RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 LAS1LQ9Y4W2 734 aaKnown RBP19.99■□□□□ 0.79
NCKIPSD-204ENST00000416649 CFAP43Q8NDM7 1665 aa19.98■□□□□ 0.79
NCKIPSD-204ENST00000416649 MAP3K1Q13233 1512 aa19.97■□□□□ 0.79
NCKIPSD-204ENST00000416649 EIF5BO60841 1220 aaKnown RBP19.97■□□□□ 0.79
NCKIPSD-204ENST00000416649 MRS2Q9HD23 443 aa19.97■□□□□ 0.79
NCKIPSD-204ENST00000416649 LRRIQ1Q96JM4 1722 aa19.97■□□□□ 0.79
NCKIPSD-204ENST00000416649 KIAA0586Q9BVV6 1533 aa19.96■□□□□ 0.79
NCKIPSD-204ENST00000416649 RRP7BPQ9NSQ0 103 aa19.95■□□□□ 0.78
NCKIPSD-204ENST00000416649 SYNJ2O15056 1496 aa19.94■□□□□ 0.78
NCKIPSD-204ENST00000416649 NCOA2Q15596 1464 aa19.94■□□□□ 0.78
NCKIPSD-204ENST00000416649 NEFMP07197 916 aa19.93■□□□□ 0.78
NCKIPSD-204ENST00000416649 MAGI3Q5TCQ9 1506 aa19.93■□□□□ 0.78
NCKIPSD-204ENST00000416649 FGD6Q6ZV73 1430 aa19.92■□□□□ 0.78
NCKIPSD-204ENST00000416649 DISP1Q96F81 1524 aa19.92■□□□□ 0.78
NCKIPSD-204ENST00000416649 MAGI1Q96QZ7 1491 aaPredicted RBP19.91■□□□□ 0.78
NCKIPSD-204ENST00000416649 CEP170Q5SW79 1584 aa19.91■□□□□ 0.78
NCKIPSD-204ENST00000416649 ZNF777Q9ULD5 760 aaPredicted RBP19.91■□□□□ 0.78
NCKIPSD-204ENST00000416649 WASHC2AQ641Q2 1341 aa19.9■□□□□ 0.78
NCKIPSD-204ENST00000416649 EPRSP07814 1512 aaKnown RBP19.89■□□□□ 0.78
NCKIPSD-204ENST00000416649 PLB1Q6P1J6 1458 aa19.89■□□□□ 0.77
NCKIPSD-204ENST00000416649 ZNF644Q9H582 1327 aaPredicted RBP19.88■□□□□ 0.77
NCKIPSD-204ENST00000416649 HSPA5P11021 654 aaKnown RBP19.88■□□□□ 0.77
NCKIPSD-204ENST00000416649 POLR3GLQ9BT43 218 aa19.87■□□□□ 0.77
NCKIPSD-204ENST00000416649 UBE2Q2Q8WVN8 375 aa19.86■□□□□ 0.77
NCKIPSD-204ENST00000416649 ZBED9Q6R2W3 1325 aa19.86■□□□□ 0.77
NCKIPSD-204ENST00000416649 PTPRKQ15262 1439 aa19.86■□□□□ 0.77
NCKIPSD-204ENST00000416649 UGGT2Q9NYU1 1516 aa19.85■□□□□ 0.77
NCKIPSD-204ENST00000416649 AKNAQ7Z591 1439 aa19.84■□□□□ 0.77
NCKIPSD-204ENST00000416649 KIAA0556O60303 1618 aa19.84■□□□□ 0.77
NCKIPSD-204ENST00000416649 FOXD1Q16676 465 aa19.84■□□□□ 0.77
NCKIPSD-204ENST00000416649 MYOM3Q5VTT5 1437 aa19.84■□□□□ 0.77
NCKIPSD-204ENST00000416649 BRPF3Q9ULD4 1205 aa19.82■□□□□ 0.76
NCKIPSD-204ENST00000416649 PRKRIP1Q9H875 184 aaPredicted RBP19.81■□□□□ 0.76
NCKIPSD-204ENST00000416649 HECW1Q76N89 1606 aa19.81■□□□□ 0.76
NCKIPSD-204ENST00000416649 PRG4Q92954 1404 aaPredicted RBP19.8■□□□□ 0.76
NCKIPSD-204ENST00000416649 NUP153P49790 1475 aaKnown RBP19.8■□□□□ 0.76
NCKIPSD-204ENST00000416649 CCDC18Q5T9S5 1454 aa19.78■□□□□ 0.76
NCKIPSD-204ENST00000416649 CARMIL2Q6F5E8 1435 aa19.78■□□□□ 0.76
NCKIPSD-204ENST00000416649 EHBP1L1Q8N3D4 1523 aa19.77■□□□□ 0.76
NCKIPSD-204ENST00000416649 SUPT6HQ7KZ85 1726 aaKnown RBP19.77■□□□□ 0.76
NCKIPSD-204ENST00000416649 EIF4G2P78344 907 aaKnown RBP eCLIP19.77■□□□□ 0.76
NCKIPSD-204ENST00000416649 NUP160Q12769 1436 aa19.76■□□□□ 0.75
NCKIPSD-204ENST00000416649 CFDP1Q9UEE9 299 aaPredicted RBP19.73■□□□□ 0.75
NCKIPSD-204ENST00000416649 C11orf95C9JLR9 678 aaPredicted RBP19.72■□□□□ 0.75
NCKIPSD-204ENST00000416649 CNTLNQ9NXG0 1405 aa19.72■□□□□ 0.75
NCKIPSD-204ENST00000416649 PLEKHD1A6NEE1 506 aa19.71■□□□□ 0.75
NCKIPSD-204ENST00000416649 RAPGEF6Q8TEU7 1601 aa19.71■□□□□ 0.75
NCKIPSD-204ENST00000416649 PTPN23Q9H3S7 1636 aa19.7■□□□□ 0.74
NCKIPSD-204ENST00000416649 USP35Q9P2H5 1018 aa19.69■□□□□ 0.74
NCKIPSD-204ENST00000416649 NUDCQ9Y266 331 aa19.69■□□□□ 0.74
NCKIPSD-204ENST00000416649 PTPRGP23470 1445 aa19.68■□□□□ 0.74
NCKIPSD-204ENST00000416649 PPM1GO15355 546 aaPredicted RBP19.67■□□□□ 0.74
NCKIPSD-204ENST00000416649 ZNF326Q5BKZ1 582 aaKnown RBP19.65■□□□□ 0.74
NCKIPSD-204ENST00000416649 WASHC2CQ9Y4E1 1318 aa19.65■□□□□ 0.74
NCKIPSD-204ENST00000416649 CHD1O14646 1710 aa19.65■□□□□ 0.74
NCKIPSD-204ENST00000416649 PDE4AP27815 886 aa19.65■□□□□ 0.74
NCKIPSD-204ENST00000416649 NAIPQ13075 1403 aa19.65■□□□□ 0.74
NCKIPSD-204ENST00000416649 GSE1Q14687 1217 aa19.63■□□□□ 0.73
NCKIPSD-204ENST00000416649 SMG6Q86US8 1419 aaKnown RBP19.62■□□□□ 0.73
NCKIPSD-204ENST00000416649 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.62■□□□□ 0.73
NCKIPSD-204ENST00000416649 UACAQ9BZF9 1416 aa19.61■□□□□ 0.73
NCKIPSD-204ENST00000416649 ERCC6L2Q5T890 1561 aa19.61■□□□□ 0.73
NCKIPSD-204ENST00000416649 CCDC7Q96M83 1385 aa19.61■□□□□ 0.73
NCKIPSD-204ENST00000416649 HFM1A2PYH4 1435 aa19.6■□□□□ 0.73
NCKIPSD-204ENST00000416649 ARHGEF11O15085 1522 aa19.6■□□□□ 0.73
NCKIPSD-204ENST00000416649 TROQ12816 1431 aaPredicted RBP19.59■□□□□ 0.73
NCKIPSD-204ENST00000416649 SLC4A3P48751 1232 aa19.59■□□□□ 0.73
NCKIPSD-204ENST00000416649 KIF14Q15058 1648 aa19.58■□□□□ 0.73
NCKIPSD-204ENST00000416649 ATP10BO94823 1461 aa19.58■□□□□ 0.73
NCKIPSD-204ENST00000416649 EXOC6Q8TAG9 804 aa19.58■□□□□ 0.73
NCKIPSD-204ENST00000416649 TCERG1O14776 1098 aaKnown RBP19.57■□□□□ 0.72
NCKIPSD-204ENST00000416649 HNRNPMP52272 730 aaKnown RBP eCLIP19.57■□□□□ 0.729e-7■■■□□ 18.8
NCKIPSD-204ENST00000416649 FRAT1Q92837 279 aaPredicted RBP19.57■□□□□ 0.72
NCKIPSD-204ENST00000416649 L3MBTL2Q969R5 705 aa19.55■□□□□ 0.72
NCKIPSD-204ENST00000416649 BACH2Q9BYV9 841 aa19.55■□□□□ 0.72
NCKIPSD-204ENST00000416649 DAXXQ9UER7 740 aaPredicted RBP19.55■□□□□ 0.72
NCKIPSD-204ENST00000416649 NFKBIBQ15653 356 aa19.54■□□□□ 0.72
NCKIPSD-204ENST00000416649 SKAP1Q86WV1 359 aa19.54■□□□□ 0.72
NCKIPSD-204ENST00000416649 KDM6BO15054 1643 aa19.54■□□□□ 0.72
NCKIPSD-204ENST00000416649 RNF123Q5XPI4 1314 aa19.53■□□□□ 0.72
NCKIPSD-204ENST00000416649 ABCC5O15440 1437 aa19.52■□□□□ 0.72
NCKIPSD-204ENST00000416649 MIA2Q96PC5 1412 aa19.52■□□□□ 0.72
NCKIPSD-204ENST00000416649 KIF7Q2M1P5 1343 aa19.52■□□□□ 0.72
NCKIPSD-204ENST00000416649 KDM5BQ9UGL1 1544 aa19.52■□□□□ 0.72
NCKIPSD-204ENST00000416649 DAPK1P53355 1430 aa19.52■□□□□ 0.71
NCKIPSD-204ENST00000416649 MPHOSPH9Q99550 1183 aa19.52■□□□□ 0.71
NCKIPSD-204ENST00000416649 GPATCH8Q9UKJ3 1502 aaKnown RBP19.51■□□□□ 0.71
NCKIPSD-204ENST00000416649 SLC4A1APQ9BWU0 796 aaKnown RBP19.5■□□□□ 0.71
NCKIPSD-204ENST00000416649 TCOF1Q13428 1488 aaKnown RBP19.5■□□□□ 0.71
NCKIPSD-204ENST00000416649 NCOA1Q15788 1441 aa19.49■□□□□ 0.71
NCKIPSD-204ENST00000416649 TMC1Q8TDI8 760 aa19.48■□□□□ 0.71
NCKIPSD-204ENST00000416649 CAMSAP2Q08AD1 1489 aa19.47■□□□□ 0.71
NCKIPSD-204ENST00000416649 ABCA8O94911 1581 aa19.47■□□□□ 0.71
NCKIPSD-204ENST00000416649 RRP1P56182 461 aaKnown RBP19.46■□□□□ 0.71
NCKIPSD-204ENST00000416649 DDRGK1Q96HY6 314 aa19.46■□□□□ 0.71
NCKIPSD-204ENST00000416649 PKNOX2Q96KN3 472 aa19.45■□□□□ 0.7
NCKIPSD-204ENST00000416649 NBPF8Q3BBV2 869 aa19.44■□□□□ 0.7
NCKIPSD-204ENST00000416649 TSPY4P0CV99 314 aa19.43■□□□□ 0.7
NCKIPSD-204ENST00000416649 TSPY10P0CW01 314 aa19.43■□□□□ 0.7
NCKIPSD-204ENST00000416649 RSPH6AQ9H0K4 717 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms