RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NBR1Q14596 966 aa28.76■■■□□ 2.19
CTCF-202ENST00000401394 UGGT2Q9NYU1 1516 aa28.74■■■□□ 2.19
CTCF-202ENST00000401394 SLC4A1APQ9BWU0 796 aaKnown RBP28.73■■■□□ 2.19
CTCF-202ENST00000401394 SUPT6HQ7KZ85 1726 aaKnown RBP28.72■■■□□ 2.19
CTCF-202ENST00000401394 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
CTCF-202ENST00000401394 NCOA1Q15788 1441 aa28.72■■■□□ 2.19
CTCF-202ENST00000401394 SAMD9Q5K651 1589 aa28.69■■■□□ 2.18
CTCF-202ENST00000401394 ZBED9Q6R2W3 1325 aa28.69■■■□□ 2.18
CTCF-202ENST00000401394 ABCA5Q8WWZ7 1642 aa28.67■■■□□ 2.18
CTCF-202ENST00000401394 EHBP1L1Q8N3D4 1523 aa28.67■■■□□ 2.18
CTCF-202ENST00000401394 ANKRD30BQ9BXX2 1392 aa28.63■■■□□ 2.17
CTCF-202ENST00000401394 SALL2Q9Y467 1007 aaPredicted RBP28.62■■■□□ 2.17
CTCF-202ENST00000401394 ARHGEF11O15085 1522 aa28.6■■■□□ 2.17
CTCF-202ENST00000401394 ZNF777Q9ULD5 760 aaPredicted RBP28.59■■■□□ 2.17
CTCF-202ENST00000401394 DEKP35659 375 aaKnown RBP28.58■■■□□ 2.17
CTCF-202ENST00000401394 TARBP1Q13395 1621 aaKnown RBP28.58■■■□□ 2.17
CTCF-202ENST00000401394 EPRSP07814 1512 aaKnown RBP28.58■■■□□ 2.17
CTCF-202ENST00000401394 MRC2Q9UBG0 1479 aa28.57■■■□□ 2.16
CTCF-202ENST00000401394 THOC2Q8NI27 1593 aaKnown RBP28.56■■■□□ 2.16
CTCF-202ENST00000401394 TCOF1Q13428 1488 aaKnown RBP28.54■■■□□ 2.16
CTCF-202ENST00000401394 HECW1Q76N89 1606 aa28.54■■■□□ 2.16
CTCF-202ENST00000401394 SPATA31E1Q6ZUB1 1445 aa28.53■■■□□ 2.16
CTCF-202ENST00000401394 CCDC136Q96JN2 1154 aa28.53■■■□□ 2.16
CTCF-202ENST00000401394 TEX14Q8IWB6 1497 aa28.52■■■□□ 2.16
CTCF-202ENST00000401394 ERICH6BQ5W0A0 696 aa28.51■■■□□ 2.15
CTCF-202ENST00000401394 RPRD2Q5VT52 1461 aaKnown RBP28.51■■■□□ 2.15
CTCF-202ENST00000401394 NOP58Q9Y2X3 529 aaKnown RBP28.5■■■□□ 2.15
CTCF-202ENST00000401394 GCC2Q8IWJ2 1684 aa28.49■■■□□ 2.15
CTCF-202ENST00000401394 ABCC5O15440 1437 aa28.49■■■□□ 2.15
CTCF-202ENST00000401394 DHX29Q7Z478 1369 aaKnown RBP28.48■■■□□ 2.15
CTCF-202ENST00000401394 KDM2AQ9Y2K7 1162 aa28.48■■■□□ 2.15
CTCF-202ENST00000401394 DAPK1P53355 1430 aa28.47■■■□□ 2.15
CTCF-202ENST00000401394 NUDCQ9Y266 331 aa28.45■■■□□ 2.14
CTCF-202ENST00000401394 PKD2Q13563 968 aa28.43■■■□□ 2.14
CTCF-202ENST00000401394 USP47Q96K76 1375 aa28.42■■■□□ 2.14
CTCF-202ENST00000401394 NPM2Q86SE8 214 aaKnown RBP28.41■■■□□ 2.14
CTCF-202ENST00000401394 SKAP1Q86WV1 359 aa28.41■■■□□ 2.14
CTCF-202ENST00000401394 PBRM1Q86U86 1689 aa28.39■■■□□ 2.14
CTCF-202ENST00000401394 TMC1Q8TDI8 760 aa28.39■■■□□ 2.14
CTCF-202ENST00000401394 PNISRQ8TF01 805 aaKnown RBP28.38■■■□□ 2.13
CTCF-202ENST00000401394 MIA2Q96PC5 1412 aa28.37■■■□□ 2.13
CTCF-202ENST00000401394 BCORL1Q5H9F3 1711 aa28.36■■■□□ 2.13
CTCF-202ENST00000401394 WDR62O43379 1518 aa28.36■■■□□ 2.13
CTCF-202ENST00000401394 SMG6Q86US8 1419 aaKnown RBP28.36■■■□□ 2.13
CTCF-202ENST00000401394 CFDP1Q9UEE9 299 aaPredicted RBP28.34■■■□□ 2.13
CTCF-202ENST00000401394 PRG4Q92954 1404 aaPredicted RBP28.33■■■□□ 2.13
CTCF-202ENST00000401394 PZPP20742 1482 aa28.32■■■□□ 2.12
CTCF-202ENST00000401394 IFT140Q96RY7 1462 aa28.32■■■□□ 2.12
CTCF-202ENST00000401394 EXOC6Q8TAG9 804 aa28.32■■■□□ 2.12
CTCF-202ENST00000401394 ST20-MTHFSA0A0A6YYL1 179 aa28.31■■■□□ 2.12
CTCF-202ENST00000401394 CARD11Q9BXL7 1154 aa28.3■■■□□ 2.12
CTCF-202ENST00000401394 IQGAP2Q13576 1575 aa28.29■■■□□ 2.12
CTCF-202ENST00000401394 ERCC6Q03468 1493 aa28.27■■■□□ 2.12
CTCF-202ENST00000401394 ADAMTS12P58397 1594 aa28.27■■■□□ 2.12
CTCF-202ENST00000401394 IPO9Q96P70 1041 aaKnown RBP28.25■■■□□ 2.11
CTCF-202ENST00000401394 RNF123Q5XPI4 1314 aa28.25■■■□□ 2.11
CTCF-202ENST00000401394 ROCK1Q13464 1354 aa28.24■■■□□ 2.11
CTCF-202ENST00000401394 ANP32AP39687 249 aaKnown RBP28.23■■■□□ 2.11
CTCF-202ENST00000401394 CDCA7LQ96GN5 454 aa28.23■■■□□ 2.11
CTCF-202ENST00000401394 PLIN1O60240 522 aa28.23■■■□□ 2.11
CTCF-202ENST00000401394 NUP153P49790 1475 aaKnown RBP28.22■■■□□ 2.11
CTCF-202ENST00000401394 ZNF608Q9ULD9 1512 aaPredicted RBP28.22■■■□□ 2.11
CTCF-202ENST00000401394 DCAF11Q8TEB1 546 aa28.22■■■□□ 2.11
CTCF-202ENST00000401394 ZBTB47Q9UFB7 747 aaPredicted RBP28.2■■■□□ 2.11
CTCF-202ENST00000401394 LAS1LQ9Y4W2 734 aaKnown RBP28.2■■■□□ 2.11
CTCF-202ENST00000401394 FBLN2P98095 1184 aa28.19■■■□□ 2.1
CTCF-202ENST00000401394 DNMT1P26358 1616 aaKnown RBP28.17■■■□□ 2.1
CTCF-202ENST00000401394 KIAA1107Q9UPP5 1409 aa28.15■■■□□ 2.1
CTCF-202ENST00000401394 RGL3Q3MIN7 710 aa28.14■■■□□ 2.1
CTCF-202ENST00000401394 NUP155O75694 1391 aa28.14■■■□□ 2.1
CTCF-202ENST00000401394 RRP1P56182 461 aaKnown RBP28.13■■■□□ 2.09
CTCF-202ENST00000401394 CAMSAP2Q08AD1 1489 aa28.13■■■□□ 2.09
CTCF-202ENST00000401394 MBD5Q9P267 1494 aa28.13■■■□□ 2.09
CTCF-202ENST00000401394 DISP1Q96F81 1524 aa28.12■■■□□ 2.09
CTCF-202ENST00000401394 PLB1Q6P1J6 1458 aa28.11■■■□□ 2.09
CTCF-202ENST00000401394 CC2D1BQ5T0F9 858 aaKnown RBP28.1■■■□□ 2.09
CTCF-202ENST00000401394 NBPF1Q3BBV0 1214 aa28.09■■■□□ 2.09
CTCF-202ENST00000401394 RTN4Q9NQC3 1192 aaKnown RBP28.09■■■□□ 2.09
CTCF-202ENST00000401394 RCAN3Q9UKA8 241 aa28.09■■■□□ 2.09
CTCF-202ENST00000401394 EIF4G3O43432 1585 aaKnown RBP28.08■■■□□ 2.09
CTCF-202ENST00000401394 HNRNPMP52272 730 aaKnown RBP eCLIP28.06■■■□□ 2.08
CTCF-202ENST00000401394 KDM5CP41229 1560 aa28.06■■■□□ 2.08
CTCF-202ENST00000401394 GPATCH8Q9UKJ3 1502 aaKnown RBP28.05■■■□□ 2.08
CTCF-202ENST00000401394 ANKRD50Q9ULJ7 1429 aa28.04■■■□□ 2.08
CTCF-202ENST00000401394 IL27Q8NEV9 243 aa28.04■■■□□ 2.08
CTCF-202ENST00000401394 PDE4AP27815 886 aa28.03■■■□□ 2.08
CTCF-202ENST00000401394 RTL5Q5HYW3 569 aaPredicted RBP28.03■■■□□ 2.08
CTCF-202ENST00000401394 MYBBP1AQ9BQG0 1328 aaKnown RBP28.03■■■□□ 2.08
CTCF-202ENST00000401394 KIF14Q15058 1648 aa28.02■■■□□ 2.08
CTCF-202ENST00000401394 KIF15Q9NS87 1388 aa28.02■■■□□ 2.08
CTCF-202ENST00000401394 POLR1AO95602 1720 aaPredicted RBP28.02■■■□□ 2.08
CTCF-202ENST00000401394 LRPPRCP42704 1394 aaKnown RBP28■■■□□ 2.07
CTCF-202ENST00000401394 SLC4A3P48751 1232 aa27.99■■■□□ 2.07
CTCF-202ENST00000401394 C20orf194Q5TEA3 1177 aa27.98■■■□□ 2.07
CTCF-202ENST00000401394 KIAA0556O60303 1618 aa27.97■■■□□ 2.07
CTCF-202ENST00000401394 TROQ12816 1431 aaPredicted RBP27.97■■■□□ 2.07
CTCF-202ENST00000401394 ROCK2O75116 1388 aaKnown RBP27.97■■■□□ 2.07
CTCF-202ENST00000401394 ANKRD30AQ9BXX3 1397 aa27.97■■■□□ 2.07
CTCF-202ENST00000401394 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.96■■■□□ 2.076e-7■■■□□ 15
CTCF-202ENST00000401394 GRIN2AQ12879 1464 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms