RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 SENP3Q9H4L4 574 aaPredicted RBP11.25□□□□□ -0.61
UBR4-206ENST00000419533 MRS2Q9HD23 443 aa11.25□□□□□ -0.61
UBR4-206ENST00000419533 HSP90AA1P07900 732 aaKnown RBP11.24□□□□□ -0.61
UBR4-206ENST00000419533 KIF21BO75037 1637 aa11.24□□□□□ -0.61
UBR4-206ENST00000419533 THOC2Q8NI27 1593 aaKnown RBP11.24□□□□□ -0.61
UBR4-206ENST00000419533 PRXQ9BXM0 1461 aa11.22□□□□□ -0.61
UBR4-206ENST00000419533 PLEKHG5O94827 1062 aa11.22□□□□□ -0.61
UBR4-206ENST00000419533 CFAP53Q96M91 514 aa11.22□□□□□ -0.61
UBR4-206ENST00000419533 DNAJC5Q9H3Z4 198 aa11.22□□□□□ -0.61
UBR4-206ENST00000419533 MYH16Q9H6N6 1097 aa11.21□□□□□ -0.61
UBR4-206ENST00000419533 ANKRD30AQ9BXX3 1397 aa11.21□□□□□ -0.62
UBR4-206ENST00000419533 ADAMTS12P58397 1594 aa11.2□□□□□ -0.62
UBR4-206ENST00000419533 HNRNPMP52272 730 aaKnown RBP eCLIP11.19□□□□□ -0.62
UBR4-206ENST00000419533 PLB1Q6P1J6 1458 aa11.19□□□□□ -0.62
UBR4-206ENST00000419533 FKBP8Q14318 412 aa11.19□□□□□ -0.62
UBR4-206ENST00000419533 POGKQ9P215 609 aa11.19□□□□□ -0.62
UBR4-206ENST00000419533 KIF3BO15066 747 aa11.18□□□□□ -0.62
UBR4-206ENST00000419533 KNSTRNQ9Y448 316 aa11.17□□□□□ -0.62
UBR4-206ENST00000419533 POGZQ7Z3K3 1410 aa11.17□□□□□ -0.62
UBR4-206ENST00000419533 CARD11Q9BXL7 1154 aa11.16□□□□□ -0.62
UBR4-206ENST00000419533 CASKIN1Q8WXD9 1431 aa11.16□□□□□ -0.62
UBR4-206ENST00000419533 WASHC2CQ9Y4E1 1318 aa11.16□□□□□ -0.62
UBR4-206ENST00000419533 HECW1Q76N89 1606 aa11.16□□□□□ -0.62
UBR4-206ENST00000419533 CCDC136Q96JN2 1154 aa11.15□□□□□ -0.62
UBR4-206ENST00000419533 ANP32BQ92688 251 aaKnown RBP11.15□□□□□ -0.62
UBR4-206ENST00000419533 EID1Q9Y6B2 187 aa11.15□□□□□ -0.63
UBR4-206ENST00000419533 PBRM1Q86U86 1689 aa11.14□□□□□ -0.63
UBR4-206ENST00000419533 ARHGAP5Q13017 1502 aa11.14□□□□□ -0.63
UBR4-206ENST00000419533 PLEKHH2Q8IVE3 1493 aa11.14□□□□□ -0.63
UBR4-206ENST00000419533 TEX14Q8IWB6 1497 aa11.14□□□□□ -0.63
UBR4-206ENST00000419533 CD109Q6YHK3 1445 aa11.14□□□□□ -0.63
UBR4-206ENST00000419533 FYCO1Q9BQS8 1478 aa11.12□□□□□ -0.63
UBR4-206ENST00000419533 LMOD2Q6P5Q4 547 aa11.12□□□□□ -0.63
UBR4-206ENST00000419533 HIRIP3Q9BW71 556 aaPredicted RBP11.12□□□□□ -0.63
UBR4-206ENST00000419533 NUP160Q12769 1436 aa11.12□□□□□ -0.63
UBR4-206ENST00000419533 PPM1GO15355 546 aaPredicted RBP11.12□□□□□ -0.63
UBR4-206ENST00000419533 NUDCQ9Y266 331 aa11.11□□□□□ -0.63
UBR4-206ENST00000419533 TARBP1Q13395 1621 aaKnown RBP11.1□□□□□ -0.63
UBR4-206ENST00000419533 TROQ12816 1431 aaPredicted RBP11.09□□□□□ -0.63
UBR4-206ENST00000419533 MAPK8IP3Q9UPT6 1336 aa11.09□□□□□ -0.63
UBR4-206ENST00000419533 ABCA5Q8WWZ7 1642 aa11.09□□□□□ -0.63
UBR4-206ENST00000419533 KANK4Q5T7N3 995 aaPredicted RBP11.08□□□□□ -0.64
UBR4-206ENST00000419533 ARXQ96QS3 562 aa11.08□□□□□ -0.64
UBR4-206ENST00000419533 PHLDB1Q86UU1 1377 aa11.07□□□□□ -0.64
UBR4-206ENST00000419533 MYOM3Q5VTT5 1437 aa11.06□□□□□ -0.64
UBR4-206ENST00000419533 PNNQ9H307 717 aaKnown RBP11.05□□□□□ -0.64
UBR4-206ENST00000419533 ASXL2Q76L83 1435 aa11.05□□□□□ -0.64
UBR4-206ENST00000419533 TMF1P82094 1093 aa11.04□□□□□ -0.64
UBR4-206ENST00000419533 EHBP1L1Q8N3D4 1523 aa11.03□□□□□ -0.64
UBR4-206ENST00000419533 NUP155O75694 1391 aa11.03□□□□□ -0.64
UBR4-206ENST00000419533 SCAPERQ9BY12 1400 aa11.03□□□□□ -0.64
UBR4-206ENST00000419533 UGGT2Q9NYU1 1516 aa11.03□□□□□ -0.64
UBR4-206ENST00000419533 CEP170Q5SW79 1584 aa11.03□□□□□ -0.64
UBR4-206ENST00000419533 DCAF11Q8TEB1 546 aa11.03□□□□□ -0.64
UBR4-206ENST00000419533 NPHP1O15259 732 aa11.01□□□□□ -0.65
UBR4-206ENST00000419533 EPRSP07814 1512 aaKnown RBP11.01□□□□□ -0.65
UBR4-206ENST00000419533 EIF5BO60841 1220 aaKnown RBP11.01□□□□□ -0.65
UBR4-206ENST00000419533 KIF14Q15058 1648 aa11.01□□□□□ -0.65
UBR4-206ENST00000419533 AKNAQ7Z591 1439 aa11.01□□□□□ -0.65
UBR4-206ENST00000419533 ARHGEF11O15085 1522 aa11.01□□□□□ -0.65
UBR4-206ENST00000419533 WDR7Q9Y4E6 1490 aa11.01□□□□□ -0.65
UBR4-206ENST00000419533 SRPK2P78362 688 aaKnown RBP11.01□□□□□ -0.65
UBR4-206ENST00000419533 FTSJ3Q8IY81 847 aaKnown RBP11.01□□□□□ -0.65
UBR4-206ENST00000419533 LAS1LQ9Y4W2 734 aaKnown RBP11□□□□□ -0.65
UBR4-206ENST00000419533 DENND4BO75064 1496 aaPredicted RBP11□□□□□ -0.65
UBR4-206ENST00000419533 ABCC2Q92887 1545 aa11□□□□□ -0.65
UBR4-206ENST00000419533 RAPGEF3O95398 923 aa11□□□□□ -0.65
UBR4-206ENST00000419533 MIER1Q8N108 512 aa11□□□□□ -0.65
UBR4-206ENST00000419533 CHD1O14646 1710 aa11□□□□□ -0.65
UBR4-206ENST00000419533 CTTNBP2Q8WZ74 1663 aa11□□□□□ -0.65
UBR4-206ENST00000419533 AFAP1Q8N556 730 aa10.99□□□□□ -0.65
UBR4-206ENST00000419533 CHMP4BQ9H444 224 aaKnown RBP10.99□□□□□ -0.65
UBR4-206ENST00000419533 SIN3AQ96ST3 1273 aa10.99□□□□□ -0.65
UBR4-206ENST00000419533 CASC1Q6TDU7 716 aa10.99□□□□□ -0.65
UBR4-206ENST00000419533 NCOA2Q15596 1464 aa10.99□□□□□ -0.65
UBR4-206ENST00000419533 KIAA0556O60303 1618 aa10.99□□□□□ -0.65
UBR4-206ENST00000419533 NEUROD2Q15784 382 aa10.98□□□□□ -0.65
UBR4-206ENST00000419533 TIMELESSQ9UNS1 1208 aa10.98□□□□□ -0.65
UBR4-206ENST00000419533 ADGRL1O94910 1474 aa10.98□□□□□ -0.65
UBR4-206ENST00000419533 U2SURPO15042 1029 aaKnown RBP10.98□□□□□ -0.65
UBR4-206ENST00000419533 TNNT2P45379 298 aaPredicted RBP10.98□□□□□ -0.65
UBR4-206ENST00000419533 PKD2Q13563 968 aa10.98□□□□□ -0.65
UBR4-206ENST00000419533 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.97□□□□□ -0.65
UBR4-206ENST00000419533 ARAP1Q96P48 1450 aa10.97□□□□□ -0.65
UBR4-206ENST00000419533 ANP32EQ9BTT0 268 aa10.97□□□□□ -0.65
UBR4-206ENST00000419533 LRRC9Q6ZRR7 1453 aa10.97□□□□□ -0.65
UBR4-206ENST00000419533 RAPGEF6Q8TEU7 1601 aa10.97□□□□□ -0.65
UBR4-206ENST00000419533 SETD5Q9C0A6 1442 aa10.96□□□□□ -0.65
UBR4-206ENST00000419533 MS4A1P11836 297 aa10.96□□□□□ -0.66
UBR4-206ENST00000419533 CC2D1BQ5T0F9 858 aaKnown RBP10.96□□□□□ -0.66
UBR4-206ENST00000419533 CDK11BP21127 795 aaKnown RBP10.96□□□□□ -0.66
UBR4-206ENST00000419533 HDGFL2Q7Z4V5 671 aaPredicted RBP10.95□□□□□ -0.66
UBR4-206ENST00000419533 CDK13Q14004 1512 aaKnown RBP10.95□□□□□ -0.66
UBR4-206ENST00000419533 BECN1Q14457 450 aa10.95□□□□□ -0.66
UBR4-206ENST00000419533 KIF15Q9NS87 1388 aa10.95□□□□□ -0.66
UBR4-206ENST00000419533 FANCAO15360 1455 aa10.94□□□□□ -0.66
UBR4-206ENST00000419533 IRX6P78412 446 aaPredicted RBP10.94□□□□□ -0.66
UBR4-206ENST00000419533 MIA2Q96PC5 1412 aa10.94□□□□□ -0.66
UBR4-206ENST00000419533 NCLP19338 710 aaKnown RBP10.93□□□□□ -0.66
UBR4-206ENST00000419533 MORC1Q86VD1 984 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms