RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 GCC2Q8IWJ2 1684 aa19.77■□□□□ 0.75
LIMS1-205ENST00000410093 ITSN2Q9NZM3 1697 aa19.75■□□□□ 0.75
LIMS1-205ENST00000410093 TROQ12816 1431 aaPredicted RBP19.73■□□□□ 0.75
LIMS1-205ENST00000410093 ZCCHC11Q5TAX3 1644 aaKnown RBP19.73■□□□□ 0.75
LIMS1-205ENST00000410093 NAIPQ13075 1403 aa19.72■□□□□ 0.75
LIMS1-205ENST00000410093 ABCA8O94911 1581 aa19.72■□□□□ 0.75
LIMS1-205ENST00000410093 TSPOAP1O95153 1857 aa19.71■□□□□ 0.75
LIMS1-205ENST00000410093 PTPRKQ15262 1439 aa19.7■□□□□ 0.74
LIMS1-205ENST00000410093 ROCK1Q13464 1354 aa19.68■□□□□ 0.74
LIMS1-205ENST00000410093 GLI2P10070 1586 aa19.68■□□□□ 0.74
LIMS1-205ENST00000410093 ARID3CA6NKF2 412 aa19.67■□□□□ 0.74
LIMS1-205ENST00000410093 WDR7Q9Y4E6 1490 aa19.67■□□□□ 0.74
LIMS1-205ENST00000410093 DNMT1P26358 1616 aaKnown RBP19.67■□□□□ 0.74
LIMS1-205ENST00000410093 KCNH8Q96L42 1107 aa19.66■□□□□ 0.74
LIMS1-205ENST00000410093 KDM6BO15054 1643 aa19.63■□□□□ 0.73
LIMS1-205ENST00000410093 KIF14Q15058 1648 aa19.6■□□□□ 0.73
LIMS1-205ENST00000410093 TEX14Q8IWB6 1497 aa19.6■□□□□ 0.73
LIMS1-205ENST00000410093 DAPK1P53355 1430 aa19.6■□□□□ 0.73
LIMS1-205ENST00000410093 ATP10BO94823 1461 aa19.58■□□□□ 0.72
LIMS1-205ENST00000410093 ADGBQ8N7X0 1667 aa19.58■□□□□ 0.72
LIMS1-205ENST00000410093 GPATCH8Q9UKJ3 1502 aaKnown RBP19.57■□□□□ 0.72
LIMS1-205ENST00000410093 PLEKHD1A6NEE1 506 aa19.56■□□□□ 0.72
LIMS1-205ENST00000410093 MAP3K4Q9Y6R4 1608 aa19.56■□□□□ 0.72
LIMS1-205ENST00000410093 CD109Q6YHK3 1445 aa19.55■□□□□ 0.72
LIMS1-205ENST00000410093 ABCC5O15440 1437 aa19.54■□□□□ 0.72
LIMS1-205ENST00000410093 CROCC2H7BZ55 1655 aa19.54■□□□□ 0.72
LIMS1-205ENST00000410093 CAMSAP2Q08AD1 1489 aa19.53■□□□□ 0.72
LIMS1-205ENST00000410093 PPRC1Q5VV67 1664 aaKnown RBP19.52■□□□□ 0.72
LIMS1-205ENST00000410093 CDC42BPAQ5VT25 1732 aa19.52■□□□□ 0.71
LIMS1-205ENST00000410093 CFDP1Q9UEE9 299 aaPredicted RBP19.51■□□□□ 0.71
LIMS1-205ENST00000410093 ADGRL2O95490 1459 aa19.51■□□□□ 0.71
LIMS1-205ENST00000410093 CENPBP07199 599 aaPredicted RBP19.51■□□□□ 0.71
LIMS1-205ENST00000410093 SHANK2Q9UPX8 1470 aa19.49■□□□□ 0.71
LIMS1-205ENST00000410093 TONSLQ96HA7 1378 aa19.49■□□□□ 0.71
LIMS1-205ENST00000410093 PPP1R15AO75807 674 aaPredicted RBP19.47■□□□□ 0.71
LIMS1-205ENST00000410093 SIN3AQ96ST3 1273 aa19.46■□□□□ 0.71
LIMS1-205ENST00000410093 RRP7BPQ9NSQ0 103 aa19.46■□□□□ 0.71
LIMS1-205ENST00000410093 NEUROD1Q13562 356 aa19.45■□□□□ 0.7
LIMS1-205ENST00000410093 ARHGEF5Q12774 1597 aa19.44■□□□□ 0.7
LIMS1-205ENST00000410093 CHIC2Q9UKJ5 165 aa19.44■□□□□ 0.7
LIMS1-205ENST00000410093 RSPH4AQ5TD94 716 aa19.42■□□□□ 0.7
LIMS1-205ENST00000410093 ANKRD30AQ9BXX3 1397 aa19.42■□□□□ 0.7
LIMS1-205ENST00000410093 NCOA1Q15788 1441 aa19.42■□□□□ 0.7
LIMS1-205ENST00000410093 PREX2Q70Z35 1606 aa19.41■□□□□ 0.7
LIMS1-205ENST00000410093 COL17A1Q9UMD9 1497 aaPredicted RBP19.4■□□□□ 0.7
LIMS1-205ENST00000410093 ABCA9Q8IUA7 1624 aa19.39■□□□□ 0.69
LIMS1-205ENST00000410093 TRIM52Q96A61 297 aa19.39■□□□□ 0.69
LIMS1-205ENST00000410093 MPHOSPH9Q99550 1183 aa19.39■□□□□ 0.69
LIMS1-205ENST00000410093 ZNF644Q9H582 1327 aaPredicted RBP19.37■□□□□ 0.69
LIMS1-205ENST00000410093 MIER1Q8N108 512 aa19.36■□□□□ 0.69
LIMS1-205ENST00000410093 DENND4BO75064 1496 aaPredicted RBP19.35■□□□□ 0.69
LIMS1-205ENST00000410093 CDC42BPBQ9Y5S2 1711 aa19.35■□□□□ 0.69
LIMS1-205ENST00000410093 PLEKHH2Q8IVE3 1493 aa19.35■□□□□ 0.69
LIMS1-205ENST00000410093 MYO5CQ9NQX4 1742 aa19.32■□□□□ 0.68
LIMS1-205ENST00000410093 C9orf84Q5VXU9 1444 aa19.31■□□□□ 0.68
LIMS1-205ENST00000410093 ARAP3Q8WWN8 1544 aa19.31■□□□□ 0.68
LIMS1-205ENST00000410093 TSPY4P0CV99 314 aa19.31■□□□□ 0.68
LIMS1-205ENST00000410093 TSPY10P0CW01 314 aa19.31■□□□□ 0.68
LIMS1-205ENST00000410093 NEO1Q92859 1461 aa19.31■□□□□ 0.68
LIMS1-205ENST00000410093 MAST1Q9Y2H9 1570 aa19.31■□□□□ 0.68
LIMS1-205ENST00000410093 ANKRD30BQ9BXX2 1392 aa19.3■□□□□ 0.68
LIMS1-205ENST00000410093 RPRD2Q5VT52 1461 aaKnown RBP19.3■□□□□ 0.68
LIMS1-205ENST00000410093 KDM4FA0A1W2PPD8 638 aa19.3■□□□□ 0.68
LIMS1-205ENST00000410093 POTEDQ86YR6 584 aa19.3■□□□□ 0.68
LIMS1-205ENST00000410093 CCDC141Q6ZP82 1450 aa19.3■□□□□ 0.68
LIMS1-205ENST00000410093 KDM5DQ9BY66 1539 aa19.29■□□□□ 0.68
LIMS1-205ENST00000410093 ZNF777Q9ULD5 760 aaPredicted RBP19.29■□□□□ 0.68
LIMS1-205ENST00000410093 ANKRD50Q9ULJ7 1429 aa19.29■□□□□ 0.68
LIMS1-205ENST00000410093 KIAA1107Q9UPP5 1409 aa19.28■□□□□ 0.68
LIMS1-205ENST00000410093 SAMD9LQ8IVG5 1584 aa19.28■□□□□ 0.68
LIMS1-205ENST00000410093 MBD5Q9P267 1494 aa19.27■□□□□ 0.68
LIMS1-205ENST00000410093 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.27■□□□□ 0.68
LIMS1-205ENST00000410093 PZPP20742 1482 aa19.26■□□□□ 0.67
LIMS1-205ENST00000410093 RAPGEF3O95398 923 aa19.25■□□□□ 0.67
LIMS1-205ENST00000410093 SLC4A1APQ9BWU0 796 aaKnown RBP19.25■□□□□ 0.67
LIMS1-205ENST00000410093 FANCAO15360 1455 aa19.25■□□□□ 0.67
LIMS1-205ENST00000410093 TTC37Q6PGP7 1564 aa19.24■□□□□ 0.67
LIMS1-205ENST00000410093 ARHGAP5Q13017 1502 aa19.23■□□□□ 0.67
LIMS1-205ENST00000410093 CFAP74Q9C0B2 1584 aa19.23■□□□□ 0.67
LIMS1-205ENST00000410093 ADGRL1O94910 1474 aa19.22■□□□□ 0.67
LIMS1-205ENST00000410093 PLXNC1O60486 1568 aa19.21■□□□□ 0.67
LIMS1-205ENST00000410093 PLCH2O75038 1416 aa19.2■□□□□ 0.66
LIMS1-205ENST00000410093 EFCAB2Q5VUJ9 269 aa19.2■□□□□ 0.66
LIMS1-205ENST00000410093 KIF15Q9NS87 1388 aa19.19■□□□□ 0.66
LIMS1-205ENST00000410093 SYCP2Q9BX26 1530 aa19.15■□□□□ 0.66
LIMS1-205ENST00000410093 ARID4BQ4LE39 1312 aaPredicted RBP19.15■□□□□ 0.66
LIMS1-205ENST00000410093 UNC13BO14795 1591 aa19.13■□□□□ 0.65
LIMS1-205ENST00000410093 HNRNPMP52272 730 aaKnown RBP eCLIP19.13■□□□□ 0.65
LIMS1-205ENST00000410093 L3MBTL2Q969R5 705 aa19.13■□□□□ 0.65
LIMS1-205ENST00000410093 SCAPERQ9BY12 1400 aa19.13■□□□□ 0.65
LIMS1-205ENST00000410093 NUP155O75694 1391 aa19.12■□□□□ 0.65
LIMS1-205ENST00000410093 SCAF1Q9H7N4 1312 aaKnown RBP19.12■□□□□ 0.65
LIMS1-205ENST00000410093 EIF4G2P78344 907 aaKnown RBP eCLIP19.11■□□□□ 0.65
LIMS1-205ENST00000410093 DUOX2Q9NRD8 1548 aa19.11■□□□□ 0.65
LIMS1-205ENST00000410093 ARHGEF12Q9NZN5 1544 aa19.1■□□□□ 0.65
LIMS1-205ENST00000410093 ABCC1P33527 1531 aa19.1■□□□□ 0.65
LIMS1-205ENST00000410093 MYT1LQ9UL68 1186 aa19.1■□□□□ 0.65
LIMS1-205ENST00000410093 POLR1AO95602 1720 aaPredicted RBP19.09■□□□□ 0.65
LIMS1-205ENST00000410093 PKD2Q13563 968 aa19.09■□□□□ 0.65
LIMS1-205ENST00000410093 FRMPD1Q5SYB0 1578 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms