Length 769 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP3-201ENST00000420996 ARHGAP35Q9NRY4 1499 aa27.94■■■□□ 2.06
UPF3AP3-201ENST00000420996 SIGLEC1Q9BZZ2 1709 aa27.93■■■□□ 2.06
UPF3AP3-201ENST00000420996 CDK11AQ9UQ88 783 aaPredicted RBP27.92■■■□□ 2.06
UPF3AP3-201ENST00000420996 FBXO41Q8TF61 875 aa27.91■■■□□ 2.06
UPF3AP3-201ENST00000420996 MYO5CQ9NQX4 1742 aa27.9■■■□□ 2.06
UPF3AP3-201ENST00000420996 EFCAB2Q5VUJ9 269 aa27.9■■■□□ 2.06
UPF3AP3-201ENST00000420996 CHIC1Q5VXU3 224 aa27.86■■■□□ 2.05
UPF3AP3-201ENST00000420996 KIF14Q15058 1648 aa27.84■■■□□ 2.05
UPF3AP3-201ENST00000420996 ATP10AO60312 1499 aa27.83■■■□□ 2.05
UPF3AP3-201ENST00000420996 MLECQ14165 292 aa27.83■■■□□ 2.05
UPF3AP3-201ENST00000420996 FER1L4A9Z1Z3 1794 aa27.83■■■□□ 2.05
UPF3AP3-201ENST00000420996 TROQ12816 1431 aaPredicted RBP27.83■■■□□ 2.05
UPF3AP3-201ENST00000420996 PLPPR3Q6T4P5 718 aa27.82■■■□□ 2.04
UPF3AP3-201ENST00000420996 C9orf84Q5VXU9 1444 aa27.79■■■□□ 2.04
UPF3AP3-201ENST00000420996 LRRIQ1Q96JM4 1722 aa27.78■■■□□ 2.04
UPF3AP3-201ENST00000420996 CLIP1P30622 1438 aa27.78■■■□□ 2.04
UPF3AP3-201ENST00000420996 HSPA2P54652 639 aa27.78■■■□□ 2.04
UPF3AP3-201ENST00000420996 ZNF518AQ6AHZ1 1483 aa27.76■■■□□ 2.04
UPF3AP3-201ENST00000420996 ARHGAP5Q13017 1502 aa27.76■■■□□ 2.03
UPF3AP3-201ENST00000420996 ARHGEF12Q9NZN5 1544 aa27.76■■■□□ 2.03
UPF3AP3-201ENST00000420996 KDM5CP41229 1560 aa27.73■■■□□ 2.03
UPF3AP3-201ENST00000420996 AFAP1Q8N556 730 aa27.72■■■□□ 2.03
UPF3AP3-201ENST00000420996 CDC42BPBQ9Y5S2 1711 aa27.7■■■□□ 2.02
UPF3AP3-201ENST00000420996 CASKIN1Q8WXD9 1431 aa27.66■■■□□ 2.02
UPF3AP3-201ENST00000420996 CCDC18Q5T9S5 1454 aa27.65■■■□□ 2.02
UPF3AP3-201ENST00000420996 MYT1LQ9UL68 1186 aa27.64■■■□□ 2.02
UPF3AP3-201ENST00000420996 PREX1Q8TCU6 1659 aa27.64■■■□□ 2.02
UPF3AP3-201ENST00000420996 PREX2Q70Z35 1606 aa27.63■■■□□ 2.01
UPF3AP3-201ENST00000420996 DIP2CQ9Y2E4 1556 aa27.63■■■□□ 2.01
UPF3AP3-201ENST00000420996 REREQ9P2R6 1566 aa27.62■■■□□ 2.01
UPF3AP3-201ENST00000420996 CEBPAP49715 358 aaPredicted RBP27.62■■■□□ 2.01
UPF3AP3-201ENST00000420996 MLH3Q9UHC1 1453 aa27.62■■■□□ 2.01
UPF3AP3-201ENST00000420996 ABCC1P33527 1531 aa27.59■■■□□ 2.01
UPF3AP3-201ENST00000420996 ABCA6Q8N139 1617 aa27.58■■■□□ 2.01
UPF3AP3-201ENST00000420996 SETD1BQ9UPS6 1966 aaKnown RBP27.57■■■□□ 2
UPF3AP3-201ENST00000420996 TRAPPC8Q9Y2L5 1435 aa27.57■■■□□ 2
UPF3AP3-201ENST00000420996 ITSN2Q9NZM3 1697 aa27.56■■■□□ 2
UPF3AP3-201ENST00000420996 CERKQ8TCT0 537 aa27.55■■■□□ 2
UPF3AP3-201ENST00000420996 CDC42BPAQ5VT25 1732 aa27.55■■■□□ 2
UPF3AP3-201ENST00000420996 AGLP35573 1532 aa27.53■■■□□ 2
UPF3AP3-201ENST00000420996 FYCO1Q9BQS8 1478 aa27.53■■■□□ 2
UPF3AP3-201ENST00000420996 UHRF1BP1Q6BDS2 1440 aa27.5■■□□□ 1.99
UPF3AP3-201ENST00000420996 KIDINS220Q9ULH0 1771 aa27.5■■□□□ 1.99
UPF3AP3-201ENST00000420996 C3P01024 1663 aa27.49■■□□□ 1.99
UPF3AP3-201ENST00000420996 STRCQ7RTU9 1775 aa27.48■■□□□ 1.99
UPF3AP3-201ENST00000420996 ESF1Q9H501 851 aaKnown RBP27.47■■□□□ 1.99
UPF3AP3-201ENST00000420996 DMRT2Q9Y5R5 561 aa27.47■■□□□ 1.99
UPF3AP3-201ENST00000420996 SAMD9LQ8IVG5 1584 aa27.43■■□□□ 1.98
UPF3AP3-201ENST00000420996 ZNF777Q9ULD5 760 aaPredicted RBP27.42■■□□□ 1.98
UPF3AP3-201ENST00000420996 GPATCH8Q9UKJ3 1502 aaKnown RBP27.41■■□□□ 1.98
UPF3AP3-201ENST00000420996 CNTLNQ9NXG0 1405 aa27.4■■□□□ 1.98
UPF3AP3-201ENST00000420996 SYCP2Q9BX26 1530 aa27.38■■□□□ 1.97
UPF3AP3-201ENST00000420996 SPAG9O60271 1321 aaKnown RBP27.37■■□□□ 1.97
UPF3AP3-201ENST00000420996 HNRNPMP52272 730 aaKnown RBP eCLIP27.36■■□□□ 1.97
UPF3AP3-201ENST00000420996 PTPRTO14522 1441 aa27.34■■□□□ 1.97
UPF3AP3-201ENST00000420996 KIAA1107Q9UPP5 1409 aa27.34■■□□□ 1.97
UPF3AP3-201ENST00000420996 CFDP1Q9UEE9 299 aaPredicted RBP27.33■■□□□ 1.97
UPF3AP3-201ENST00000420996 MROH2AA6NES4 1674 aa27.33■■□□□ 1.97
UPF3AP3-201ENST00000420996 PLEKHH2Q8IVE3 1493 aa27.32■■□□□ 1.96
UPF3AP3-201ENST00000420996 SUPT6HQ7KZ85 1726 aaKnown RBP27.31■■□□□ 1.96
UPF3AP3-201ENST00000420996 CCNB3Q8WWL7 1395 aa27.31■■□□□ 1.96
UPF3AP3-201ENST00000420996 ATP7AQ04656 1500 aa27.3■■□□□ 1.96
UPF3AP3-201ENST00000420996 NPATQ14207 1427 aa27.29■■□□□ 1.96
UPF3AP3-201ENST00000420996 MTUS2Q5JR59 1369 aa27.28■■□□□ 1.96
UPF3AP3-201ENST00000420996 INO80Q9ULG1 1556 aaPredicted RBP27.27■■□□□ 1.96
UPF3AP3-201ENST00000420996 ZMYM3Q14202 1370 aa27.27■■□□□ 1.96
UPF3AP3-201ENST00000420996 PLXNC1O60486 1568 aa27.25■■□□□ 1.95
UPF3AP3-201ENST00000420996 A2MP01023 1474 aa27.25■■□□□ 1.95
UPF3AP3-201ENST00000420996 NCOA1Q15788 1441 aa27.24■■□□□ 1.95
UPF3AP3-201ENST00000420996 CLTCQ00610 1675 aaKnown RBP27.21■■□□□ 1.95
UPF3AP3-201ENST00000420996 CAMSAP1Q5T5Y3 1602 aa27.19■■□□□ 1.94
UPF3AP3-201ENST00000420996 TIAM1Q13009 1591 aa27.18■■□□□ 1.94
UPF3AP3-201ENST00000420996 ADGBQ8N7X0 1667 aa27.18■■□□□ 1.94
UPF3AP3-201ENST00000420996 LTBP4Q8N2S1 1624 aa27.18■■□□□ 1.94
UPF3AP3-201ENST00000420996 ZNF644Q9H582 1327 aaPredicted RBP27.16■■□□□ 1.94
UPF3AP3-201ENST00000420996 EHBP1L1Q8N3D4 1523 aa27.16■■□□□ 1.94
UPF3AP3-201ENST00000420996 GGT6Q6P531 493 aa27.16■■□□□ 1.94
UPF3AP3-201ENST00000420996 PPP6R1Q9UPN7 881 aa27.16■■□□□ 1.94
UPF3AP3-201ENST00000420996 MBD5Q9P267 1494 aa27.14■■□□□ 1.94
UPF3AP3-201ENST00000420996 PTPRKQ15262 1439 aa27.13■■□□□ 1.93
UPF3AP3-201ENST00000420996 ZNF142P52746 1687 aaPredicted RBP27.12■■□□□ 1.93
UPF3AP3-201ENST00000420996 CEP162Q5TB80 1403 aa27.12■■□□□ 1.93
UPF3AP3-201ENST00000420996 IQSEC2Q5JU85 1478 aa27.12■■□□□ 1.93
UPF3AP3-201ENST00000420996 MYO3AQ8NEV4 1616 aa27.12■■□□□ 1.93
UPF3AP3-201ENST00000420996 RTEL1-TNFRSF6BF6WH68 1400 aa27.11■■□□□ 1.93
UPF3AP3-201ENST00000420996 NCKAP5LQ9HCH0 1330 aa27.09■■□□□ 1.93
UPF3AP3-201ENST00000420996 PLA2R1Q13018 1463 aa27.07■■□□□ 1.92
UPF3AP3-201ENST00000420996 CEP170BQ9Y4F5 1589 aaPredicted RBP27.07■■□□□ 1.92
UPF3AP3-201ENST00000420996 PKD2Q13563 968 aa27.07■■□□□ 1.92
UPF3AP3-201ENST00000420996 DHX29Q7Z478 1369 aaKnown RBP27.06■■□□□ 1.92
UPF3AP3-201ENST00000420996 TCOF1Q13428 1488 aaKnown RBP27.02■■□□□ 1.92
UPF3AP3-201ENST00000420996 DISP3Q9P2K9 1392 aa27.02■■□□□ 1.92
UPF3AP3-201ENST00000420996 RSPH4AQ5TD94 716 aa27■■□□□ 1.91
UPF3AP3-201ENST00000420996 NCOA2Q15596 1464 aa27■■□□□ 1.91
UPF3AP3-201ENST00000420996 CCDC141Q6ZP82 1450 aa27■■□□□ 1.91
UPF3AP3-201ENST00000420996 ZNF335Q9H4Z2 1342 aaPredicted RBP26.99■■□□□ 1.91
UPF3AP3-201ENST00000420996 A2ML1A8K2U0 1454 aa26.98■■□□□ 1.91
UPF3AP3-201ENST00000420996 KIF3BO15066 747 aa26.97■■□□□ 1.91
UPF3AP3-201ENST00000420996 CAMSAP2Q08AD1 1489 aa26.97■■□□□ 1.91
UPF3AP3-201ENST00000420996 DNMT1P26358 1616 aaKnown RBP26.95■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms