RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 MAP3K4Q9Y6R4 1608 aa13.04□□□□□ -0.32
TRIM48-201ENST00000417545 CD109Q6YHK3 1445 aa13.03□□□□□ -0.32
TRIM48-201ENST00000417545 ARHGAP5Q13017 1502 aa13.03□□□□□ -0.32
TRIM48-201ENST00000417545 CFAP74Q9C0B2 1584 aa13.03□□□□□ -0.32
TRIM48-201ENST00000417545 PREX2Q70Z35 1606 aa13.03□□□□□ -0.32
TRIM48-201ENST00000417545 CDC42BPAQ5VT25 1732 aa13.03□□□□□ -0.32
TRIM48-201ENST00000417545 TEX14Q8IWB6 1497 aa13.01□□□□□ -0.33
TRIM48-201ENST00000417545 MAPK8IP2Q13387 824 aaPredicted RBP13□□□□□ -0.33
TRIM48-201ENST00000417545 ZNF777Q9ULD5 760 aaPredicted RBP12.99□□□□□ -0.33
TRIM48-201ENST00000417545 CDC42BPBQ9Y5S2 1711 aa12.99□□□□□ -0.33
TRIM48-201ENST00000417545 MYOM3Q5VTT5 1437 aa12.99□□□□□ -0.33
TRIM48-201ENST00000417545 CFDP1Q9UEE9 299 aaPredicted RBP12.98□□□□□ -0.33
TRIM48-201ENST00000417545 FANCAO15360 1455 aa12.97□□□□□ -0.33
TRIM48-201ENST00000417545 PLCH2O75038 1416 aa12.97□□□□□ -0.33
TRIM48-201ENST00000417545 EFCAB2Q5VUJ9 269 aa12.96□□□□□ -0.33
TRIM48-201ENST00000417545 ARAP3Q8WWN8 1544 aa12.96□□□□□ -0.33
TRIM48-201ENST00000417545 GPATCH8Q9UKJ3 1502 aaKnown RBP12.96□□□□□ -0.33
TRIM48-201ENST00000417545 PHLDB1Q86UU1 1377 aa12.95□□□□□ -0.34
TRIM48-201ENST00000417545 PPRC1Q5VV67 1664 aaKnown RBP12.95□□□□□ -0.34
TRIM48-201ENST00000417545 PTPN23Q9H3S7 1636 aa12.94□□□□□ -0.34
TRIM48-201ENST00000417545 DMRT2Q9Y5R5 561 aa12.94□□□□□ -0.34
TRIM48-201ENST00000417545 NEO1Q92859 1461 aa12.93□□□□□ -0.34
TRIM48-201ENST00000417545 FAM50AQ14320 339 aaKnown RBP12.93□□□□□ -0.34
TRIM48-201ENST00000417545 FGD6Q6ZV73 1430 aa12.93□□□□□ -0.34
TRIM48-201ENST00000417545 MIA2Q96PC5 1412 aa12.93□□□□□ -0.34
TRIM48-201ENST00000417545 PLEKHH2Q8IVE3 1493 aa12.92□□□□□ -0.34
TRIM48-201ENST00000417545 ADGRL1O94910 1474 aa12.92□□□□□ -0.34
TRIM48-201ENST00000417545 CAMSAP2Q08AD1 1489 aa12.92□□□□□ -0.34
TRIM48-201ENST00000417545 SAMD9LQ8IVG5 1584 aa12.91□□□□□ -0.34
TRIM48-201ENST00000417545 AKNAQ7Z591 1439 aa12.91□□□□□ -0.34
TRIM48-201ENST00000417545 ABCC1P33527 1531 aa12.9□□□□□ -0.34
TRIM48-201ENST00000417545 SYCP2Q9BX26 1530 aa12.9□□□□□ -0.34
TRIM48-201ENST00000417545 KDM6BO15054 1643 aa12.9□□□□□ -0.34
TRIM48-201ENST00000417545 MYT1LQ9UL68 1186 aa12.89□□□□□ -0.35
TRIM48-201ENST00000417545 SCAPERQ9BY12 1400 aa12.87□□□□□ -0.35
TRIM48-201ENST00000417545 DENND4BO75064 1496 aaPredicted RBP12.87□□□□□ -0.35
TRIM48-201ENST00000417545 TCOF1Q13428 1488 aaKnown RBP12.86□□□□□ -0.35
TRIM48-201ENST00000417545 ZNF644Q9H582 1327 aaPredicted RBP12.85□□□□□ -0.35
TRIM48-201ENST00000417545 ITGAEP38570 1179 aa12.85□□□□□ -0.35
TRIM48-201ENST00000417545 HNRNPMP52272 730 aaKnown RBP eCLIP12.85□□□□□ -0.35
TRIM48-201ENST00000417545 CACNB1Q02641 598 aaPredicted RBP12.85□□□□□ -0.35
TRIM48-201ENST00000417545 ZNF518AQ6AHZ1 1483 aa12.85□□□□□ -0.35
TRIM48-201ENST00000417545 RRBP1Q9P2E9 1410 aaKnown RBP12.84□□□□□ -0.35
TRIM48-201ENST00000417545 CCDC141Q6ZP82 1450 aa12.84□□□□□ -0.35
TRIM48-201ENST00000417545 ARHGEF5Q12774 1597 aa12.83□□□□□ -0.35
TRIM48-201ENST00000417545 DNMT1P26358 1616 aaKnown RBP12.83□□□□□ -0.36
TRIM48-201ENST00000417545 KIAA1107Q9UPP5 1409 aa12.83□□□□□ -0.36
TRIM48-201ENST00000417545 CROCC2H7BZ55 1655 aa12.83□□□□□ -0.36
TRIM48-201ENST00000417545 POGZQ7Z3K3 1410 aa12.82□□□□□ -0.36
TRIM48-201ENST00000417545 RICTORQ6R327 1708 aa12.82□□□□□ -0.36
TRIM48-201ENST00000417545 TSPY4P0CV99 314 aa12.82□□□□□ -0.36
TRIM48-201ENST00000417545 TSPY10P0CW01 314 aa12.82□□□□□ -0.36
TRIM48-201ENST00000417545 RSPH4AQ5TD94 716 aa12.81□□□□□ -0.36
TRIM48-201ENST00000417545 HECW2Q9P2P5 1572 aa12.81□□□□□ -0.36
TRIM48-201ENST00000417545 ADGBQ8N7X0 1667 aa12.8□□□□□ -0.36
TRIM48-201ENST00000417545 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.8□□□□□ -0.36
TRIM48-201ENST00000417545 DAPK1P53355 1430 aa12.8□□□□□ -0.36
TRIM48-201ENST00000417545 ARHGEF12Q9NZN5 1544 aa12.8□□□□□ -0.36
TRIM48-201ENST00000417545 RAPGEF3O95398 923 aa12.79□□□□□ -0.36
TRIM48-201ENST00000417545 SPAG9O60271 1321 aaKnown RBP12.79□□□□□ -0.36
TRIM48-201ENST00000417545 TRAPPC8Q9Y2L5 1435 aa12.79□□□□□ -0.36
TRIM48-201ENST00000417545 AFAP1Q8N556 730 aa12.79□□□□□ -0.36
TRIM48-201ENST00000417545 FRMPD1Q5SYB0 1578 aa12.78□□□□□ -0.36
TRIM48-201ENST00000417545 KDM5CP41229 1560 aa12.78□□□□□ -0.36
TRIM48-201ENST00000417545 MBD5Q9P267 1494 aa12.78□□□□□ -0.36
TRIM48-201ENST00000417545 ATP7AQ04656 1500 aa12.77□□□□□ -0.37
TRIM48-201ENST00000417545 SHANK2Q9UPX8 1470 aa12.77□□□□□ -0.37
TRIM48-201ENST00000417545 C9orf84Q5VXU9 1444 aa12.77□□□□□ -0.37
TRIM48-201ENST00000417545 TRIM26Q12899 539 aaPredicted RBP12.77□□□□□ -0.37
TRIM48-201ENST00000417545 CHIC2Q9UKJ5 165 aa12.77□□□□□ -0.37
TRIM48-201ENST00000417545 ZMYM4Q5VZL5 1548 aa12.76□□□□□ -0.37
TRIM48-201ENST00000417545 ZFYVE16Q7Z3T8 1539 aa12.76□□□□□ -0.37
TRIM48-201ENST00000417545 ABCC5O15440 1437 aa12.76□□□□□ -0.37
TRIM48-201ENST00000417545 INO80Q9ULG1 1556 aaPredicted RBP12.76□□□□□ -0.37
TRIM48-201ENST00000417545 MAST1Q9Y2H9 1570 aa12.76□□□□□ -0.37
TRIM48-201ENST00000417545 ANKRD30AQ9BXX3 1397 aa12.74□□□□□ -0.37
TRIM48-201ENST00000417545 MAGI2Q86UL8 1455 aa12.74□□□□□ -0.37
TRIM48-201ENST00000417545 COL17A1Q9UMD9 1497 aaPredicted RBP12.74□□□□□ -0.37
TRIM48-201ENST00000417545 KIDINS220Q9ULH0 1771 aa12.73□□□□□ -0.37
TRIM48-201ENST00000417545 MLH3Q9UHC1 1453 aa12.73□□□□□ -0.37
TRIM48-201ENST00000417545 PLXNC1O60486 1568 aa12.73□□□□□ -0.37
TRIM48-201ENST00000417545 ARHGEF40Q8TER5 1519 aa12.72□□□□□ -0.37
TRIM48-201ENST00000417545 RTEL1-TNFRSF6BF6WH68 1400 aa12.72□□□□□ -0.37
TRIM48-201ENST00000417545 ABCA6Q8N139 1617 aa12.72□□□□□ -0.37
TRIM48-201ENST00000417545 DIP2CQ9Y2E4 1556 aa12.7□□□□□ -0.38
TRIM48-201ENST00000417545 SCAF1Q9H7N4 1312 aaKnown RBP12.7□□□□□ -0.38
TRIM48-201ENST00000417545 RRP7BPQ9NSQ0 103 aa12.7□□□□□ -0.38
TRIM48-201ENST00000417545 KIF15Q9NS87 1388 aa12.69□□□□□ -0.38
TRIM48-201ENST00000417545 ADGRL2O95490 1459 aa12.69□□□□□ -0.38
TRIM48-201ENST00000417545 YEATS2Q9ULM3 1422 aa12.69□□□□□ -0.38
TRIM48-201ENST00000417545 GCC2Q8IWJ2 1684 aa12.69□□□□□ -0.38
TRIM48-201ENST00000417545 DUOX2Q9NRD8 1548 aa12.68□□□□□ -0.38
TRIM48-201ENST00000417545 ROCK1Q13464 1354 aa12.68□□□□□ -0.38
TRIM48-201ENST00000417545 ATP10AO60312 1499 aa12.68□□□□□ -0.38
TRIM48-201ENST00000417545 ARID4BQ4LE39 1312 aaPredicted RBP12.67□□□□□ -0.38
TRIM48-201ENST00000417545 PTPRKQ15262 1439 aa12.67□□□□□ -0.38
TRIM48-201ENST00000417545 A2MP01023 1474 aa12.67□□□□□ -0.38
TRIM48-201ENST00000417545 NCOA1Q15788 1441 aa12.66□□□□□ -0.38
TRIM48-201ENST00000417545 PCGF6Q9BYE7 350 aa12.64□□□□□ -0.39
TRIM48-201ENST00000417545 EIF2AK4Q9P2K8 1649 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms