RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 HECW2Q9P2P5 1572 aa14.68□□□□□ -0.06
CAPN3-208ENST00000397204 EEA1Q15075 1411 aa14.66□□□□□ -0.06
CAPN3-208ENST00000397204 NEO1Q92859 1461 aa14.66□□□□□ -0.06
CAPN3-208ENST00000397204 RANGAP1P46060 587 aaPredicted RBP14.65□□□□□ -0.06
CAPN3-208ENST00000397204 ABCA9Q8IUA7 1624 aa14.65□□□□□ -0.06
CAPN3-208ENST00000397204 SAMD9Q5K651 1589 aa14.64□□□□□ -0.07
CAPN3-208ENST00000397204 POLA2Q14181 598 aa14.63□□□□□ -0.07
CAPN3-208ENST00000397204 RAPGEF6Q8TEU7 1601 aa14.62□□□□□ -0.07
CAPN3-208ENST00000397204 NUP153P49790 1475 aaKnown RBP14.62□□□□□ -0.07
CAPN3-208ENST00000397204 ARID4BQ4LE39 1312 aaPredicted RBP14.62□□□□□ -0.07
CAPN3-208ENST00000397204 FHOD3Q2V2M9 1422 aa14.59□□□□□ -0.07
CAPN3-208ENST00000397204 KIF21BO75037 1637 aa14.59□□□□□ -0.07
CAPN3-208ENST00000397204 PTPRMP28827 1452 aa14.58□□□□□ -0.08
CAPN3-208ENST00000397204 AKNAQ7Z591 1439 aa14.57□□□□□ -0.08
CAPN3-208ENST00000397204 DENND4BO75064 1496 aaPredicted RBP14.57□□□□□ -0.08
CAPN3-208ENST00000397204 FBXO41Q8TF61 875 aa14.55□□□□□ -0.08
CAPN3-208ENST00000397204 ADAMTSL3P82987 1691 aa14.54□□□□□ -0.08
CAPN3-208ENST00000397204 FANCAO15360 1455 aa14.53□□□□□ -0.08
CAPN3-208ENST00000397204 UBTFP17480 764 aaKnown RBP14.51□□□□□ -0.09
CAPN3-208ENST00000397204 CDK11AQ9UQ88 783 aaPredicted RBP14.51□□□□□ -0.09
CAPN3-208ENST00000397204 EFCAB5A4FU69 1503 aa14.51□□□□□ -0.09
CAPN3-208ENST00000397204 POGZQ7Z3K3 1410 aa14.5□□□□□ -0.09
CAPN3-208ENST00000397204 EFCAB2Q5VUJ9 269 aa14.5□□□□□ -0.09
CAPN3-208ENST00000397204 FRMPD1Q5SYB0 1578 aa14.49□□□□□ -0.09
CAPN3-208ENST00000397204 ATP1B4Q9UN42 357 aaPredicted RBP14.49□□□□□ -0.09
CAPN3-208ENST00000397204 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.49□□□□□ -0.09
CAPN3-208ENST00000397204 PLCH2O75038 1416 aa14.49□□□□□ -0.09
CAPN3-208ENST00000397204 BCORL1Q5H9F3 1711 aa14.48□□□□□ -0.09
CAPN3-208ENST00000397204 MAGI2Q86UL8 1455 aa14.48□□□□□ -0.09
CAPN3-208ENST00000397204 SCAPERQ9BY12 1400 aa14.47□□□□□ -0.09
CAPN3-208ENST00000397204 FMN1Q68DA7 1419 aa14.45□□□□□ -0.1
CAPN3-208ENST00000397204 CFAP74Q9C0B2 1584 aa14.44□□□□□ -0.1
CAPN3-208ENST00000397204 YEATS2Q9ULM3 1422 aa14.44□□□□□ -0.1
CAPN3-208ENST00000397204 MLECQ14165 292 aa14.44□□□□□ -0.1
CAPN3-208ENST00000397204 ARHGEF40Q8TER5 1519 aa14.44□□□□□ -0.1
CAPN3-208ENST00000397204 MADDQ8WXG6 1647 aa14.44□□□□□ -0.1
CAPN3-208ENST00000397204 LMTK3Q96Q04 1460 aa14.44□□□□□ -0.1
CAPN3-208ENST00000397204 PCF11O94913 1555 aaKnown RBP14.43□□□□□ -0.1
CAPN3-208ENST00000397204 ZMYM4Q5VZL5 1548 aa14.43□□□□□ -0.1
CAPN3-208ENST00000397204 RICTORQ6R327 1708 aa14.43□□□□□ -0.1
CAPN3-208ENST00000397204 CDK13Q14004 1512 aaKnown RBP14.42□□□□□ -0.1
CAPN3-208ENST00000397204 HSPA2P54652 639 aa14.42□□□□□ -0.1
CAPN3-208ENST00000397204 ZFYVE16Q7Z3T8 1539 aa14.41□□□□□ -0.1
CAPN3-208ENST00000397204 TTC37Q6PGP7 1564 aa14.41□□□□□ -0.1
CAPN3-208ENST00000397204 ATP10AO60312 1499 aa14.4□□□□□ -0.1
CAPN3-208ENST00000397204 ARHGAP35Q9NRY4 1499 aa14.38□□□□□ -0.11
CAPN3-208ENST00000397204 HECW1Q76N89 1606 aa14.38□□□□□ -0.11
CAPN3-208ENST00000397204 AFAP1Q8N556 730 aa14.38□□□□□ -0.11
CAPN3-208ENST00000397204 TROQ12816 1431 aaPredicted RBP14.36□□□□□ -0.11
CAPN3-208ENST00000397204 RIMS1Q86UR5 1692 aaKnown RBP14.36□□□□□ -0.11
CAPN3-208ENST00000397204 MYT1LQ9UL68 1186 aa14.35□□□□□ -0.11
CAPN3-208ENST00000397204 CLIP1P30622 1438 aa14.34□□□□□ -0.11
CAPN3-208ENST00000397204 C9orf84Q5VXU9 1444 aa14.34□□□□□ -0.11
CAPN3-208ENST00000397204 CEBPAP49715 358 aaPredicted RBP14.34□□□□□ -0.11
CAPN3-208ENST00000397204 CERKQ8TCT0 537 aa14.34□□□□□ -0.11
CAPN3-208ENST00000397204 ZNF518AQ6AHZ1 1483 aa14.33□□□□□ -0.12
CAPN3-208ENST00000397204 ZBTB12Q9Y330 459 aaPredicted RBP14.31□□□□□ -0.12
CAPN3-208ENST00000397204 ARHGEF12Q9NZN5 1544 aa14.31□□□□□ -0.12
CAPN3-208ENST00000397204 ARHGAP5Q13017 1502 aa14.3□□□□□ -0.12
CAPN3-208ENST00000397204 SIGLEC1Q9BZZ2 1709 aa14.29□□□□□ -0.12
CAPN3-208ENST00000397204 KIF14Q15058 1648 aa14.28□□□□□ -0.12
CAPN3-208ENST00000397204 ESF1Q9H501 851 aaKnown RBP14.28□□□□□ -0.12
CAPN3-208ENST00000397204 MLH3Q9UHC1 1453 aa14.28□□□□□ -0.12
CAPN3-208ENST00000397204 MYO5CQ9NQX4 1742 aa14.27□□□□□ -0.12
CAPN3-208ENST00000397204 CASKIN1Q8WXD9 1431 aa14.27□□□□□ -0.12
CAPN3-208ENST00000397204 KDM5CP41229 1560 aa14.26□□□□□ -0.13
CAPN3-208ENST00000397204 SETD1BQ9UPS6 1966 aaKnown RBP14.25□□□□□ -0.13
CAPN3-208ENST00000397204 CCDC18Q5T9S5 1454 aa14.25□□□□□ -0.13
CAPN3-208ENST00000397204 FER1L4A9Z1Z3 1794 aa14.24□□□□□ -0.13
CAPN3-208ENST00000397204 UHRF1BP1Q6BDS2 1440 aa14.24□□□□□ -0.13
CAPN3-208ENST00000397204 TRAPPC8Q9Y2L5 1435 aa14.24□□□□□ -0.13
CAPN3-208ENST00000397204 REREQ9P2R6 1566 aa14.22□□□□□ -0.13
CAPN3-208ENST00000397204 AGLP35573 1532 aa14.21□□□□□ -0.13
CAPN3-208ENST00000397204 ZNF777Q9ULD5 760 aaPredicted RBP14.21□□□□□ -0.13
CAPN3-208ENST00000397204 DIP2CQ9Y2E4 1556 aa14.2□□□□□ -0.14
CAPN3-208ENST00000397204 HNRNPMP52272 730 aaKnown RBP eCLIP14.19□□□□□ -0.14
CAPN3-208ENST00000397204 PREX1Q8TCU6 1659 aa14.19□□□□□ -0.14
CAPN3-208ENST00000397204 SPAG9O60271 1321 aaKnown RBP14.18□□□□□ -0.14
CAPN3-208ENST00000397204 PTPRTO14522 1441 aa14.18□□□□□ -0.14
CAPN3-208ENST00000397204 CNTLNQ9NXG0 1405 aa14.18□□□□□ -0.14
CAPN3-208ENST00000397204 CDC42BPBQ9Y5S2 1711 aa14.18□□□□□ -0.14
CAPN3-208ENST00000397204 CFDP1Q9UEE9 299 aaPredicted RBP14.17□□□□□ -0.14
CAPN3-208ENST00000397204 ABCC1P33527 1531 aa14.16□□□□□ -0.14
CAPN3-208ENST00000397204 FYCO1Q9BQS8 1478 aa14.16□□□□□ -0.14
CAPN3-208ENST00000397204 MKRN4PQ13434 485 aaPredicted RBP14.15□□□□□ -0.14
CAPN3-208ENST00000397204 LRRIQ1Q96JM4 1722 aa14.15□□□□□ -0.14
CAPN3-208ENST00000397204 PREX2Q70Z35 1606 aa14.15□□□□□ -0.14
CAPN3-208ENST00000397204 ABCA6Q8N139 1617 aa14.15□□□□□ -0.14
CAPN3-208ENST00000397204 GPATCH8Q9UKJ3 1502 aaKnown RBP14.15□□□□□ -0.14
CAPN3-208ENST00000397204 KIAA1107Q9UPP5 1409 aa14.15□□□□□ -0.14
CAPN3-208ENST00000397204 ZMYM3Q14202 1370 aa14.14□□□□□ -0.15
CAPN3-208ENST00000397204 NPATQ14207 1427 aa14.13□□□□□ -0.15
CAPN3-208ENST00000397204 CCNB3Q8WWL7 1395 aa14.12□□□□□ -0.15
CAPN3-208ENST00000397204 STRCQ7RTU9 1775 aa14.12□□□□□ -0.15
CAPN3-208ENST00000397204 RBM42Q9BTD8 480 aaKnown RBP14.12□□□□□ -0.15
CAPN3-208ENST00000397204 PLEKHH2Q8IVE3 1493 aa14.12□□□□□ -0.15
CAPN3-208ENST00000397204 KIDINS220Q9ULH0 1771 aa14.11□□□□□ -0.15
CAPN3-208ENST00000397204 SAMD9LQ8IVG5 1584 aa14.11□□□□□ -0.15
CAPN3-208ENST00000397204 GGT6Q6P531 493 aa14.1□□□□□ -0.15
CAPN3-208ENST00000397204 C3P01024 1663 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms