RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 HMMRO75330 724 aa9.85□□□□□ -0.83
SYNE1-210ENST00000409694 KANK1Q14678 1352 aa9.85□□□□□ -0.83
SYNE1-210ENST00000409694 RSPH6AQ9H0K4 717 aa9.85□□□□□ -0.83
SYNE1-210ENST00000409694 RASSF8Q8NHQ8 419 aa9.85□□□□□ -0.83
SYNE1-210ENST00000409694 MIER1Q8N108 512 aa9.85□□□□□ -0.83
SYNE1-210ENST00000409694 POGKQ9P215 609 aa9.85□□□□□ -0.83
SYNE1-210ENST00000409694 HDGFP51858 240 aaKnown RBP9.84□□□□□ -0.83
SYNE1-210ENST00000409694 RTF1Q92541 710 aaKnown RBP9.84□□□□□ -0.83
SYNE1-210ENST00000409694 CDR1P51861 262 aa9.84□□□□□ -0.83
SYNE1-210ENST00000409694 CLIP1P30622 1438 aa9.84□□□□□ -0.83
SYNE1-210ENST00000409694 HSP90B1P14625 803 aaKnown RBP9.84□□□□□ -0.83
SYNE1-210ENST00000409694 CARD11Q9BXL7 1154 aa9.84□□□□□ -0.83
SYNE1-210ENST00000409694 TCERG1O14776 1098 aaKnown RBP9.82□□□□□ -0.84
SYNE1-210ENST00000409694 HSP90AA2PQ14568 343 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-210ENST00000409694 EEA1Q15075 1411 aa9.82□□□□□ -0.84
SYNE1-210ENST00000409694 DDX11L8A8MPP1 907 aa9.82□□□□□ -0.84
SYNE1-210ENST00000409694 PLEKHG5O94827 1062 aa9.82□□□□□ -0.84
SYNE1-210ENST00000409694 GOLGA3Q08378 1498 aa9.82□□□□□ -0.84
SYNE1-210ENST00000409694 KIF16BQ96L93 1317 aa9.81□□□□□ -0.84
SYNE1-210ENST00000409694 TPD52L1Q16890 204 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-210ENST00000409694 RWDD1Q9H446 243 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-210ENST00000409694 NEUROD2Q15784 382 aa9.8□□□□□ -0.84
SYNE1-210ENST00000409694 ATP6V1DQ9Y5K8 247 aa9.8□□□□□ -0.84
SYNE1-210ENST00000409694 AK7Q96M32 723 aa9.8□□□□□ -0.84
SYNE1-210ENST00000409694 PMFBP1Q8TBY8 1022 aa9.79□□□□□ -0.84
SYNE1-210ENST00000409694 U2SURPO15042 1029 aaKnown RBP9.79□□□□□ -0.84
SYNE1-210ENST00000409694 TMF1P82094 1093 aa9.79□□□□□ -0.84
SYNE1-210ENST00000409694 ACBD3Q9H3P7 528 aa9.79□□□□□ -0.84
SYNE1-210ENST00000409694 ZCCHC6Q5VYS8 1495 aaKnown RBP9.79□□□□□ -0.84
SYNE1-210ENST00000409694 ST18O60284 1047 aa9.78□□□□□ -0.84
SYNE1-210ENST00000409694 CHMP7Q8WUX9 453 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-210ENST00000409694 EIF3AQ14152 1382 aaKnown RBP9.78□□□□□ -0.84
SYNE1-210ENST00000409694 IPO7O95373 1038 aaKnown RBP9.78□□□□□ -0.84
SYNE1-210ENST00000409694 DCTN1Q14203 1278 aa9.78□□□□□ -0.84
SYNE1-210ENST00000409694 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.78□□□□□ -0.84
SYNE1-210ENST00000409694 SPAG9O60271 1321 aaKnown RBP9.78□□□□□ -0.84
SYNE1-210ENST00000409694 LMOD2Q6P5Q4 547 aa9.78□□□□□ -0.84
SYNE1-210ENST00000409694 ANKRD20A12PQ8NF67 263 aa9.77□□□□□ -0.84
SYNE1-210ENST00000409694 GOLGA6L19H0YKK7 550 aa9.77□□□□□ -0.85
SYNE1-210ENST00000409694 ARID3AQ99856 593 aa9.77□□□□□ -0.85
SYNE1-210ENST00000409694 HOOK1Q9UJC3 728 aaKnown RBP9.77□□□□□ -0.85
SYNE1-210ENST00000409694 RDXP35241 583 aaKnown RBP9.77□□□□□ -0.85
SYNE1-210ENST00000409694 SKOR2Q2VWA4 1001 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-210ENST00000409694 GORABQ5T7V8 394 aa9.77□□□□□ -0.85
SYNE1-210ENST00000409694 KTN1Q86UP2 1357 aaKnown RBP9.77□□□□□ -0.85
SYNE1-210ENST00000409694 PLEKHD1A6NEE1 506 aa9.77□□□□□ -0.85
SYNE1-210ENST00000409694 ZNF771Q7L3S4 317 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-210ENST00000409694 TCEAL9Q9UHQ7 104 aa9.77□□□□□ -0.85
SYNE1-210ENST00000409694 SPRYD3Q8NCJ5 442 aa9.77□□□□□ -0.85
SYNE1-210ENST00000409694 PDE4CQ08493 712 aa9.76□□□□□ -0.85
SYNE1-210ENST00000409694 RUFY1Q96T51 708 aa9.76□□□□□ -0.85
SYNE1-210ENST00000409694 CCDC191Q8NCU4 936 aa9.76□□□□□ -0.85
SYNE1-210ENST00000409694 MYO6Q9UM54 1294 aa9.75□□□□□ -0.85
SYNE1-210ENST00000409694 MARCH6O60337 910 aa9.75□□□□□ -0.85
SYNE1-210ENST00000409694 CWC15Q9P013 229 aaKnown RBP9.75□□□□□ -0.85
SYNE1-210ENST00000409694 PATL2C9JE40 543 aaKnown RBP9.75□□□□□ -0.85
SYNE1-210ENST00000409694 RRP7BPQ9NSQ0 103 aa9.75□□□□□ -0.85
SYNE1-210ENST00000409694 CREBRFQ8IUR6 639 aa9.74□□□□□ -0.85
SYNE1-210ENST00000409694 VPS53Q5VIR6 699 aa9.74□□□□□ -0.85
SYNE1-210ENST00000409694 LRRFIP1Q32MZ4 808 aaKnown RBP9.74□□□□□ -0.85
SYNE1-210ENST00000409694 PES1O00541 588 aaKnown RBP9.73□□□□□ -0.85
SYNE1-210ENST00000409694 ANO8Q9HCE9 1232 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-210ENST00000409694 G3V3G9 751 aa9.73□□□□□ -0.85
SYNE1-210ENST00000409694 DCAF8Q5TAQ9 597 aa9.73□□□□□ -0.85
SYNE1-210ENST00000409694 CCDC47Q96A33 483 aaKnown RBP9.73□□□□□ -0.85
SYNE1-210ENST00000409694 GZF1Q9H116 711 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-210ENST00000409694 ARGLU1Q9NWB6 273 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-210ENST00000409694 SF3A1Q15459 793 aaKnown RBP9.73□□□□□ -0.85
SYNE1-210ENST00000409694 ZRSR2Q15696 482 aaKnown RBP9.73□□□□□ -0.85
SYNE1-210ENST00000409694 TAF7LQ5H9L4 462 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 CC2D1BQ5T0F9 858 aaKnown RBP9.72□□□□□ -0.85
SYNE1-210ENST00000409694 H3BQV1 296 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 IFFO2Q5TF58 517 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 MAP7D2Q96T17 732 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 RGL3Q3MIN7 710 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 PHLDB1Q86UU1 1377 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 ITPRIPQ8IWB1 547 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 MORC1Q86VD1 984 aa9.72□□□□□ -0.85
SYNE1-210ENST00000409694 STK31Q9BXU1 1019 aa9.71□□□□□ -0.85
SYNE1-210ENST00000409694 CCER2I3L3R5 266 aa9.71□□□□□ -0.85
SYNE1-210ENST00000409694 TRIM6-TRIM34B2RNG4 842 aa9.71□□□□□ -0.85
SYNE1-210ENST00000409694 CCAR2Q8N163 923 aaKnown RBP9.71□□□□□ -0.85
SYNE1-210ENST00000409694 HDGFL2Q7Z4V5 671 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-210ENST00000409694 AMOTL1Q8IY63 956 aa9.71□□□□□ -0.86
SYNE1-210ENST00000409694 AKAP17AQ02040 695 aaKnown RBP9.71□□□□□ -0.86
SYNE1-210ENST00000409694 MTERF4Q7Z6M4 381 aaKnown RBP9.71□□□□□ -0.86
SYNE1-210ENST00000409694 CFDP1Q9UEE9 299 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-210ENST00000409694 BECN2A8MW95 431 aa9.7□□□□□ -0.86
SYNE1-210ENST00000409694 FHAD1B1AJZ9 1412 aa9.7□□□□□ -0.86
SYNE1-210ENST00000409694 B4GALNT3Q6L9W6 998 aa9.7□□□□□ -0.86
SYNE1-210ENST00000409694 HIRIP3Q9BW71 556 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-210ENST00000409694 LMOD3Q0VAK6 560 aa9.69□□□□□ -0.86
SYNE1-210ENST00000409694 NEXNQ0ZGT2 675 aa9.69□□□□□ -0.86
SYNE1-210ENST00000409694 HSP90B2PQ58FF3 399 aa9.69□□□□□ -0.86
SYNE1-210ENST00000409694 CCDC173Q0VFZ6 552 aa9.69□□□□□ -0.86
SYNE1-210ENST00000409694 CNKSR2Q8WXI2 1034 aa9.69□□□□□ -0.86
SYNE1-210ENST00000409694 CEP164Q9UPV0 1460 aa9.68□□□□□ -0.86
SYNE1-210ENST00000409694 ERCC4Q92889 916 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-210ENST00000409694 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-210ENST00000409694 SRPK2P78362 688 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms