RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 MIA2Q96PC5 1412 aa11.79□□□□□ -0.52
SYNE1-211ENST00000413186 PHLDB1Q86UU1 1377 aa11.79□□□□□ -0.52
SYNE1-211ENST00000413186 MAP3K1Q13233 1512 aa11.79□□□□□ -0.52
SYNE1-211ENST00000413186 PLB1Q6P1J6 1458 aa11.79□□□□□ -0.52
SYNE1-211ENST00000413186 CNGB1Q14028 1251 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-211ENST00000413186 RGL3Q3MIN7 710 aa11.79□□□□□ -0.52
SYNE1-211ENST00000413186 CTTNBP2Q8WZ74 1663 aa11.79□□□□□ -0.52
SYNE1-211ENST00000413186 HDGFP51858 240 aaKnown RBP11.78□□□□□ -0.52
SYNE1-211ENST00000413186 ANP32CO43423 234 aa11.78□□□□□ -0.52
SYNE1-211ENST00000413186 PKD2Q13563 968 aa11.78□□□□□ -0.52
SYNE1-211ENST00000413186 ARHGAP5Q13017 1502 aa11.78□□□□□ -0.52
SYNE1-211ENST00000413186 MPHOSPH9Q99550 1183 aa11.77□□□□□ -0.53
SYNE1-211ENST00000413186 PCF11O94913 1555 aaKnown RBP11.77□□□□□ -0.53
SYNE1-211ENST00000413186 EIF4G2P78344 907 aaKnown RBP eCLIP11.75□□□□□ -0.53
SYNE1-211ENST00000413186 CDK13Q14004 1512 aaKnown RBP11.75□□□□□ -0.53
SYNE1-211ENST00000413186 SUPT6HQ7KZ85 1726 aaKnown RBP11.74□□□□□ -0.53
SYNE1-211ENST00000413186 DAXXQ9UER7 740 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-211ENST00000413186 WASHC2CQ9Y4E1 1318 aa11.74□□□□□ -0.53
SYNE1-211ENST00000413186 ZNF644Q9H582 1327 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-211ENST00000413186 RRBP1Q9P2E9 1410 aaKnown RBP11.73□□□□□ -0.53
SYNE1-211ENST00000413186 KIAA0556O60303 1618 aa11.72□□□□□ -0.53
SYNE1-211ENST00000413186 SIN3AQ96ST3 1273 aa11.72□□□□□ -0.53
SYNE1-211ENST00000413186 KIF15Q9NS87 1388 aa11.71□□□□□ -0.53
SYNE1-211ENST00000413186 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.71□□□□□ -0.54
SYNE1-211ENST00000413186 RAPGEF6Q8TEU7 1601 aa11.7□□□□□ -0.54
SYNE1-211ENST00000413186 SLC24A1O60721 1099 aa11.7□□□□□ -0.54
SYNE1-211ENST00000413186 KIF14Q15058 1648 aa11.69□□□□□ -0.54
SYNE1-211ENST00000413186 CDCA8Q53HL2 280 aa11.69□□□□□ -0.54
SYNE1-211ENST00000413186 AFAP1Q8N556 730 aa11.68□□□□□ -0.54
SYNE1-211ENST00000413186 CD109Q6YHK3 1445 aa11.68□□□□□ -0.54
SYNE1-211ENST00000413186 DCAF11Q8TEB1 546 aa11.67□□□□□ -0.54
SYNE1-211ENST00000413186 CARD11Q9BXL7 1154 aa11.67□□□□□ -0.54
SYNE1-211ENST00000413186 ANKRD50Q9ULJ7 1429 aa11.67□□□□□ -0.54
SYNE1-211ENST00000413186 ATP10BO94823 1461 aa11.66□□□□□ -0.54
SYNE1-211ENST00000413186 SCAPERQ9BY12 1400 aa11.65□□□□□ -0.54
SYNE1-211ENST00000413186 CEP170Q5SW79 1584 aa11.65□□□□□ -0.54
SYNE1-211ENST00000413186 ARHGEF11O15085 1522 aa11.65□□□□□ -0.54
SYNE1-211ENST00000413186 DISP1Q96F81 1524 aa11.65□□□□□ -0.54
SYNE1-211ENST00000413186 C9orf84Q5VXU9 1444 aa11.65□□□□□ -0.55
SYNE1-211ENST00000413186 NUP153P49790 1475 aaKnown RBP11.65□□□□□ -0.55
SYNE1-211ENST00000413186 FOXD1Q16676 465 aa11.64□□□□□ -0.55
SYNE1-211ENST00000413186 NEFMP07197 916 aa11.62□□□□□ -0.55
SYNE1-211ENST00000413186 EIF5BO60841 1220 aaKnown RBP11.62□□□□□ -0.55
SYNE1-211ENST00000413186 CCDC144AA2RUR9 1427 aa11.62□□□□□ -0.55
SYNE1-211ENST00000413186 ABCC2Q92887 1545 aa11.61□□□□□ -0.55
SYNE1-211ENST00000413186 DDX10Q13206 875 aaKnown RBP11.61□□□□□ -0.55
SYNE1-211ENST00000413186 ASXL2Q76L83 1435 aa11.61□□□□□ -0.55
SYNE1-211ENST00000413186 C14orf37Q86TY3 774 aa11.61□□□□□ -0.55
SYNE1-211ENST00000413186 DAPK1P53355 1430 aa11.61□□□□□ -0.55
SYNE1-211ENST00000413186 CCDC141Q6ZP82 1450 aa11.61□□□□□ -0.55
SYNE1-211ENST00000413186 POGKQ9P215 609 aa11.61□□□□□ -0.55
SYNE1-211ENST00000413186 DHX57Q6P158 1386 aaKnown RBP11.6□□□□□ -0.55
SYNE1-211ENST00000413186 SAMD9Q5K651 1589 aa11.6□□□□□ -0.55
SYNE1-211ENST00000413186 ROCK1Q13464 1354 aa11.59□□□□□ -0.55
SYNE1-211ENST00000413186 WDR7Q9Y4E6 1490 aa11.59□□□□□ -0.55
SYNE1-211ENST00000413186 EID1Q9Y6B2 187 aa11.59□□□□□ -0.55
SYNE1-211ENST00000413186 ADGRL1O94910 1474 aa11.59□□□□□ -0.55
SYNE1-211ENST00000413186 HFM1A2PYH4 1435 aa11.58□□□□□ -0.56
SYNE1-211ENST00000413186 CAMSAP2Q08AD1 1489 aa11.58□□□□□ -0.56
SYNE1-211ENST00000413186 RAPGEF3O95398 923 aa11.58□□□□□ -0.56
SYNE1-211ENST00000413186 SENP3Q9H4L4 574 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-211ENST00000413186 STAC3Q96MF2 364 aa11.57□□□□□ -0.56
SYNE1-211ENST00000413186 FANCAO15360 1455 aa11.57□□□□□ -0.56
SYNE1-211ENST00000413186 PLCH2O75038 1416 aa11.56□□□□□ -0.56
SYNE1-211ENST00000413186 TEX14Q8IWB6 1497 aa11.56□□□□□ -0.56
SYNE1-211ENST00000413186 PTPN23Q9H3S7 1636 aa11.56□□□□□ -0.56
SYNE1-211ENST00000413186 CHD1O14646 1710 aa11.56□□□□□ -0.56
SYNE1-211ENST00000413186 GPATCH8Q9UKJ3 1502 aaKnown RBP11.55□□□□□ -0.56
SYNE1-211ENST00000413186 POGZQ7Z3K3 1410 aa11.55□□□□□ -0.56
SYNE1-211ENST00000413186 L3MBTL2Q969R5 705 aa11.55□□□□□ -0.56
SYNE1-211ENST00000413186 DENND4BO75064 1496 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-211ENST00000413186 TMC1Q8TDI8 760 aa11.54□□□□□ -0.56
SYNE1-211ENST00000413186 TMF1P82094 1093 aa11.54□□□□□ -0.56
SYNE1-211ENST00000413186 VGFO15240 615 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-211ENST00000413186 RTL5Q5HYW3 569 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-211ENST00000413186 HIRIP3Q9BW71 556 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-211ENST00000413186 AKNAQ7Z591 1439 aa11.53□□□□□ -0.56
SYNE1-211ENST00000413186 ABCC5O15440 1437 aa11.52□□□□□ -0.56
SYNE1-211ENST00000413186 ITSN2Q9NZM3 1697 aa11.52□□□□□ -0.57
SYNE1-211ENST00000413186 ROCK2O75116 1388 aaKnown RBP11.51□□□□□ -0.57
SYNE1-211ENST00000413186 EIF3AQ14152 1382 aaKnown RBP11.51□□□□□ -0.57
SYNE1-211ENST00000413186 UHRF1BP1LA0JNW5 1464 aa11.51□□□□□ -0.57
SYNE1-211ENST00000413186 KIAA1107Q9UPP5 1409 aa11.5□□□□□ -0.57
SYNE1-211ENST00000413186 CFAP43Q8NDM7 1665 aa11.5□□□□□ -0.57
SYNE1-211ENST00000413186 KNSTRNQ9Y448 316 aa11.5□□□□□ -0.57
SYNE1-211ENST00000413186 GLIPR1L2Q4G1C9 344 aa11.5□□□□□ -0.57
SYNE1-211ENST00000413186 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.49□□□□□ -0.57
SYNE1-211ENST00000413186 NAIPQ13075 1403 aa11.49□□□□□ -0.57
SYNE1-211ENST00000413186 NCOA1Q15788 1441 aa11.48□□□□□ -0.57
SYNE1-211ENST00000413186 PPP6R1Q9UPN7 881 aa11.47□□□□□ -0.57
SYNE1-211ENST00000413186 SLC52A1Q9NWF4 448 aa11.47□□□□□ -0.57
SYNE1-211ENST00000413186 STK26Q9P289 416 aa11.47□□□□□ -0.57
SYNE1-211ENST00000413186 ABCA8O94911 1581 aa11.46□□□□□ -0.57
SYNE1-211ENST00000413186 HSPA5P11021 654 aaKnown RBP11.46□□□□□ -0.57
SYNE1-211ENST00000413186 ZNF518AQ6AHZ1 1483 aa11.45□□□□□ -0.58
SYNE1-211ENST00000413186 SRPK2P78362 688 aaKnown RBP11.45□□□□□ -0.58
SYNE1-211ENST00000413186 WDR43Q15061 677 aaKnown RBP eCLIP11.44□□□□□ -0.58
SYNE1-211ENST00000413186 DHX29Q7Z478 1369 aaKnown RBP11.44□□□□□ -0.58
SYNE1-211ENST00000413186 KDM5BQ9UGL1 1544 aa11.44□□□□□ -0.58
SYNE1-211ENST00000413186 MRS2Q9HD23 443 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms