RNA–Protein interactions for RNA: ENST00000416123.6

COL12A1-203, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5 BASIC

Gene COL12A1, Length 8,964 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-203ENST00000416123 KCNJ4P48050 445 aa13.71□□□□□ -0.22
COL12A1-203ENST00000416123 ROCK2O75116 1388 aaKnown RBP13.71□□□□□ -0.22
COL12A1-203ENST00000416123 FGD1P98174 961 aa13.7□□□□□ -0.22
COL12A1-203ENST00000416123 HSPA5P11021 654 aaKnown RBP13.7□□□□□ -0.22
COL12A1-203ENST00000416123 ZNF330Q9Y3S2 320 aaPredicted RBP13.7□□□□□ -0.22
COL12A1-203ENST00000416123 TRIM44Q96DX7 344 aaPredicted RBP13.7□□□□□ -0.22
COL12A1-203ENST00000416123 RTF1Q92541 710 aaKnown RBP13.69□□□□□ -0.22
COL12A1-203ENST00000416123 APBB1O00213 710 aa13.69□□□□□ -0.22
COL12A1-203ENST00000416123 SPRYD3Q8NCJ5 442 aa13.67□□□□□ -0.22
COL12A1-203ENST00000416123 HSP90AB1P08238 724 aaKnown RBP13.67□□□□□ -0.22
COL12A1-203ENST00000416123 NUP155O75694 1391 aa13.67□□□□□ -0.22
COL12A1-203ENST00000416123 NUTM2FA1L443 756 aa13.66□□□□□ -0.22
COL12A1-203ENST00000416123 CSB-PGBD3P0DP91 1061 aa13.66□□□□□ -0.22
COL12A1-203ENST00000416123 PTMAP06454 111 aaKnown RBP13.66□□□□□ -0.22
COL12A1-203ENST00000416123 TOP2AP11388 1531 aaKnown RBP13.66□□□□□ -0.22
COL12A1-203ENST00000416123 PLCB2Q00722 1185 aa13.66□□□□□ -0.22
COL12A1-203ENST00000416123 HDGFL2Q7Z4V5 671 aaPredicted RBP13.66□□□□□ -0.22
COL12A1-203ENST00000416123 KIF3BO15066 747 aa13.66□□□□□ -0.22
COL12A1-203ENST00000416123 MPHOSPH9Q99550 1183 aa13.65□□□□□ -0.22
COL12A1-203ENST00000416123 VPS8Q8N3P4 1428 aa13.65□□□□□ -0.22
COL12A1-203ENST00000416123 CCDC9Q9Y3X0 531 aaKnown RBP13.64□□□□□ -0.23
COL12A1-203ENST00000416123 FHOD3Q2V2M9 1422 aa13.64□□□□□ -0.23
COL12A1-203ENST00000416123 PPP4R2Q9NY27 417 aa13.63□□□□□ -0.23
COL12A1-203ENST00000416123 RAB3GAP2Q9H2M9 1393 aa13.63□□□□□ -0.23
COL12A1-203ENST00000416123 ISY1Q9ULR0 285 aaKnown RBP13.63□□□□□ -0.23
COL12A1-203ENST00000416123 EFCAB2Q5VUJ9 269 aa13.61□□□□□ -0.23
COL12A1-203ENST00000416123 FMN1Q68DA7 1419 aa13.61□□□□□ -0.23
COL12A1-203ENST00000416123 U2AF1L5P0DN76 240 aaPredicted RBP13.61□□□□□ -0.23
COL12A1-203ENST00000416123 U2AF1Q01081 240 aaKnown RBP eCLIP13.61□□□□□ -0.23
COL12A1-203ENST00000416123 DNTTIP2Q5QJE6 756 aaKnown RBP13.61□□□□□ -0.23
COL12A1-203ENST00000416123 KTN1Q86UP2 1357 aaKnown RBP13.61□□□□□ -0.23
COL12A1-203ENST00000416123 SMARCA4P51532 1647 aa13.6□□□□□ -0.23
COL12A1-203ENST00000416123 WASHC2CQ9Y4E1 1318 aa13.59□□□□□ -0.23
COL12A1-203ENST00000416123 MS4A1P11836 297 aa13.59□□□□□ -0.23
COL12A1-203ENST00000416123 ANKRD30AQ9BXX3 1397 aa13.58□□□□□ -0.23
COL12A1-203ENST00000416123 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.58□□□□□ -0.24
COL12A1-203ENST00000416123 CHMP4BQ9H444 224 aaKnown RBP13.58□□□□□ -0.24
COL12A1-203ENST00000416123 LTV1Q96GA3 475 aaPredicted RBP13.58□□□□□ -0.24
COL12A1-203ENST00000416123 CCDC146Q8IYE0 955 aa13.57□□□□□ -0.24
COL12A1-203ENST00000416123 SPAG9O60271 1321 aaKnown RBP13.56□□□□□ -0.24
COL12A1-203ENST00000416123 RAPGEF2Q9Y4G8 1499 aa13.56□□□□□ -0.24
COL12A1-203ENST00000416123 CHMP3Q9Y3E7 222 aa13.55□□□□□ -0.24
COL12A1-203ENST00000416123 ITPRIPQ8IWB1 547 aa13.54□□□□□ -0.24
COL12A1-203ENST00000416123 EID1Q9Y6B2 187 aa13.54□□□□□ -0.24
COL12A1-203ENST00000416123 NCBP3Q53F19 620 aaKnown RBP13.54□□□□□ -0.24
COL12A1-203ENST00000416123 NGDNQ8NEJ9 315 aaKnown RBP13.54□□□□□ -0.24
COL12A1-203ENST00000416123 JPH4Q96JJ6 628 aa13.54□□□□□ -0.24
COL12A1-203ENST00000416123 CYB5RLQ6IPT4 315 aa13.54□□□□□ -0.24
COL12A1-203ENST00000416123 CLSTN1O94985 981 aa13.54□□□□□ -0.24
COL12A1-203ENST00000416123 TRAK1Q9UPV9 953 aa13.53□□□□□ -0.24
COL12A1-203ENST00000416123 CCDC18Q5T9S5 1454 aa13.53□□□□□ -0.24
COL12A1-203ENST00000416123 ANP32EQ9BTT0 268 aa13.53□□□□□ -0.24
COL12A1-203ENST00000416123 RTN4Q9NQC3 1192 aaKnown RBP13.52□□□□□ -0.24
COL12A1-203ENST00000416123 HSCBQ8IWL3 235 aa13.52□□□□□ -0.25
COL12A1-203ENST00000416123 AMER1Q5JTC6 1135 aaPredicted RBP13.51□□□□□ -0.25
COL12A1-203ENST00000416123 GLIPR1L2Q4G1C9 344 aa13.51□□□□□ -0.25
COL12A1-203ENST00000416123 CADPSQ9ULU8 1353 aa13.51□□□□□ -0.25
COL12A1-203ENST00000416123 NOP58Q9Y2X3 529 aaKnown RBP13.51□□□□□ -0.25
COL12A1-203ENST00000416123 EIF3AQ14152 1382 aaKnown RBP13.5□□□□□ -0.25
COL12A1-203ENST00000416123 RUSC2Q8N2Y8 1516 aa13.5□□□□□ -0.25
COL12A1-203ENST00000416123 FANCD2Q9BXW9 1451 aa13.5□□□□□ -0.25
COL12A1-203ENST00000416123 MCCP23508 829 aa13.49□□□□□ -0.25
COL12A1-203ENST00000416123 SLC4A10Q6U841 1118 aa13.49□□□□□ -0.25
COL12A1-203ENST00000416123 AMPHP49418 695 aa13.49□□□□□ -0.25
COL12A1-203ENST00000416123 GOLGA6L4A6NEF3 574 aa13.49□□□□□ -0.25
COL12A1-203ENST00000416123 L3MBTL2Q969R5 705 aa13.48□□□□□ -0.25
COL12A1-203ENST00000416123 GNL2Q13823 731 aaKnown RBP13.48□□□□□ -0.25
COL12A1-203ENST00000416123 RCAN3Q9UKA8 241 aa13.48□□□□□ -0.25
COL12A1-203ENST00000416123 IPO8O15397 1037 aaKnown RBP13.47□□□□□ -0.25
COL12A1-203ENST00000416123 KIAA1211Q6ZU35 1233 aa13.46□□□□□ -0.25
COL12A1-203ENST00000416123 TAF7LQ5H9L4 462 aa13.46□□□□□ -0.25
COL12A1-203ENST00000416123 TERF2IPQ9NYB0 399 aa13.46□□□□□ -0.25
COL12A1-203ENST00000416123 SMC4Q9NTJ3 1288 aa13.46□□□□□ -0.26
COL12A1-203ENST00000416123 ATAD2BQ9ULI0 1458 aa13.46□□□□□ -0.26
COL12A1-203ENST00000416123 RRP7AQ9Y3A4 280 aaKnown RBP13.45□□□□□ -0.26
COL12A1-203ENST00000416123 CLUAP1Q96AJ1 413 aa13.45□□□□□ -0.26
COL12A1-203ENST00000416123 GORABQ5T7V8 394 aa13.44□□□□□ -0.26
COL12A1-203ENST00000416123 CCER2I3L3R5 266 aa13.44□□□□□ -0.26
COL12A1-203ENST00000416123 RALBP1Q15311 655 aa13.44□□□□□ -0.26
COL12A1-203ENST00000416123 TRIM6-TRIM34B2RNG4 842 aa13.44□□□□□ -0.26
COL12A1-203ENST00000416123 CALD1Q05682 793 aaKnown RBP13.44□□□□□ -0.26
COL12A1-203ENST00000416123 STK31Q9BXU1 1019 aa13.43□□□□□ -0.26
COL12A1-203ENST00000416123 TIMELESSQ9UNS1 1208 aa13.43□□□□□ -0.26
COL12A1-203ENST00000416123 NAP1L5Q96NT1 182 aaPredicted RBP13.42□□□□□ -0.26
COL12A1-203ENST00000416123 TMX4Q9H1E5 349 aaPredicted RBP13.42□□□□□ -0.26
COL12A1-203ENST00000416123 DRC7Q8IY82 874 aa13.42□□□□□ -0.26
COL12A1-203ENST00000416123 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.42□□□□□ -0.26
COL12A1-203ENST00000416123 GOLGA6L6A8MZA4 724 aa13.41□□□□□ -0.26
COL12A1-203ENST00000416123 G3V3G9 751 aa13.41□□□□□ -0.26
COL12A1-203ENST00000416123 DCAF8Q5TAQ9 597 aa13.41□□□□□ -0.26
COL12A1-203ENST00000416123 EVA1CP58658 441 aa13.4□□□□□ -0.26
COL12A1-203ENST00000416123 CCDC144AA2RUR9 1427 aa13.4□□□□□ -0.26
COL12A1-203ENST00000416123 NOL8Q76FK4 1167 aaKnown RBP13.39□□□□□ -0.27
COL12A1-203ENST00000416123 MINK1Q8N4C8 1332 aaPredicted RBP13.38□□□□□ -0.27
COL12A1-203ENST00000416123 MFAP1P55081 439 aaKnown RBP13.38□□□□□ -0.27
COL12A1-203ENST00000416123 NGEFQ8N5V2 710 aa13.38□□□□□ -0.27
COL12A1-203ENST00000416123 PANK3Q9H999 370 aa13.38□□□□□ -0.27
COL12A1-203ENST00000416123 ST20-MTHFSA0A0A6YYL1 179 aa13.38□□□□□ -0.27
COL12A1-203ENST00000416123 RAD54L2Q9Y4B4 1467 aa13.38□□□□□ -0.27
COL12A1-203ENST00000416123 PTPRGP23470 1445 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms