RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 PELP1Q8IZL8 1130 aaKnown RBP17.48■□□□□ 0.39
SKA3-203ENST00000400018 RAB3GAP2Q9H2M9 1393 aa17.48■□□□□ 0.39
SKA3-203ENST00000400018 ARHGAP5Q13017 1502 aa17.48■□□□□ 0.39
SKA3-203ENST00000400018 FAM69CQ0P6D2 419 aa17.48■□□□□ 0.39
SKA3-203ENST00000400018 AFAP1Q8N556 730 aa17.48■□□□□ 0.39
SKA3-203ENST00000400018 CDC42BPBQ9Y5S2 1711 aa17.46■□□□□ 0.39
SKA3-203ENST00000400018 ABCC5O15440 1437 aa17.45■□□□□ 0.38
SKA3-203ENST00000400018 HRCP23327 699 aa17.44■□□□□ 0.38
SKA3-203ENST00000400018 MYT1LQ9UL68 1186 aa17.44■□□□□ 0.38
SKA3-203ENST00000400018 DAPK1P53355 1430 aa17.42■□□□□ 0.38
SKA3-203ENST00000400018 ARHGEF12Q9NZN5 1544 aa17.42■□□□□ 0.38
SKA3-203ENST00000400018 KDM6BO15054 1643 aa17.42■□□□□ 0.38
SKA3-203ENST00000400018 FOXD1Q16676 465 aa17.41■□□□□ 0.38
SKA3-203ENST00000400018 SAMD9LQ8IVG5 1584 aa17.41■□□□□ 0.38
SKA3-203ENST00000400018 MIA2Q96PC5 1412 aa17.41■□□□□ 0.38
SKA3-203ENST00000400018 SYCP2Q9BX26 1530 aa17.4■□□□□ 0.38
SKA3-203ENST00000400018 TCOF1Q13428 1488 aaKnown RBP17.4■□□□□ 0.38
SKA3-203ENST00000400018 RAPGEF3O95398 923 aa17.39■□□□□ 0.37
SKA3-203ENST00000400018 TRIM52Q96A61 297 aa17.39■□□□□ 0.37
SKA3-203ENST00000400018 EFCAB2Q5VUJ9 269 aa17.38■□□□□ 0.37
SKA3-203ENST00000400018 SETD5Q9C0A6 1442 aa17.38■□□□□ 0.37
SKA3-203ENST00000400018 TSPOAP1O95153 1857 aa17.38■□□□□ 0.37
SKA3-203ENST00000400018 PLCH2O75038 1416 aa17.37■□□□□ 0.37
SKA3-203ENST00000400018 TRAPPC8Q9Y2L5 1435 aa17.37■□□□□ 0.37
SKA3-203ENST00000400018 CD109Q6YHK3 1445 aa17.37■□□□□ 0.37
SKA3-203ENST00000400018 TRHP20396 242 aaPredicted RBP17.37■□□□□ 0.37
SKA3-203ENST00000400018 PREX2Q70Z35 1606 aa17.36■□□□□ 0.37
SKA3-203ENST00000400018 ITSN2Q9NZM3 1697 aa17.36■□□□□ 0.37
SKA3-203ENST00000400018 MYO5CQ9NQX4 1742 aa17.36■□□□□ 0.37
SKA3-203ENST00000400018 NAIPQ13075 1403 aa17.36■□□□□ 0.37
SKA3-203ENST00000400018 TSPY4P0CV99 314 aa17.35■□□□□ 0.37
SKA3-203ENST00000400018 TSPY10P0CW01 314 aa17.35■□□□□ 0.37
SKA3-203ENST00000400018 FANCAO15360 1455 aa17.34■□□□□ 0.37
SKA3-203ENST00000400018 MBD5Q9P267 1494 aa17.34■□□□□ 0.37
SKA3-203ENST00000400018 SIN3AQ96ST3 1273 aa17.34■□□□□ 0.37
SKA3-203ENST00000400018 DHX57Q6P158 1386 aaKnown RBP17.33■□□□□ 0.37
SKA3-203ENST00000400018 NEUROD1Q13562 356 aa17.32■□□□□ 0.36
SKA3-203ENST00000400018 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.32■□□□□ 0.369e-6■■■□□ 18.9
SKA3-203ENST00000400018 DNMT1P26358 1616 aaKnown RBP17.31■□□□□ 0.36
SKA3-203ENST00000400018 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.31■□□□□ 0.36
SKA3-203ENST00000400018 SCAPERQ9BY12 1400 aa17.31■□□□□ 0.36
SKA3-203ENST00000400018 C9orf84Q5VXU9 1444 aa17.3■□□□□ 0.36
SKA3-203ENST00000400018 ABCA9Q8IUA7 1624 aa17.28■□□□□ 0.36
SKA3-203ENST00000400018 HFM1A2PYH4 1435 aa17.28■□□□□ 0.36
SKA3-203ENST00000400018 NCOA1Q15788 1441 aa17.27■□□□□ 0.36
SKA3-203ENST00000400018 ADGRL1O94910 1474 aa17.27■□□□□ 0.36
SKA3-203ENST00000400018 AKNAQ7Z591 1439 aa17.27■□□□□ 0.36
SKA3-203ENST00000400018 SPAG9O60271 1321 aaKnown RBP17.24■□□□□ 0.35
SKA3-203ENST00000400018 MAPKBP1O60336 1514 aa17.24■□□□□ 0.35
SKA3-203ENST00000400018 KIF15Q9NS87 1388 aa17.24■□□□□ 0.35
SKA3-203ENST00000400018 CCDC141Q6ZP82 1450 aa17.24■□□□□ 0.35
SKA3-203ENST00000400018 DIP2BQ9P265 1576 aa17.23■□□□□ 0.35
SKA3-203ENST00000400018 ABCC1P33527 1531 aa17.22■□□□□ 0.35
SKA3-203ENST00000400018 ANKRD30AQ9BXX3 1397 aa17.21■□□□□ 0.35
SKA3-203ENST00000400018 CROCC2H7BZ55 1655 aa17.19■□□□□ 0.34
SKA3-203ENST00000400018 ANKRD50Q9ULJ7 1429 aa17.19■□□□□ 0.34
SKA3-203ENST00000400018 PLEKHH2Q8IVE3 1493 aa17.18■□□□□ 0.34
SKA3-203ENST00000400018 SLC4A1APQ9BWU0 796 aaKnown RBP17.18■□□□□ 0.34
SKA3-203ENST00000400018 MPHOSPH9Q99550 1183 aa17.18■□□□□ 0.34
SKA3-203ENST00000400018 COL17A1Q9UMD9 1497 aaPredicted RBP17.16■□□□□ 0.34
SKA3-203ENST00000400018 KIF13AQ9H1H9 1805 aa17.16■□□□□ 0.34
SKA3-203ENST00000400018 DENND4BO75064 1496 aaPredicted RBP17.16■□□□□ 0.34
SKA3-203ENST00000400018 KIAA1107Q9UPP5 1409 aa17.15■□□□□ 0.34
SKA3-203ENST00000400018 NUP155O75694 1391 aa17.15■□□□□ 0.34
SKA3-203ENST00000400018 KIF3BO15066 747 aa17.14■□□□□ 0.33
SKA3-203ENST00000400018 ROCK1Q13464 1354 aa17.14■□□□□ 0.33
SKA3-203ENST00000400018 MAP3K4Q9Y6R4 1608 aa17.14■□□□□ 0.33
SKA3-203ENST00000400018 ARHGEF5Q12774 1597 aa17.13■□□□□ 0.33
SKA3-203ENST00000400018 YEATS2Q9ULM3 1422 aa17.13■□□□□ 0.33
SKA3-203ENST00000400018 GGT6Q6P531 493 aa17.12■□□□□ 0.33
SKA3-203ENST00000400018 GCC2Q8IWJ2 1684 aa17.12■□□□□ 0.33
SKA3-203ENST00000400018 PKD2Q13563 968 aa17.12■□□□□ 0.33
SKA3-203ENST00000400018 MLECQ14165 292 aa17.12■□□□□ 0.33
SKA3-203ENST00000400018 PPRC1Q5VV67 1664 aaKnown RBP17.11■□□□□ 0.33
SKA3-203ENST00000400018 ADGBQ8N7X0 1667 aa17.11■□□□□ 0.33
SKA3-203ENST00000400018 ADGRL2O95490 1459 aa17.1■□□□□ 0.33
SKA3-203ENST00000400018 RSPH4AQ5TD94 716 aa17.1■□□□□ 0.33
SKA3-203ENST00000400018 POGZQ7Z3K3 1410 aa17.08■□□□□ 0.33
SKA3-203ENST00000400018 ZFYVE16Q7Z3T8 1539 aa17.08■□□□□ 0.33
SKA3-203ENST00000400018 SHANK2Q9UPX8 1470 aa17.07■□□□□ 0.32
SKA3-203ENST00000400018 PLPPR3Q6T4P5 718 aa17.07■□□□□ 0.32
SKA3-203ENST00000400018 SENP3Q9H4L4 574 aaPredicted RBP17.07■□□□□ 0.32
SKA3-203ENST00000400018 ATP7AQ04656 1500 aa17.07■□□□□ 0.32
SKA3-203ENST00000400018 PZPP20742 1482 aa17.06■□□□□ 0.32
SKA3-203ENST00000400018 KIDINS220Q9ULH0 1771 aa17.05■□□□□ 0.32
SKA3-203ENST00000400018 ARAP3Q8WWN8 1544 aa17.05■□□□□ 0.32
SKA3-203ENST00000400018 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
SKA3-203ENST00000400018 GLI2P10070 1586 aa17.04■□□□□ 0.32
SKA3-203ENST00000400018 HIRIP3Q9BW71 556 aaPredicted RBP17.04■□□□□ 0.32
SKA3-203ENST00000400018 NEO1Q92859 1461 aa17.01■□□□□ 0.31
SKA3-203ENST00000400018 FRMPD1Q5SYB0 1578 aa17.01■□□□□ 0.31
SKA3-203ENST00000400018 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
SKA3-203ENST00000400018 INO80Q9ULG1 1556 aaPredicted RBP17■□□□□ 0.31
SKA3-203ENST00000400018 CFAP65Q6ZU64 1925 aaKnown RBP16.99■□□□□ 0.31
SKA3-203ENST00000400018 ABCA6Q8N139 1617 aa16.99■□□□□ 0.31
SKA3-203ENST00000400018 RGL3Q3MIN7 710 aa16.98■□□□□ 0.31
SKA3-203ENST00000400018 ZNF326Q5BKZ1 582 aaKnown RBP16.98■□□□□ 0.31
SKA3-203ENST00000400018 RICTORQ6R327 1708 aa16.98■□□□□ 0.31
SKA3-203ENST00000400018 MAST1Q9Y2H9 1570 aa16.98■□□□□ 0.31
SKA3-203ENST00000400018 DHX29Q7Z478 1369 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms