RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CEP164Q9UPV0 1460 aa4.42□□□□□ -1.7
MCF2-204ENST00000414978 C1QBPQ07021 282 aaKnown RBP4.42□□□□□ -1.7
MCF2-204ENST00000414978 CHADLQ6NUI6 762 aa4.42□□□□□ -1.7
MCF2-204ENST00000414978 RBM26Q5T8P6 1007 aaKnown RBP4.41□□□□□ -1.7
MCF2-204ENST00000414978 APBB1O00213 710 aa4.4□□□□□ -1.71
MCF2-204ENST00000414978 KIF13AQ9H1H9 1805 aa4.4□□□□□ -1.71
MCF2-204ENST00000414978 EIF4G3O43432 1585 aaKnown RBP4.4□□□□□ -1.71
MCF2-204ENST00000414978 ERCC6L2Q5T890 1561 aa4.4□□□□□ -1.71
MCF2-204ENST00000414978 E2F4Q16254 413 aa4.39□□□□□ -1.71
MCF2-204ENST00000414978 LARP6Q9BRS8 491 aaKnown RBP4.39□□□□□ -1.71
MCF2-204ENST00000414978 CADPSQ9ULU8 1353 aa4.39□□□□□ -1.71
MCF2-204ENST00000414978 IFT140Q96RY7 1462 aa4.39□□□□□ -1.71
MCF2-204ENST00000414978 ZMYND10O75800 440 aa4.39□□□□□ -1.71
MCF2-204ENST00000414978 CABP2Q9NPB3 220 aa4.38□□□□□ -1.71
MCF2-204ENST00000414978 RYDENQ9NUL5 291 aaKnown RBP4.38□□□□□ -1.71
MCF2-204ENST00000414978 MFRPQ9BY79 579 aa4.37□□□□□ -1.71
MCF2-204ENST00000414978 TARBP1Q13395 1621 aaKnown RBP4.37□□□□□ -1.71
MCF2-204ENST00000414978 URB2Q14146 1524 aaKnown RBP4.37□□□□□ -1.71
MCF2-204ENST00000414978 MLLT3P42568 568 aaPredicted RBP4.37□□□□□ -1.71
MCF2-204ENST00000414978 CREBZFQ9NS37 354 aa4.37□□□□□ -1.71
MCF2-204ENST00000414978 PHF8Q9UPP1 1060 aa4.36□□□□□ -1.71
MCF2-204ENST00000414978 CFTRP13569 1480 aa4.36□□□□□ -1.71
MCF2-204ENST00000414978 MKRN3Q13064 507 aaKnown RBP4.36□□□□□ -1.71
MCF2-204ENST00000414978 EFCAB3Q8N7B9 438 aa4.36□□□□□ -1.71
MCF2-204ENST00000414978 ABCC8Q09428 1581 aa4.36□□□□□ -1.71
MCF2-204ENST00000414978 ZMYND15Q9H091 742 aa4.35□□□□□ -1.71
MCF2-204ENST00000414978 FANCD2Q9BXW9 1451 aa4.35□□□□□ -1.71
MCF2-204ENST00000414978 KDM4CQ9H3R0 1056 aa4.35□□□□□ -1.71
MCF2-204ENST00000414978 IGSF5Q9NSI5 407 aa4.35□□□□□ -1.71
MCF2-204ENST00000414978 MNX1P50219 401 aaPredicted RBP4.34□□□□□ -1.71
MCF2-204ENST00000414978 FAM117AQ9C073 453 aa4.34□□□□□ -1.71
MCF2-204ENST00000414978 RSPH6AQ9H0K4 717 aa4.34□□□□□ -1.71
MCF2-204ENST00000414978 SYNJ1O43426 1573 aa4.34□□□□□ -1.71
MCF2-204ENST00000414978 SPDYE1Q8NFV5 336 aaPredicted RBP4.34□□□□□ -1.72
MCF2-204ENST00000414978 GPIHBP1Q8IV16 184 aa4.33□□□□□ -1.72
MCF2-204ENST00000414978 PSEN1P49768 467 aa4.33□□□□□ -1.72
MCF2-204ENST00000414978 SHROOM2Q13796 1616 aa4.33□□□□□ -1.72
MCF2-204ENST00000414978 DNMBPQ6XZF7 1577 aa4.33□□□□□ -1.72
MCF2-204ENST00000414978 ARHGEF1Q92888 912 aaKnown RBP4.33□□□□□ -1.72
MCF2-204ENST00000414978 TESPA1A2RU30 521 aaPredicted RBP4.32□□□□□ -1.72
MCF2-204ENST00000414978 CLUAP1Q96AJ1 413 aa4.32□□□□□ -1.72
MCF2-204ENST00000414978 ZNF316A6NFI3 1004 aaPredicted RBP4.32□□□□□ -1.72
MCF2-204ENST00000414978 PDAP1Q13442 181 aaKnown RBP4.32□□□□□ -1.72
MCF2-204ENST00000414978 NCKAP5LQ9HCH0 1330 aa4.31□□□□□ -1.72
MCF2-204ENST00000414978 AEBP1Q8IUX7 1158 aa4.31□□□□□ -1.72
MCF2-204ENST00000414978 GRXCR2A6NFK2 248 aa4.3□□□□□ -1.72
MCF2-204ENST00000414978 PBRM1Q86U86 1689 aa4.3□□□□□ -1.72
MCF2-204ENST00000414978 NUTM2FA1L443 756 aa4.3□□□□□ -1.72
MCF2-204ENST00000414978 DPYSL4O14531 572 aa4.3□□□□□ -1.72
MCF2-204ENST00000414978 TTLL12Q14166 644 aaPredicted RBP4.3□□□□□ -1.72
MCF2-204ENST00000414978 CCDC82Q8N4S0 544 aa4.3□□□□□ -1.72
MCF2-204ENST00000414978 SGIP1Q9BQI5 828 aa4.3□□□□□ -1.72
MCF2-204ENST00000414978 PDE4DQ08499 809 aa4.29□□□□□ -1.72
MCF2-204ENST00000414978 ZNF467Q7Z7K2 595 aaPredicted RBP4.29□□□□□ -1.72
MCF2-204ENST00000414978 FNBP4Q8N3X1 1017 aaPredicted RBP4.29□□□□□ -1.72
MCF2-204ENST00000414978 MROH2BQ7Z745 1585 aa4.29□□□□□ -1.72
MCF2-204ENST00000414978 PLEKHG3A1L390 1219 aa4.29□□□□□ -1.72
MCF2-204ENST00000414978 DDX27Q96GQ7 796 aaKnown RBP4.29□□□□□ -1.72
MCF2-204ENST00000414978 GPR37O15354 613 aa4.29□□□□□ -1.72
MCF2-204ENST00000414978 PDIA4P13667 645 aaKnown RBP4.29□□□□□ -1.72
MCF2-204ENST00000414978 IFNL1Q8IU54 200 aa4.29□□□□□ -1.72
MCF2-204ENST00000414978 ZNF428Q96B54 188 aa4.29□□□□□ -1.72
MCF2-204ENST00000414978 AK7Q96M32 723 aa4.29□□□□□ -1.72
MCF2-204ENST00000414978 TOP2AP11388 1531 aaKnown RBP4.29□□□□□ -1.72
MCF2-204ENST00000414978 MAGI1Q96QZ7 1491 aaPredicted RBP4.28□□□□□ -1.72
MCF2-204ENST00000414978 CACNB1Q02641 598 aaPredicted RBP4.28□□□□□ -1.72
MCF2-204ENST00000414978 ZNF777Q9ULD5 760 aaPredicted RBP4.28□□□□□ -1.72
MCF2-204ENST00000414978 TOPBP1Q92547 1522 aa4.28□□□□□ -1.72
MCF2-204ENST00000414978 SMYD5Q6GMV2 418 aa4.28□□□□□ -1.72
MCF2-204ENST00000414978 REM2Q8IYK8 340 aaPredicted RBP4.27□□□□□ -1.73
MCF2-204ENST00000414978 MAPKBP1O60336 1514 aa4.27□□□□□ -1.73
MCF2-204ENST00000414978 BARGINQ6ZT62 677 aa4.27□□□□□ -1.73
MCF2-204ENST00000414978 ZNF608Q9ULD9 1512 aaPredicted RBP4.27□□□□□ -1.73
MCF2-204ENST00000414978 ZBTB7CA1YPR0 619 aa4.27□□□□□ -1.73
MCF2-204ENST00000414978 TRIM66O15016 1216 aa4.27□□□□□ -1.73
MCF2-204ENST00000414978 GOLGA2Q08379 1002 aa4.27□□□□□ -1.73
MCF2-204ENST00000414978 MAP3K13O43283 966 aa4.26□□□□□ -1.73
MCF2-204ENST00000414978 NLRP7Q8WX94 980 aa4.26□□□□□ -1.73
MCF2-204ENST00000414978 TRAIPQ9BWF2 469 aa4.26□□□□□ -1.73
MCF2-204ENST00000414978 WIZO95785 1651 aa4.26□□□□□ -1.73
MCF2-204ENST00000414978 PITPNM1O00562 1244 aa4.26□□□□□ -1.73
MCF2-204ENST00000414978 UPF1Q92900 1129 aaKnown RBP eCLIP4.26□□□□□ -1.73
MCF2-204ENST00000414978 CHRM1P11229 460 aaPredicted RBP4.25□□□□□ -1.73
MCF2-204ENST00000414978 DIP2BQ9P265 1576 aa4.25□□□□□ -1.73
MCF2-204ENST00000414978 FECHP22830 423 aa4.25□□□□□ -1.73
MCF2-204ENST00000414978 NLRP6P59044 892 aa4.24□□□□□ -1.73
MCF2-204ENST00000414978 ILDR1Q86SU0 546 aaPredicted RBP4.24□□□□□ -1.73
MCF2-204ENST00000414978 ARIH1Q9Y4X5 557 aaPredicted RBP4.24□□□□□ -1.73
MCF2-204ENST00000414978 PPRC1Q5VV67 1664 aaKnown RBP4.24□□□□□ -1.73
MCF2-204ENST00000414978 DDX12PQ92771 950 aa4.24□□□□□ -1.73
MCF2-204ENST00000414978 ABCA5Q8WWZ7 1642 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 KCTD17Q8N5Z5 321 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 FBXO22Q8NEZ5 403 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 KDM6BO15054 1643 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 GLI2P10070 1586 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 HECW2Q9P2P5 1572 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 PDE4AP27815 886 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 IRF5Q13568 498 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 CCDC102AQ96A19 550 aa4.23□□□□□ -1.73
MCF2-204ENST00000414978 RAD21O60216 631 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms