RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 HMMRO75330 724 aa7.68□□□□□ -1.18
SCN1A-203ENST00000409050 CARMIL2Q6F5E8 1435 aa7.68□□□□□ -1.18
SCN1A-203ENST00000409050 SKOR2Q2VWA4 1001 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-203ENST00000409050 GPATCH3Q96I76 525 aa7.68□□□□□ -1.18
SCN1A-203ENST00000409050 HDGFL2Q7Z4V5 671 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-203ENST00000409050 PLPPR3Q6T4P5 718 aa7.67□□□□□ -1.18
SCN1A-203ENST00000409050 DDX11L8A8MPP1 907 aa7.66□□□□□ -1.18
SCN1A-203ENST00000409050 GOLGA6L1Q8N7Z2 621 aa7.66□□□□□ -1.18
SCN1A-203ENST00000409050 GOLGA2Q08379 1002 aa7.66□□□□□ -1.18
SCN1A-203ENST00000409050 STAC3Q96MF2 364 aa7.66□□□□□ -1.18
SCN1A-203ENST00000409050 IRX6P78412 446 aaPredicted RBP7.65□□□□□ -1.18
SCN1A-203ENST00000409050 C14orf37Q86TY3 774 aa7.65□□□□□ -1.18
SCN1A-203ENST00000409050 CARMIL1Q5VZK9 1371 aa7.65□□□□□ -1.18
SCN1A-203ENST00000409050 MORC1Q86VD1 984 aa7.65□□□□□ -1.18
SCN1A-203ENST00000409050 RTF1Q92541 710 aaKnown RBP7.65□□□□□ -1.18
SCN1A-203ENST00000409050 RGS3P49796 1198 aa7.65□□□□□ -1.18
SCN1A-203ENST00000409050 ANO8Q9HCE9 1232 aaPredicted RBP7.65□□□□□ -1.18
SCN1A-203ENST00000409050 ANKRD30AQ9BXX3 1397 aa7.65□□□□□ -1.19
SCN1A-203ENST00000409050 DRC7Q8IY82 874 aa7.65□□□□□ -1.19
SCN1A-203ENST00000409050 ATP6V1DQ9Y5K8 247 aa7.65□□□□□ -1.19
SCN1A-203ENST00000409050 GOLGA6L3A6NEY3 463 aa7.64□□□□□ -1.19
SCN1A-203ENST00000409050 FRAT1Q92837 279 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-203ENST00000409050 RSPH6AQ9H0K4 717 aa7.64□□□□□ -1.19
SCN1A-203ENST00000409050 DEKP35659 375 aaKnown RBP7.64□□□□□ -1.19
SCN1A-203ENST00000409050 WWC1Q8IX03 1113 aa7.63□□□□□ -1.19
SCN1A-203ENST00000409050 RCAN3Q9UKA8 241 aa7.63□□□□□ -1.19
SCN1A-203ENST00000409050 UACAQ9BZF9 1416 aa7.63□□□□□ -1.19
SCN1A-203ENST00000409050 PLCB2Q00722 1185 aa7.63□□□□□ -1.19
SCN1A-203ENST00000409050 RGL3Q3MIN7 710 aa7.63□□□□□ -1.19
SCN1A-203ENST00000409050 MYO15BQ96JP2 1530 aa7.63□□□□□ -1.19
SCN1A-203ENST00000409050 SMARCA2P51531 1590 aa7.62□□□□□ -1.19
SCN1A-203ENST00000409050 GNL2Q13823 731 aaKnown RBP7.62□□□□□ -1.19
SCN1A-203ENST00000409050 IPO9Q96P70 1041 aaKnown RBP7.62□□□□□ -1.19
SCN1A-203ENST00000409050 SPAG9O60271 1321 aaKnown RBP7.62□□□□□ -1.19
SCN1A-203ENST00000409050 LAS1LQ9Y4W2 734 aaKnown RBP7.62□□□□□ -1.19
SCN1A-203ENST00000409050 GPS2Q13227 327 aa7.62□□□□□ -1.19
SCN1A-203ENST00000409050 NLRP13Q86W25 1043 aa7.62□□□□□ -1.19
SCN1A-203ENST00000409050 RBM19Q9Y4C8 960 aaKnown RBP7.62□□□□□ -1.19
SCN1A-203ENST00000409050 ST18O60284 1047 aa7.61□□□□□ -1.19
SCN1A-203ENST00000409050 LRRFIP1Q32MZ4 808 aaKnown RBP7.61□□□□□ -1.19
SCN1A-203ENST00000409050 U2SURPO15042 1029 aaKnown RBP7.61□□□□□ -1.19
SCN1A-203ENST00000409050 SETQ01105 290 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-203ENST00000409050 TERF2IPQ9NYB0 399 aa7.6□□□□□ -1.19
SCN1A-203ENST00000409050 STK31Q9BXU1 1019 aa7.6□□□□□ -1.19
SCN1A-203ENST00000409050 KIF15Q9NS87 1388 aa7.6□□□□□ -1.19
SCN1A-203ENST00000409050 TPM3P06753 285 aa7.59□□□□□ -1.19
SCN1A-203ENST00000409050 TNNT3P45378 269 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-203ENST00000409050 DHX8Q14562 1220 aaKnown RBP7.59□□□□□ -1.19
SCN1A-203ENST00000409050 CCDC70Q6NSX1 233 aa7.59□□□□□ -1.19
SCN1A-203ENST00000409050 CENPQQ7L2Z9 268 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-203ENST00000409050 MTERF4Q7Z6M4 381 aaKnown RBP7.59□□□□□ -1.19
SCN1A-203ENST00000409050 HSPA5P11021 654 aaKnown RBP7.59□□□□□ -1.19
SCN1A-203ENST00000409050 CCDC18Q5T9S5 1454 aa7.59□□□□□ -1.2
SCN1A-203ENST00000409050 DCAF11Q8TEB1 546 aa7.59□□□□□ -1.2
SCN1A-203ENST00000409050 KCNH8Q96L42 1107 aa7.59□□□□□ -1.2
SCN1A-203ENST00000409050 KIF16BQ96L93 1317 aa7.58□□□□□ -1.2
SCN1A-203ENST00000409050 CGNL1Q0VF96 1302 aa7.58□□□□□ -1.2
SCN1A-203ENST00000409050 CUX2O14529 1486 aa7.58□□□□□ -1.2
SCN1A-203ENST00000409050 EFCAB2Q5VUJ9 269 aa7.58□□□□□ -1.2
SCN1A-203ENST00000409050 PDS5BQ9NTI5 1447 aa7.58□□□□□ -1.2
SCN1A-203ENST00000409050 ROCK1Q13464 1354 aa7.57□□□□□ -1.2
SCN1A-203ENST00000409050 B4GALNT3Q6L9W6 998 aa7.57□□□□□ -1.2
SCN1A-203ENST00000409050 CC2D1BQ5T0F9 858 aaKnown RBP7.57□□□□□ -1.2
SCN1A-203ENST00000409050 NOC3LQ8WTT2 800 aaKnown RBP7.57□□□□□ -1.2
SCN1A-203ENST00000409050 NPHP1O15259 732 aa7.57□□□□□ -1.2
SCN1A-203ENST00000409050 TPM1P09493 284 aa7.57□□□□□ -1.2
SCN1A-203ENST00000409050 NEUROD2Q15784 382 aa7.57□□□□□ -1.2
SCN1A-203ENST00000409050 ZBTB7CA1YPR0 619 aa7.56□□□□□ -1.2
SCN1A-203ENST00000409050 SRPK2P78362 688 aaKnown RBP7.56□□□□□ -1.2
SCN1A-203ENST00000409050 MAP7D2Q96T17 732 aa7.56□□□□□ -1.2
SCN1A-203ENST00000409050 TPM2P07951 284 aa7.56□□□□□ -1.2
SCN1A-203ENST00000409050 NAP1L2Q9ULW6 460 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-203ENST00000409050 CENPJQ9HC77 1338 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-203ENST00000409050 TMX4Q9H1E5 349 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-203ENST00000409050 FANCIQ9NVI1 1328 aa7.55□□□□□ -1.2
SCN1A-203ENST00000409050 MYBBP1AQ9BQG0 1328 aaKnown RBP7.55□□□□□ -1.2
SCN1A-203ENST00000409050 ABCC8Q09428 1581 aa7.55□□□□□ -1.2
SCN1A-203ENST00000409050 CEP89Q96ST8 783 aa7.55□□□□□ -1.2
SCN1A-203ENST00000409050 TSR1Q2NL82 804 aaKnown RBP7.55□□□□□ -1.2
SCN1A-203ENST00000409050 HIRIP3Q9BW71 556 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-203ENST00000409050 ERCC6Q03468 1493 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 SIN3AQ96ST3 1273 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 CDR1P51861 262 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 RUFY2Q8WXA3 655 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 FAM161AQ3B820 660 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 CPLX2Q6PUV4 134 aaKnown RBP7.54□□□□□ -1.2
SCN1A-203ENST00000409050 ACBD3Q9H3P7 528 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 HOOK1Q9UJC3 728 aaKnown RBP7.54□□□□□ -1.2
SCN1A-203ENST00000409050 E9PSI1 815 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 PKD2Q13563 968 aa7.54□□□□□ -1.2
SCN1A-203ENST00000409050 A0A0G2JS52 829 aa7.53□□□□□ -1.2
SCN1A-203ENST00000409050 ITPRIPQ8IWB1 547 aa7.53□□□□□ -1.2
SCN1A-203ENST00000409050 CCDC47Q96A33 483 aaKnown RBP7.53□□□□□ -1.2
SCN1A-203ENST00000409050 MPHOSPH9Q99550 1183 aa7.53□□□□□ -1.2
SCN1A-203ENST00000409050 ISY1Q9ULR0 285 aaKnown RBP7.53□□□□□ -1.2
SCN1A-203ENST00000409050 RAB3GAP2Q9H2M9 1393 aa7.53□□□□□ -1.2
SCN1A-203ENST00000409050 A0A0U1RQG5 324 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-203ENST00000409050 REC8O95072 547 aa7.53□□□□□ -1.2
SCN1A-203ENST00000409050 TEX35Q5T0J7 233 aa7.53□□□□□ -1.2
SCN1A-203ENST00000409050 ZBED9Q6R2W3 1325 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms