RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 PREX2Q70Z35 1606 aa30.36■■■□□ 2.45
RTN4-207ENST00000402434 ADGRL1O94910 1474 aa30.35■■■□□ 2.45
RTN4-207ENST00000402434 FRMPD1Q5SYB0 1578 aa30.35■■■□□ 2.45
RTN4-207ENST00000402434 SCAPERQ9BY12 1400 aa30.34■■■□□ 2.45
RTN4-207ENST00000402434 GPATCH8Q9UKJ3 1502 aaKnown RBP30.34■■■□□ 2.45
RTN4-207ENST00000402434 CDC42BPAQ5VT25 1732 aa30.33■■■□□ 2.45
RTN4-207ENST00000402434 RICTORQ6R327 1708 aa30.31■■■□□ 2.44
RTN4-207ENST00000402434 CCNB3Q8WWL7 1395 aa30.3■■■□□ 2.44
RTN4-207ENST00000402434 LRRC9Q6ZRR7 1453 aa30.28■■■□□ 2.44
RTN4-207ENST00000402434 POGZQ7Z3K3 1410 aa30.26■■■□□ 2.44
RTN4-207ENST00000402434 KANK4Q5T7N3 995 aaPredicted RBP30.25■■■□□ 2.43
RTN4-207ENST00000402434 ZMYM4Q5VZL5 1548 aa30.23■■■□□ 2.43
RTN4-207ENST00000402434 CFDP1Q9UEE9 299 aaPredicted RBP30.23■■■□□ 2.43
RTN4-207ENST00000402434 NCOA2Q15596 1464 aa30.22■■■□□ 2.43
RTN4-207ENST00000402434 SUPT6HQ7KZ85 1726 aaKnown RBP30.22■■■□□ 2.43
RTN4-207ENST00000402434 APLP2Q06481 763 aa30.2■■■□□ 2.43
RTN4-207ENST00000402434 ABCC1P33527 1531 aa30.19■■■□□ 2.42
RTN4-207ENST00000402434 ZNF518AQ6AHZ1 1483 aa30.19■■■□□ 2.42
RTN4-207ENST00000402434 MAGI2Q86UL8 1455 aa30.19■■■□□ 2.42
RTN4-207ENST00000402434 ARHGEF12Q9NZN5 1544 aa30.18■■■□□ 2.42
RTN4-207ENST00000402434 AFAP1Q8N556 730 aa30.18■■■□□ 2.42
RTN4-207ENST00000402434 ZNF777Q9ULD5 760 aaPredicted RBP30.18■■■□□ 2.42
RTN4-207ENST00000402434 SAMD9LQ8IVG5 1584 aa30.16■■■□□ 2.42
RTN4-207ENST00000402434 KDM4FA0A1W2PPD8 638 aa30.16■■■□□ 2.42
RTN4-207ENST00000402434 KDM5CP41229 1560 aa30.14■■■□□ 2.42
RTN4-207ENST00000402434 ITSN2Q9NZM3 1697 aa30.14■■■□□ 2.41
RTN4-207ENST00000402434 KIAA1107Q9UPP5 1409 aa30.13■■■□□ 2.41
RTN4-207ENST00000402434 TRAPPC8Q9Y2L5 1435 aa30.13■■■□□ 2.41
RTN4-207ENST00000402434 ARHGEF40Q8TER5 1519 aa30.12■■■□□ 2.41
RTN4-207ENST00000402434 PLEKHH2Q8IVE3 1493 aa30.12■■■□□ 2.41
RTN4-207ENST00000402434 YEATS2Q9ULM3 1422 aa30.11■■■□□ 2.41
RTN4-207ENST00000402434 ZFYVE16Q7Z3T8 1539 aa30.1■■■□□ 2.41
RTN4-207ENST00000402434 ZNF644Q9H582 1327 aaPredicted RBP30.08■■■□□ 2.41
RTN4-207ENST00000402434 HNRNPMP52272 730 aaKnown RBP eCLIP30.07■■■□□ 2.47e-7■■■■□ 22.8
RTN4-207ENST00000402434 SYCP2Q9BX26 1530 aa30.07■■■□□ 2.4
RTN4-207ENST00000402434 MLH3Q9UHC1 1453 aa30.06■■■□□ 2.4
RTN4-207ENST00000402434 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
RTN4-207ENST00000402434 HECW2Q9P2P5 1572 aa30.02■■■□□ 2.4
RTN4-207ENST00000402434 ATP10AO60312 1499 aa30.01■■■□□ 2.39
RTN4-207ENST00000402434 MBD5Q9P267 1494 aa30.01■■■□□ 2.39
RTN4-207ENST00000402434 MYOM3Q5VTT5 1437 aa29.99■■■□□ 2.39
RTN4-207ENST00000402434 MIA2Q96PC5 1412 aa29.97■■■□□ 2.39
RTN4-207ENST00000402434 CAMSAP2Q08AD1 1489 aa29.96■■■□□ 2.39
RTN4-207ENST00000402434 ARID4BQ4LE39 1312 aaPredicted RBP29.96■■■□□ 2.39
RTN4-207ENST00000402434 MYT1LQ9UL68 1186 aa29.96■■■□□ 2.39
RTN4-207ENST00000402434 SPAG9O60271 1321 aaKnown RBP29.95■■■□□ 2.39
RTN4-207ENST00000402434 C9orf84Q5VXU9 1444 aa29.95■■■□□ 2.38
RTN4-207ENST00000402434 KIDINS220Q9ULH0 1771 aa29.94■■■□□ 2.38
RTN4-207ENST00000402434 DIP2CQ9Y2E4 1556 aa29.93■■■□□ 2.38
RTN4-207ENST00000402434 RSPH4AQ5TD94 716 aa29.93■■■□□ 2.38
RTN4-207ENST00000402434 SIGLEC1Q9BZZ2 1709 aa29.91■■■□□ 2.38
RTN4-207ENST00000402434 ABCA6Q8N139 1617 aa29.9■■■□□ 2.38
RTN4-207ENST00000402434 BCORL1Q5H9F3 1711 aa29.89■■■□□ 2.38
RTN4-207ENST00000402434 REREQ9P2R6 1566 aa29.88■■■□□ 2.37
RTN4-207ENST00000402434 ADAMTSL3P82987 1691 aa29.87■■■□□ 2.37
RTN4-207ENST00000402434 ATP7AQ04656 1500 aa29.87■■■□□ 2.37
RTN4-207ENST00000402434 INO80Q9ULG1 1556 aaPredicted RBP29.87■■■□□ 2.37
RTN4-207ENST00000402434 CCDC141Q6ZP82 1450 aa29.86■■■□□ 2.37
RTN4-207ENST00000402434 ARHGEF5Q12774 1597 aa29.85■■■□□ 2.37
RTN4-207ENST00000402434 RTEL1-TNFRSF6BF6WH68 1400 aa29.85■■■□□ 2.37
RTN4-207ENST00000402434 FGD6Q6ZV73 1430 aa29.82■■■□□ 2.36
RTN4-207ENST00000402434 AGLP35573 1532 aa29.8■■■□□ 2.36
RTN4-207ENST00000402434 TSPY4P0CV99 314 aa29.77■■■□□ 2.36
RTN4-207ENST00000402434 TSPY10P0CW01 314 aa29.77■■■□□ 2.36
RTN4-207ENST00000402434 PTPN23Q9H3S7 1636 aa29.77■■■□□ 2.36
RTN4-207ENST00000402434 TCOF1Q13428 1488 aaKnown RBP29.76■■■□□ 2.35
RTN4-207ENST00000402434 MADDQ8WXG6 1647 aa29.75■■■□□ 2.35
RTN4-207ENST00000402434 MLECQ14165 292 aa29.75■■■□□ 2.35
RTN4-207ENST00000402434 A2MP01023 1474 aa29.73■■■□□ 2.35
RTN4-207ENST00000402434 PTPRMP28827 1452 aa29.72■■■□□ 2.35
RTN4-207ENST00000402434 PLXNC1O60486 1568 aa29.71■■■□□ 2.35
RTN4-207ENST00000402434 ADGBQ8N7X0 1667 aa29.69■■■□□ 2.34
RTN4-207ENST00000402434 MAST1Q9Y2H9 1570 aa29.68■■■□□ 2.34
RTN4-207ENST00000402434 DHX29Q7Z478 1369 aaKnown RBP29.67■■■□□ 2.34
RTN4-207ENST00000402434 ABCC5O15440 1437 aa29.67■■■□□ 2.34
RTN4-207ENST00000402434 PPARGC1BQ86YN6 1023 aaKnown RBP29.67■■■□□ 2.34
RTN4-207ENST00000402434 RIMS1Q86UR5 1692 aaKnown RBP29.64■■■□□ 2.34
RTN4-207ENST00000402434 FER1L4A9Z1Z3 1794 aa29.63■■■□□ 2.33
RTN4-207ENST00000402434 DAPK1P53355 1430 aa29.62■■■□□ 2.33
RTN4-207ENST00000402434 SHANK2Q9UPX8 1470 aa29.62■■■□□ 2.33
RTN4-207ENST00000402434 DNMT1P26358 1616 aaKnown RBP29.62■■■□□ 2.33
RTN4-207ENST00000402434 FAM50AQ14320 339 aaKnown RBP29.58■■■□□ 2.33
RTN4-207ENST00000402434 CROCC2H7BZ55 1655 aa29.58■■■□□ 2.33
RTN4-207ENST00000402434 PPP6R1Q9UPN7 881 aa29.54■■■□□ 2.32
RTN4-207ENST00000402434 GGT6Q6P531 493 aa29.53■■■□□ 2.32
RTN4-207ENST00000402434 CNTLNQ9NXG0 1405 aa29.52■■■□□ 2.32
RTN4-207ENST00000402434 KIF3BO15066 747 aa29.52■■■□□ 2.32
RTN4-207ENST00000402434 ESF1Q9H501 851 aaKnown RBP29.52■■■□□ 2.32
RTN4-207ENST00000402434 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.5■■■□□ 2.31
RTN4-207ENST00000402434 KIF15Q9NS87 1388 aa29.48■■■□□ 2.31
RTN4-207ENST00000402434 DUOX2Q9NRD8 1548 aa29.48■■■□□ 2.31
RTN4-207ENST00000402434 CEBPAP49715 358 aaPredicted RBP29.48■■■□□ 2.31
RTN4-207ENST00000402434 RRP7BPQ9NSQ0 103 aa29.47■■■□□ 2.31
RTN4-207ENST00000402434 CHIC2Q9UKJ5 165 aa29.47■■■□□ 2.31
RTN4-207ENST00000402434 NCOA1Q15788 1441 aa29.47■■■□□ 2.31
RTN4-207ENST00000402434 ANKRD30AQ9BXX3 1397 aa29.46■■■□□ 2.31
RTN4-207ENST00000402434 PLPPR3Q6T4P5 718 aa29.44■■■□□ 2.3
RTN4-207ENST00000402434 ADGRL2O95490 1459 aa29.44■■■□□ 2.3
RTN4-207ENST00000402434 EIF2AK4Q9P2K8 1649 aaKnown RBP29.42■■■□□ 2.3
RTN4-207ENST00000402434 RRBP1Q9P2E9 1410 aaKnown RBP29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms