RNA–Protein interactions for RNA: ENST00000400946.2

LINC01139-201, Transcript of long intergenic non-protein coding RNA 1139, humanhuman

TSL 1 (best) BASIC

Gene LINC01139, Length 1,537 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01139-201ENST00000400946 RIMBP3BA6NNM3 1639 aa12.51□□□□□ -0.41
LINC01139-201ENST00000400946 RIMBP3Q9UFD9 1639 aa12.51□□□□□ -0.41
LINC01139-201ENST00000400946 MIA2Q96PC5 1412 aa12.51□□□□□ -0.41
LINC01139-201ENST00000400946 SLC4A2P04920 1241 aa12.5□□□□□ -0.41
LINC01139-201ENST00000400946 CLASP1Q7Z460 1538 aa12.5□□□□□ -0.41
LINC01139-201ENST00000400946 PPP1R15AO75807 674 aaPredicted RBP12.49□□□□□ -0.41
LINC01139-201ENST00000400946 YTHDC1Q96MU7 727 aaKnown RBP12.49□□□□□ -0.41
LINC01139-201ENST00000400946 GCC2Q8IWJ2 1684 aa12.49□□□□□ -0.41
LINC01139-201ENST00000400946 ATP1B4Q9UN42 357 aaPredicted RBP12.48□□□□□ -0.41
LINC01139-201ENST00000400946 NAIPQ13075 1403 aa12.48□□□□□ -0.41
LINC01139-201ENST00000400946 TRHP20396 242 aaPredicted RBP12.47□□□□□ -0.41
LINC01139-201ENST00000400946 ZNF219Q9P2Y4 722 aaPredicted RBP12.47□□□□□ -0.41
LINC01139-201ENST00000400946 GRIN2AQ12879 1464 aa12.47□□□□□ -0.41
LINC01139-201ENST00000400946 EPRSP07814 1512 aaKnown RBP12.45□□□□□ -0.42
LINC01139-201ENST00000400946 NUP160Q12769 1436 aa12.43□□□□□ -0.42
LINC01139-201ENST00000400946 PTPRKQ15262 1439 aa12.43□□□□□ -0.42
LINC01139-201ENST00000400946 KIAA0586Q9BVV6 1533 aa12.43□□□□□ -0.42
LINC01139-201ENST00000400946 TONSLQ96HA7 1378 aa12.43□□□□□ -0.42
LINC01139-201ENST00000400946 CCER2I3L3R5 266 aa12.42□□□□□ -0.42
LINC01139-201ENST00000400946 CEP170Q5SW79 1584 aa12.42□□□□□ -0.42
LINC01139-201ENST00000400946 MYT1Q01538 1121 aa12.42□□□□□ -0.42
LINC01139-201ENST00000400946 MAGI3Q5TCQ9 1506 aa12.41□□□□□ -0.42
LINC01139-201ENST00000400946 SIN3AQ96ST3 1273 aa12.41□□□□□ -0.42
LINC01139-201ENST00000400946 ABCB7O75027 752 aa12.4□□□□□ -0.42
LINC01139-201ENST00000400946 ROCK1Q13464 1354 aa12.4□□□□□ -0.42
LINC01139-201ENST00000400946 CYB5RLQ6IPT4 315 aa12.39□□□□□ -0.43
LINC01139-201ENST00000400946 CHRDL2Q6WN34 429 aa12.38□□□□□ -0.43
LINC01139-201ENST00000400946 KIAA0556O60303 1618 aa12.38□□□□□ -0.43
LINC01139-201ENST00000400946 SAMD1Q6SPF0 538 aaPredicted RBP12.35□□□□□ -0.43
LINC01139-201ENST00000400946 DNMT1P26358 1616 aaKnown RBP12.35□□□□□ -0.43
LINC01139-201ENST00000400946 SHROOM2Q13796 1616 aa12.35□□□□□ -0.43
LINC01139-201ENST00000400946 KDM5BQ9UGL1 1544 aa12.34□□□□□ -0.43
LINC01139-201ENST00000400946 RAPGEF6Q8TEU7 1601 aa12.34□□□□□ -0.43
LINC01139-201ENST00000400946 CDK11AQ9UQ88 783 aaPredicted RBP12.33□□□□□ -0.44
LINC01139-201ENST00000400946 DISP1Q96F81 1524 aa12.33□□□□□ -0.44
LINC01139-201ENST00000400946 DAXXQ9UER7 740 aaPredicted RBP12.32□□□□□ -0.44
LINC01139-201ENST00000400946 ITSN2Q9NZM3 1697 aa12.32□□□□□ -0.44
LINC01139-201ENST00000400946 ERCC6L2Q5T890 1561 aa12.32□□□□□ -0.44
LINC01139-201ENST00000400946 ANP32CO43423 234 aa12.32□□□□□ -0.44
LINC01139-201ENST00000400946 DDX10Q13206 875 aaKnown RBP12.32□□□□□ -0.44
LINC01139-201ENST00000400946 JPH4Q96JJ6 628 aa12.32□□□□□ -0.44
LINC01139-201ENST00000400946 ADCY10Q96PN6 1610 aa12.31□□□□□ -0.44
LINC01139-201ENST00000400946 SUPT16HQ9Y5B9 1047 aaKnown RBP12.31□□□□□ -0.44
LINC01139-201ENST00000400946 CDK13Q14004 1512 aaKnown RBP12.3□□□□□ -0.44
LINC01139-201ENST00000400946 DAPK1P53355 1430 aa12.3□□□□□ -0.44
LINC01139-201ENST00000400946 NUP153P49790 1475 aaKnown RBP12.29□□□□□ -0.44
LINC01139-201ENST00000400946 DENND4BO75064 1496 aaPredicted RBP12.29□□□□□ -0.44
LINC01139-201ENST00000400946 TROQ12816 1431 aaPredicted RBP12.28□□□□□ -0.44
LINC01139-201ENST00000400946 PRG4Q92954 1404 aaPredicted RBP12.28□□□□□ -0.44
LINC01139-201ENST00000400946 RBM42Q9BTD8 480 aaKnown RBP12.27□□□□□ -0.44
LINC01139-201ENST00000400946 ADGBQ8N7X0 1667 aa12.26□□□□□ -0.45
LINC01139-201ENST00000400946 ABCC5O15440 1437 aa12.26□□□□□ -0.45
LINC01139-201ENST00000400946 ADGRL2O95490 1459 aa12.26□□□□□ -0.45
LINC01139-201ENST00000400946 RPRD2Q5VT52 1461 aaKnown RBP12.26□□□□□ -0.45
LINC01139-201ENST00000400946 MPHOSPH9Q99550 1183 aa12.26□□□□□ -0.45
LINC01139-201ENST00000400946 CARMIL2Q6F5E8 1435 aa12.25□□□□□ -0.45
LINC01139-201ENST00000400946 POLR1AO95602 1720 aaPredicted RBP12.23□□□□□ -0.45
LINC01139-201ENST00000400946 KDM6BO15054 1643 aa12.23□□□□□ -0.45
LINC01139-201ENST00000400946 ANKRD30BQ9BXX2 1392 aa12.23□□□□□ -0.45
LINC01139-201ENST00000400946 RRP7BPQ9NSQ0 103 aa12.22□□□□□ -0.45
LINC01139-201ENST00000400946 CROCC2H7BZ55 1655 aa12.22□□□□□ -0.45
LINC01139-201ENST00000400946 EIF4G2P78344 907 aaKnown RBP eCLIP12.21□□□□□ -0.45
LINC01139-201ENST00000400946 TRIM52Q96A61 297 aa12.21□□□□□ -0.46
LINC01139-201ENST00000400946 SHANK2Q9UPX8 1470 aa12.2□□□□□ -0.46
LINC01139-201ENST00000400946 TEX14Q8IWB6 1497 aa12.19□□□□□ -0.46
LINC01139-201ENST00000400946 GPATCH8Q9UKJ3 1502 aaKnown RBP12.19□□□□□ -0.46
LINC01139-201ENST00000400946 CAMSAP2Q08AD1 1489 aa12.18□□□□□ -0.46
LINC01139-201ENST00000400946 ABCA8O94911 1581 aa12.18□□□□□ -0.46
LINC01139-201ENST00000400946 NCOA1Q15788 1441 aa12.18□□□□□ -0.46
LINC01139-201ENST00000400946 KCNH8Q96L42 1107 aa12.17□□□□□ -0.46
LINC01139-201ENST00000400946 CNTLNQ9NXG0 1405 aa12.17□□□□□ -0.46
LINC01139-201ENST00000400946 NEFLP07196 543 aa12.16□□□□□ -0.46
LINC01139-201ENST00000400946 CHIC2Q9UKJ5 165 aa12.16□□□□□ -0.46
LINC01139-201ENST00000400946 HSPA5P11021 654 aaKnown RBP12.16□□□□□ -0.46
LINC01139-201ENST00000400946 KIF14Q15058 1648 aa12.15□□□□□ -0.46
LINC01139-201ENST00000400946 KDM5DQ9BY66 1539 aa12.15□□□□□ -0.46
LINC01139-201ENST00000400946 PZPP20742 1482 aa12.15□□□□□ -0.46
LINC01139-201ENST00000400946 ANKRD30AQ9BXX3 1397 aa12.15□□□□□ -0.46
LINC01139-201ENST00000400946 ARID4BQ4LE39 1312 aaPredicted RBP12.15□□□□□ -0.46
LINC01139-201ENST00000400946 L3MBTL2Q969R5 705 aa12.15□□□□□ -0.46
LINC01139-201ENST00000400946 SPATA31E1Q6ZUB1 1445 aa12.14□□□□□ -0.47
LINC01139-201ENST00000400946 KIAA1107Q9UPP5 1409 aa12.14□□□□□ -0.47
LINC01139-201ENST00000400946 WASHC2AQ641Q2 1341 aa12.14□□□□□ -0.47
LINC01139-201ENST00000400946 ERICH6BQ5W0A0 696 aa12.14□□□□□ -0.47
LINC01139-201ENST00000400946 CFDP1Q9UEE9 299 aaPredicted RBP12.14□□□□□ -0.47
LINC01139-201ENST00000400946 ARHGEF5Q12774 1597 aa12.14□□□□□ -0.47
LINC01139-201ENST00000400946 MBD5Q9P267 1494 aa12.13□□□□□ -0.47
LINC01139-201ENST00000400946 CCDC7Q96M83 1385 aa12.13□□□□□ -0.47
LINC01139-201ENST00000400946 MYCNP04198 464 aaPredicted RBP12.13□□□□□ -0.47
LINC01139-201ENST00000400946 ABCC10Q5T3U5 1492 aa12.13□□□□□ -0.47
LINC01139-201ENST00000400946 PLB1Q6P1J6 1458 aa12.12□□□□□ -0.47
LINC01139-201ENST00000400946 PTPRGP23470 1445 aa12.12□□□□□ -0.47
LINC01139-201ENST00000400946 CDC42BPAQ5VT25 1732 aa12.12□□□□□ -0.47
LINC01139-201ENST00000400946 SLC4A1APQ9BWU0 796 aaKnown RBP12.11□□□□□ -0.47
LINC01139-201ENST00000400946 ARHGEF12Q9NZN5 1544 aa12.11□□□□□ -0.47
LINC01139-201ENST00000400946 HIRIP3Q9BW71 556 aaPredicted RBP12.11□□□□□ -0.47
LINC01139-201ENST00000400946 PLEKHD1A6NEE1 506 aa12.1□□□□□ -0.47
LINC01139-201ENST00000400946 RSPH4AQ5TD94 716 aa12.1□□□□□ -0.47
LINC01139-201ENST00000400946 UHRF1BP1Q6BDS2 1440 aa12.1□□□□□ -0.47
LINC01139-201ENST00000400946 ATP10BO94823 1461 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms