RNA–Protein interactions for RNA: ENST00000418518.2

LINCMD1-201, Transcript of long intergenic non-protein coding RNA, muscle differentiation 1, humanhuman

TSL 5 BASIC

Gene LINCMD1, Length 462 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINCMD1-201ENST00000418518 ABCC5O15440 1437 aa13.34□□□□□ -0.27
LINCMD1-201ENST00000418518 ADGRL2O95490 1459 aa13.34□□□□□ -0.27
LINCMD1-201ENST00000418518 ARHGEF5Q12774 1597 aa13.32□□□□□ -0.28
LINCMD1-201ENST00000418518 KDM6BO15054 1643 aa13.32□□□□□ -0.28
LINCMD1-201ENST00000418518 ZCCHC11Q5TAX3 1644 aaKnown RBP13.32□□□□□ -0.28
LINCMD1-201ENST00000418518 SHANK2Q9UPX8 1470 aa13.32□□□□□ -0.28
LINCMD1-201ENST00000418518 ARID3CA6NKF2 412 aa13.31□□□□□ -0.28
LINCMD1-201ENST00000418518 ACIN1Q9UKV3 1341 aaKnown RBP13.31□□□□□ -0.28
LINCMD1-201ENST00000418518 MYO5CQ9NQX4 1742 aa13.3□□□□□ -0.28
LINCMD1-201ENST00000418518 KDM5BQ9UGL1 1544 aa13.3□□□□□ -0.28
LINCMD1-201ENST00000418518 PLEKHD1A6NEE1 506 aa13.29□□□□□ -0.28
LINCMD1-201ENST00000418518 TTC37Q6PGP7 1564 aa13.28□□□□□ -0.28
LINCMD1-201ENST00000418518 ZNF316A6NFI3 1004 aaPredicted RBP13.27□□□□□ -0.29
LINCMD1-201ENST00000418518 SAMD9LQ8IVG5 1584 aa13.27□□□□□ -0.29
LINCMD1-201ENST00000418518 DENND4BO75064 1496 aaPredicted RBP13.26□□□□□ -0.29
LINCMD1-201ENST00000418518 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.26□□□□□ -0.29
LINCMD1-201ENST00000418518 TIMELESSQ9UNS1 1208 aa13.26□□□□□ -0.29
LINCMD1-201ENST00000418518 MAST1Q9Y2H9 1570 aa13.25□□□□□ -0.29
LINCMD1-201ENST00000418518 CFDP1Q9UEE9 299 aaPredicted RBP13.24□□□□□ -0.29
LINCMD1-201ENST00000418518 NCOA1Q15788 1441 aa13.23□□□□□ -0.29
LINCMD1-201ENST00000418518 ZNF644Q9H582 1327 aaPredicted RBP13.23□□□□□ -0.29
LINCMD1-201ENST00000418518 ARAP3Q8WWN8 1544 aa13.23□□□□□ -0.29
LINCMD1-201ENST00000418518 MBD5Q9P267 1494 aa13.22□□□□□ -0.29
LINCMD1-201ENST00000418518 KDM5DQ9BY66 1539 aa13.2□□□□□ -0.3
LINCMD1-201ENST00000418518 RRP7BPQ9NSQ0 103 aa13.2□□□□□ -0.3
LINCMD1-201ENST00000418518 PLEKHH2Q8IVE3 1493 aa13.2□□□□□ -0.3
LINCMD1-201ENST00000418518 CCDC141Q6ZP82 1450 aa13.19□□□□□ -0.3
LINCMD1-201ENST00000418518 C9orf84Q5VXU9 1444 aa13.19□□□□□ -0.3
LINCMD1-201ENST00000418518 PLXNC1O60486 1568 aa13.19□□□□□ -0.3
LINCMD1-201ENST00000418518 CHIC2Q9UKJ5 165 aa13.18□□□□□ -0.3
LINCMD1-201ENST00000418518 ANKRD30AQ9BXX3 1397 aa13.18□□□□□ -0.3
LINCMD1-201ENST00000418518 KIAA1107Q9UPP5 1409 aa13.17□□□□□ -0.3
LINCMD1-201ENST00000418518 ABCA9Q8IUA7 1624 aa13.17□□□□□ -0.3
LINCMD1-201ENST00000418518 PZPP20742 1482 aa13.16□□□□□ -0.3
LINCMD1-201ENST00000418518 DIEXFQ68CQ4 756 aaKnown RBP13.16□□□□□ -0.3
LINCMD1-201ENST00000418518 ARHGAP5Q13017 1502 aa13.16□□□□□ -0.3
LINCMD1-201ENST00000418518 SYCP2Q9BX26 1530 aa13.16□□□□□ -0.3
LINCMD1-201ENST00000418518 ABCC1P33527 1531 aa13.15□□□□□ -0.3
LINCMD1-201ENST00000418518 PLCH2O75038 1416 aa13.14□□□□□ -0.31
LINCMD1-201ENST00000418518 SIN3AQ96ST3 1273 aa13.14□□□□□ -0.31
LINCMD1-201ENST00000418518 WDR7Q9Y4E6 1490 aa13.14□□□□□ -0.31
LINCMD1-201ENST00000418518 RSPH4AQ5TD94 716 aa13.13□□□□□ -0.31
LINCMD1-201ENST00000418518 UNC13BO14795 1591 aa13.12□□□□□ -0.31
LINCMD1-201ENST00000418518 ANKRD50Q9ULJ7 1429 aa13.12□□□□□ -0.31
LINCMD1-201ENST00000418518 ANKRD30BQ9BXX2 1392 aa13.11□□□□□ -0.31
LINCMD1-201ENST00000418518 PPP1R15AO75807 674 aaPredicted RBP13.1□□□□□ -0.31
LINCMD1-201ENST00000418518 MPHOSPH9Q99550 1183 aa13.1□□□□□ -0.31
LINCMD1-201ENST00000418518 ZNF777Q9ULD5 760 aaPredicted RBP13.1□□□□□ -0.31
LINCMD1-201ENST00000418518 RPRD2Q5VT52 1461 aaKnown RBP13.1□□□□□ -0.31
LINCMD1-201ENST00000418518 TONSLQ96HA7 1378 aa13.09□□□□□ -0.31
LINCMD1-201ENST00000418518 OSCARQ8IYS5 282 aa13.09□□□□□ -0.31
LINCMD1-201ENST00000418518 ARHGEF12Q9NZN5 1544 aa13.08□□□□□ -0.31
LINCMD1-201ENST00000418518 TEX14Q8IWB6 1497 aa13.08□□□□□ -0.32
LINCMD1-201ENST00000418518 KIF15Q9NS87 1388 aa13.07□□□□□ -0.32
LINCMD1-201ENST00000418518 IQGAP3Q86VI3 1631 aa13.06□□□□□ -0.32
LINCMD1-201ENST00000418518 MAGI2Q86UL8 1455 aa13.06□□□□□ -0.32
LINCMD1-201ENST00000418518 NEUROD1Q13562 356 aa13.06□□□□□ -0.32
LINCMD1-201ENST00000418518 TRIM52Q96A61 297 aa13.06□□□□□ -0.32
LINCMD1-201ENST00000418518 DUOX2Q9NRD8 1548 aa13.06□□□□□ -0.32
LINCMD1-201ENST00000418518 INO80Q9ULG1 1556 aaPredicted RBP13.05□□□□□ -0.32
LINCMD1-201ENST00000418518 CFAP74Q9C0B2 1584 aa13.04□□□□□ -0.32
LINCMD1-201ENST00000418518 TSPY4P0CV99 314 aa13.04□□□□□ -0.32
LINCMD1-201ENST00000418518 TSPY10P0CW01 314 aa13.04□□□□□ -0.32
LINCMD1-201ENST00000418518 HNRNPMP52272 730 aaKnown RBP eCLIP13.04□□□□□ -0.32
LINCMD1-201ENST00000418518 ASXL2Q76L83 1435 aa13.04□□□□□ -0.32
LINCMD1-201ENST00000418518 ZFYVE16Q7Z3T8 1539 aa13.03□□□□□ -0.32
LINCMD1-201ENST00000418518 RTEL1-TNFRSF6BF6WH68 1400 aa13.03□□□□□ -0.32
LINCMD1-201ENST00000418518 ERBINQ96RT1 1412 aa13.03□□□□□ -0.32
LINCMD1-201ENST00000418518 EFCAB2Q5VUJ9 269 aa13.02□□□□□ -0.33
LINCMD1-201ENST00000418518 FAM135AQ9P2D6 1515 aa13.02□□□□□ -0.33
LINCMD1-201ENST00000418518 DEPDC5O75140 1603 aa13.02□□□□□ -0.33
LINCMD1-201ENST00000418518 SLC4A1APQ9BWU0 796 aaKnown RBP13□□□□□ -0.33
LINCMD1-201ENST00000418518 POLR1AO95602 1720 aaPredicted RBP12.99□□□□□ -0.33
LINCMD1-201ENST00000418518 EIF2AK4Q9P2K8 1649 aaKnown RBP12.99□□□□□ -0.33
LINCMD1-201ENST00000418518 FANCAO15360 1455 aa12.99□□□□□ -0.33
LINCMD1-201ENST00000418518 TRAPPC8Q9Y2L5 1435 aa12.99□□□□□ -0.33
LINCMD1-201ENST00000418518 KCNH8Q96L42 1107 aa12.98□□□□□ -0.33
LINCMD1-201ENST00000418518 ATP7AQ04656 1500 aa12.98□□□□□ -0.33
LINCMD1-201ENST00000418518 NUP155O75694 1391 aa12.97□□□□□ -0.33
LINCMD1-201ENST00000418518 ATP10AO60312 1499 aa12.95□□□□□ -0.34
LINCMD1-201ENST00000418518 KDM5CP41229 1560 aa12.94□□□□□ -0.34
LINCMD1-201ENST00000418518 VWDEQ8N2E2 1590 aa12.94□□□□□ -0.34
LINCMD1-201ENST00000418518 KIDINS220Q9ULH0 1771 aa12.94□□□□□ -0.34
LINCMD1-201ENST00000418518 ADGRL1O94910 1474 aa12.94□□□□□ -0.34
LINCMD1-201ENST00000418518 FOXD1Q16676 465 aa12.94□□□□□ -0.34
LINCMD1-201ENST00000418518 BCORL1Q5H9F3 1711 aa12.93□□□□□ -0.34
LINCMD1-201ENST00000418518 RIMBP3CA6NJZ7 1639 aa12.93□□□□□ -0.34
LINCMD1-201ENST00000418518 RIMBP3BA6NNM3 1639 aa12.93□□□□□ -0.34
LINCMD1-201ENST00000418518 RIMBP3Q9UFD9 1639 aa12.93□□□□□ -0.34
LINCMD1-201ENST00000418518 PKD2Q13563 968 aa12.93□□□□□ -0.34
LINCMD1-201ENST00000418518 L3MBTL2Q969R5 705 aa12.93□□□□□ -0.34
LINCMD1-201ENST00000418518 UHRF1BP1Q6BDS2 1440 aa12.93□□□□□ -0.34
LINCMD1-201ENST00000418518 MAP3K4Q9Y6R4 1608 aa12.92□□□□□ -0.34
LINCMD1-201ENST00000418518 GLI2P10070 1586 aa12.92□□□□□ -0.34
LINCMD1-201ENST00000418518 MIER1Q8N108 512 aa12.92□□□□□ -0.34
LINCMD1-201ENST00000418518 TET3O43151 1660 aa12.92□□□□□ -0.34
LINCMD1-201ENST00000418518 PRDM15P57071 1507 aaPredicted RBP12.91□□□□□ -0.34
LINCMD1-201ENST00000418518 RNF17Q9BXT8 1623 aaKnown RBP12.91□□□□□ -0.34
LINCMD1-201ENST00000418518 E9PCH4 1651 aa12.9□□□□□ -0.34
LINCMD1-201ENST00000418518 MROH1Q8NDA8 1641 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms