RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 IQGAP2Q13576 1575 aa18.56■□□□□ 0.56
VPS54-203ENST00000409558 MYT1LQ9UL68 1186 aa18.54■□□□□ 0.56
VPS54-203ENST00000409558 SUPT6HQ7KZ85 1726 aaKnown RBP18.54■□□□□ 0.56
VPS54-203ENST00000409558 TSHZ2Q9NRE2 1034 aa18.53■□□□□ 0.56
VPS54-203ENST00000409558 EHBP1L1Q8N3D4 1523 aa18.53■□□□□ 0.56
VPS54-203ENST00000409558 KDM6BO15054 1643 aa18.53■□□□□ 0.56
VPS54-203ENST00000409558 LRRIQ1Q96JM4 1722 aa18.52■□□□□ 0.56
VPS54-203ENST00000409558 TARBP1Q13395 1621 aaKnown RBP18.52■□□□□ 0.55
VPS54-203ENST00000409558 TSPY4P0CV99 314 aa18.51■□□□□ 0.55
VPS54-203ENST00000409558 TSPY10P0CW01 314 aa18.51■□□□□ 0.55
VPS54-203ENST00000409558 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.51■□□□□ 0.55
VPS54-203ENST00000409558 SAMD9Q5K651 1589 aa18.5■□□□□ 0.55
VPS54-203ENST00000409558 UGGT2Q9NYU1 1516 aa18.49■□□□□ 0.55
VPS54-203ENST00000409558 CCER2I3L3R5 266 aa18.48■□□□□ 0.55
VPS54-203ENST00000409558 DCAF11Q8TEB1 546 aa18.46■□□□□ 0.55
VPS54-203ENST00000409558 ABCC5O15440 1437 aa18.45■□□□□ 0.54
VPS54-203ENST00000409558 NUP155O75694 1391 aa18.45■□□□□ 0.54
VPS54-203ENST00000409558 DAPK1P53355 1430 aa18.45■□□□□ 0.54
VPS54-203ENST00000409558 SENP3Q9H4L4 574 aaPredicted RBP18.44■□□□□ 0.54
VPS54-203ENST00000409558 HECW1Q76N89 1606 aa18.44■□□□□ 0.54
VPS54-203ENST00000409558 NUP153P49790 1475 aaKnown RBP18.43■□□□□ 0.54
VPS54-203ENST00000409558 IFT140Q96RY7 1462 aa18.43■□□□□ 0.54
VPS54-203ENST00000409558 CARD11Q9BXL7 1154 aa18.42■□□□□ 0.54
VPS54-203ENST00000409558 GRIN2AQ12879 1464 aa18.42■□□□□ 0.54
VPS54-203ENST00000409558 ADAMTS12P58397 1594 aa18.42■□□□□ 0.54
VPS54-203ENST00000409558 KIAA0586Q9BVV6 1533 aa18.41■□□□□ 0.54
VPS54-203ENST00000409558 PBRM1Q86U86 1689 aa18.41■□□□□ 0.54
VPS54-203ENST00000409558 KIF7Q2M1P5 1343 aa18.4■□□□□ 0.54
VPS54-203ENST00000409558 DISP1Q96F81 1524 aa18.4■□□□□ 0.54
VPS54-203ENST00000409558 PRKRIP1Q9H875 184 aaPredicted RBP18.4■□□□□ 0.54
VPS54-203ENST00000409558 DENND4BO75064 1496 aaPredicted RBP18.39■□□□□ 0.53
VPS54-203ENST00000409558 WDR62O43379 1518 aa18.37■□□□□ 0.53
VPS54-203ENST00000409558 CARMIL2Q6F5E8 1435 aa18.36■□□□□ 0.53
VPS54-203ENST00000409558 ANKRD30BQ9BXX2 1392 aa18.36■□□□□ 0.53
VPS54-203ENST00000409558 B4GALNT3Q6L9W6 998 aa18.36■□□□□ 0.53
VPS54-203ENST00000409558 CCDC7Q96M83 1385 aa18.35■□□□□ 0.53
VPS54-203ENST00000409558 MIA2Q96PC5 1412 aa18.34■□□□□ 0.53
VPS54-203ENST00000409558 ST20-MTHFSA0A0A6YYL1 179 aa18.34■□□□□ 0.53
VPS54-203ENST00000409558 ARHGEF11O15085 1522 aa18.33■□□□□ 0.52
VPS54-203ENST00000409558 TROQ12816 1431 aaPredicted RBP18.32■□□□□ 0.52
VPS54-203ENST00000409558 ANKRD30AQ9BXX3 1397 aa18.32■□□□□ 0.52
VPS54-203ENST00000409558 EIF4G3O43432 1585 aaKnown RBP18.31■□□□□ 0.52
VPS54-203ENST00000409558 TMC1Q8TDI8 760 aa18.31■□□□□ 0.52
VPS54-203ENST00000409558 CAMSAP2Q08AD1 1489 aa18.29■□□□□ 0.52
VPS54-203ENST00000409558 PTPRGP23470 1445 aa18.29■□□□□ 0.52
VPS54-203ENST00000409558 KIAA0556O60303 1618 aa18.29■□□□□ 0.52
VPS54-203ENST00000409558 ANKRD50Q9ULJ7 1429 aa18.29■□□□□ 0.52
VPS54-203ENST00000409558 USP47Q96K76 1375 aa18.28■□□□□ 0.52
VPS54-203ENST00000409558 NCOA1Q15788 1441 aa18.27■□□□□ 0.52
VPS54-203ENST00000409558 TCOF1Q13428 1488 aaKnown RBP18.27■□□□□ 0.52
VPS54-203ENST00000409558 GPATCH8Q9UKJ3 1502 aaKnown RBP18.27■□□□□ 0.52
VPS54-203ENST00000409558 RBM19Q9Y4C8 960 aaKnown RBP18.27■□□□□ 0.51
VPS54-203ENST00000409558 NBPF1Q3BBV0 1214 aa18.26■□□□□ 0.51
VPS54-203ENST00000409558 CC2D1BQ5T0F9 858 aaKnown RBP18.26■□□□□ 0.51
VPS54-203ENST00000409558 KIF14Q15058 1648 aa18.25■□□□□ 0.51
VPS54-203ENST00000409558 CNTLNQ9NXG0 1405 aa18.24■□□□□ 0.51
VPS54-203ENST00000409558 RAPGEF6Q8TEU7 1601 aa18.24■□□□□ 0.51
VPS54-203ENST00000409558 SYNJ2O15056 1496 aa18.24■□□□□ 0.51
VPS54-203ENST00000409558 KDM5BQ9UGL1 1544 aa18.24■□□□□ 0.51
VPS54-203ENST00000409558 KIF15Q9NS87 1388 aa18.24■□□□□ 0.51
VPS54-203ENST00000409558 AKNAQ7Z591 1439 aa18.23■□□□□ 0.51
VPS54-203ENST00000409558 CEP170Q5SW79 1584 aa18.23■□□□□ 0.51
VPS54-203ENST00000409558 RPRD2Q5VT52 1461 aaKnown RBP18.21■□□□□ 0.51
VPS54-203ENST00000409558 ATP10BO94823 1461 aa18.19■□□□□ 0.5
VPS54-203ENST00000409558 C9orf84Q5VXU9 1444 aa18.19■□□□□ 0.5
VPS54-203ENST00000409558 ROCK1Q13464 1354 aa18.18■□□□□ 0.5
VPS54-203ENST00000409558 ROCK2O75116 1388 aaKnown RBP18.18■□□□□ 0.5
VPS54-203ENST00000409558 KIAA1107Q9UPP5 1409 aa18.17■□□□□ 0.5
VPS54-203ENST00000409558 PZPP20742 1482 aa18.17■□□□□ 0.5
VPS54-203ENST00000409558 CHGAP10645 457 aaKnown RBP18.17■□□□□ 0.5
VPS54-203ENST00000409558 AFAP1Q8N556 730 aa18.16■□□□□ 0.5
VPS54-203ENST00000409558 MAGI1Q96QZ7 1491 aaPredicted RBP18.15■□□□□ 0.5
VPS54-203ENST00000409558 ERICH6Q7L0X2 663 aa18.12■□□□□ 0.49
VPS54-203ENST00000409558 TEX14Q8IWB6 1497 aa18.12■□□□□ 0.49
VPS54-203ENST00000409558 DNMT1P26358 1616 aaKnown RBP18.1■□□□□ 0.49
VPS54-203ENST00000409558 GCC2Q8IWJ2 1684 aa18.09■□□□□ 0.49
VPS54-203ENST00000409558 CCDC136Q96JN2 1154 aa18.07■□□□□ 0.48
VPS54-203ENST00000409558 PPP4R2Q9NY27 417 aa18.05■□□□□ 0.48
VPS54-203ENST00000409558 CCDC144AA2RUR9 1427 aa18.05■□□□□ 0.48
VPS54-203ENST00000409558 NUTM2DQ5VT03 806 aaPredicted RBP18.04■□□□□ 0.48
VPS54-203ENST00000409558 ZBED9Q6R2W3 1325 aa18.04■□□□□ 0.48
VPS54-203ENST00000409558 NUP160Q12769 1436 aa18.04■□□□□ 0.48
VPS54-203ENST00000409558 ARHGAP5Q13017 1502 aa18.04■□□□□ 0.48
VPS54-203ENST00000409558 PANK3Q9H999 370 aa18.03■□□□□ 0.48
VPS54-203ENST00000409558 KIF3BO15066 747 aa18.02■□□□□ 0.47
VPS54-203ENST00000409558 PLIN1O60240 522 aa18.01■□□□□ 0.47
VPS54-203ENST00000409558 CDCA7LQ96GN5 454 aa18.01■□□□□ 0.47
VPS54-203ENST00000409558 SPATA31E1Q6ZUB1 1445 aa18.01■□□□□ 0.47
VPS54-203ENST00000409558 EFCAB2Q5VUJ9 269 aa18.01■□□□□ 0.47
VPS54-203ENST00000409558 NPM2Q86SE8 214 aaKnown RBP18.01■□□□□ 0.47
VPS54-203ENST00000409558 ANP32EQ9BTT0 268 aa18■□□□□ 0.47
VPS54-203ENST00000409558 TNNT2P45379 298 aaPredicted RBP18■□□□□ 0.47
VPS54-203ENST00000409558 PLEKHH2Q8IVE3 1493 aa18■□□□□ 0.47
VPS54-203ENST00000409558 PNISRQ8TF01 805 aaKnown RBP17.99■□□□□ 0.47
VPS54-203ENST00000409558 DHX29Q7Z478 1369 aaKnown RBP17.98■□□□□ 0.47
VPS54-203ENST00000409558 ERCC6L2Q5T890 1561 aa17.97■□□□□ 0.47
VPS54-203ENST00000409558 SPAG9O60271 1321 aaKnown RBP17.97■□□□□ 0.47
VPS54-203ENST00000409558 NUDCQ9Y266 331 aa17.97■□□□□ 0.47
VPS54-203ENST00000409558 SKAP1Q86WV1 359 aa17.96■□□□□ 0.47
VPS54-203ENST00000409558 GGT6Q6P531 493 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms