RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 HAP1P54257 671 aaPredicted RBP13.03□□□□□ -0.32
LIMCH1-203ENST00000396595 KTN1Q86UP2 1357 aaKnown RBP13.03□□□□□ -0.32
LIMCH1-203ENST00000396595 NACADO15069 1562 aa13.03□□□□□ -0.32
LIMCH1-203ENST00000396595 A0A0U1RQG5 324 aaPredicted RBP13.02□□□□□ -0.33
LIMCH1-203ENST00000396595 BAZ1AQ9NRL2 1556 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-203ENST00000396595 RCAN3Q9UKA8 241 aa13.01□□□□□ -0.33
LIMCH1-203ENST00000396595 RSPH6AQ9H0K4 717 aa13.01□□□□□ -0.33
LIMCH1-203ENST00000396595 CARMIL1Q5VZK9 1371 aa13□□□□□ -0.33
LIMCH1-203ENST00000396595 MORC1Q86VD1 984 aa13□□□□□ -0.33
LIMCH1-203ENST00000396595 GBP4Q96PP9 640 aa13□□□□□ -0.33
LIMCH1-203ENST00000396595 ARHGAP35Q9NRY4 1499 aa13□□□□□ -0.33
LIMCH1-203ENST00000396595 TSHZ2Q9NRE2 1034 aa13□□□□□ -0.33
LIMCH1-203ENST00000396595 SOGA1O94964 1423 aa12.99□□□□□ -0.33
LIMCH1-203ENST00000396595 RALBP1Q15311 655 aa12.99□□□□□ -0.33
LIMCH1-203ENST00000396595 IPO8O15397 1037 aaKnown RBP12.99□□□□□ -0.33
LIMCH1-203ENST00000396595 APPP05067 770 aa12.99□□□□□ -0.33
LIMCH1-203ENST00000396595 KANK1Q14678 1352 aa12.99□□□□□ -0.33
LIMCH1-203ENST00000396595 PKNOX2Q96KN3 472 aa12.98□□□□□ -0.33
LIMCH1-203ENST00000396595 SPRYD3Q8NCJ5 442 aa12.97□□□□□ -0.33
LIMCH1-203ENST00000396595 RWDD1Q9H446 243 aaPredicted RBP12.96□□□□□ -0.33
LIMCH1-203ENST00000396595 NAP1L2Q9ULW6 460 aaPredicted RBP12.96□□□□□ -0.34
LIMCH1-203ENST00000396595 SETQ01105 290 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-203ENST00000396595 CUX2O14529 1486 aa12.95□□□□□ -0.34
LIMCH1-203ENST00000396595 IPO9Q96P70 1041 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-203ENST00000396595 RAB3GAP2Q9H2M9 1393 aa12.95□□□□□ -0.34
LIMCH1-203ENST00000396595 PKD2Q13563 968 aa12.94□□□□□ -0.34
LIMCH1-203ENST00000396595 DRC7Q8IY82 874 aa12.93□□□□□ -0.34
LIMCH1-203ENST00000396595 PRKCSHP14314 528 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-203ENST00000396595 SRPK2P78362 688 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-203ENST00000396595 CALD1Q05682 793 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-203ENST00000396595 KIAA2012Q0VF49 1180 aa12.92□□□□□ -0.34
LIMCH1-203ENST00000396595 KANK4Q5T7N3 995 aaPredicted RBP12.92□□□□□ -0.34
LIMCH1-203ENST00000396595 PMFBP1Q8TBY8 1022 aa12.92□□□□□ -0.34
LIMCH1-203ENST00000396595 SLKQ9H2G2 1235 aaPredicted RBP12.92□□□□□ -0.34
LIMCH1-203ENST00000396595 TAOK2Q9UL54 1235 aa12.91□□□□□ -0.34
LIMCH1-203ENST00000396595 PDE3BQ13370 1112 aa12.91□□□□□ -0.34
LIMCH1-203ENST00000396595 LMOD2Q6P5Q4 547 aa12.91□□□□□ -0.34
LIMCH1-203ENST00000396595 KIAA1211Q6ZU35 1233 aa12.9□□□□□ -0.34
LIMCH1-203ENST00000396595 SYAP1Q96A49 352 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-203ENST00000396595 MPHOSPH9Q99550 1183 aa12.9□□□□□ -0.34
LIMCH1-203ENST00000396595 ROCK2O75116 1388 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-203ENST00000396595 GOLGA6L3A6NEY3 463 aa12.89□□□□□ -0.35
LIMCH1-203ENST00000396595 HDGFP51858 240 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-203ENST00000396595 RTF1Q92541 710 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-203ENST00000396595 GZF1Q9H116 711 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-203ENST00000396595 EIF4G1Q04637 1599 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-203ENST00000396595 CECR2Q9BXF3 1484 aa12.88□□□□□ -0.35
LIMCH1-203ENST00000396595 HDGFL2Q7Z4V5 671 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-203ENST00000396595 ITPRIPQ8IWB1 547 aa12.88□□□□□ -0.35
LIMCH1-203ENST00000396595 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-203ENST00000396595 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIMCH1-203ENST00000396595 GOLGA6L1Q8N7Z2 621 aa12.88□□□□□ -0.35
LIMCH1-203ENST00000396595 HTATSF1O43719 755 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-203ENST00000396595 GOLGA2Q08379 1002 aa12.87□□□□□ -0.35
LIMCH1-203ENST00000396595 FMN1Q68DA7 1419 aa12.87□□□□□ -0.35
LIMCH1-203ENST00000396595 NLRP13Q86W25 1043 aa12.87□□□□□ -0.35
LIMCH1-203ENST00000396595 FOXD1Q16676 465 aa12.86□□□□□ -0.35
LIMCH1-203ENST00000396595 TULP1O00294 542 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-203ENST00000396595 USP35Q9P2H5 1018 aa12.85□□□□□ -0.35
LIMCH1-203ENST00000396595 APBB1O00213 710 aa12.85□□□□□ -0.35
LIMCH1-203ENST00000396595 NUP155O75694 1391 aa12.84□□□□□ -0.35
LIMCH1-203ENST00000396595 MFAP1P55081 439 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-203ENST00000396595 CHMP4AQ9BY43 222 aa12.84□□□□□ -0.35
LIMCH1-203ENST00000396595 PHLDB1Q86UU1 1377 aa12.84□□□□□ -0.35
LIMCH1-203ENST00000396595 ANKRD30AQ9BXX3 1397 aa12.83□□□□□ -0.35
LIMCH1-203ENST00000396595 SAFB2Q14151 953 aaKnown RBP eCLIP12.83□□□□□ -0.36
LIMCH1-203ENST00000396595 EIF3AQ14152 1382 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-203ENST00000396595 NPHP1O15259 732 aa12.82□□□□□ -0.36
LIMCH1-203ENST00000396595 GNL2Q13823 731 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-203ENST00000396595 L3MBTL2Q969R5 705 aa12.82□□□□□ -0.36
LIMCH1-203ENST00000396595 SOX12O15370 315 aa12.82□□□□□ -0.36
LIMCH1-203ENST00000396595 SMC4Q9NTJ3 1288 aa12.82□□□□□ -0.36
LIMCH1-203ENST00000396595 NOC3LQ8WTT2 800 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-203ENST00000396595 CENPJQ9HC77 1338 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-203ENST00000396595 HMMRO75330 724 aa12.81□□□□□ -0.36
LIMCH1-203ENST00000396595 ZNF771Q7L3S4 317 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-203ENST00000396595 CCDC88BA6NC98 1476 aa12.8□□□□□ -0.36
LIMCH1-203ENST00000396595 CSPP1Q1MSJ5 1256 aa12.79□□□□□ -0.36
LIMCH1-203ENST00000396595 ABCC8Q09428 1581 aa12.79□□□□□ -0.36
LIMCH1-203ENST00000396595 ERCC6Q03468 1493 aa12.78□□□□□ -0.36
LIMCH1-203ENST00000396595 STK26Q9P289 416 aa12.78□□□□□ -0.36
LIMCH1-203ENST00000396595 HDAC5Q9UQL6 1122 aa12.78□□□□□ -0.36
LIMCH1-203ENST00000396595 CARMIL2Q6F5E8 1435 aa12.78□□□□□ -0.36
LIMCH1-203ENST00000396595 TPM4P67936 248 aa12.78□□□□□ -0.36
LIMCH1-203ENST00000396595 STK31Q9BXU1 1019 aa12.78□□□□□ -0.36
LIMCH1-203ENST00000396595 KIF15Q9NS87 1388 aa12.78□□□□□ -0.36
LIMCH1-203ENST00000396595 DDX11L8A8MPP1 907 aa12.77□□□□□ -0.36
LIMCH1-203ENST00000396595 CENPQQ7L2Z9 268 aaPredicted RBP12.77□□□□□ -0.37
LIMCH1-203ENST00000396595 SPAG9O60271 1321 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-203ENST00000396595 GGT6Q6P531 493 aa12.76□□□□□ -0.37
LIMCH1-203ENST00000396595 MYBBP1AQ9BQG0 1328 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-203ENST00000396595 PHF14O94880 888 aa12.76□□□□□ -0.37
LIMCH1-203ENST00000396595 CLUAP1Q96AJ1 413 aa12.75□□□□□ -0.37
LIMCH1-203ENST00000396595 GPATCH3Q96I76 525 aa12.75□□□□□ -0.37
LIMCH1-203ENST00000396595 CCDC34Q96HJ3 373 aa12.75□□□□□ -0.37
LIMCH1-203ENST00000396595 ST18O60284 1047 aa12.75□□□□□ -0.37
LIMCH1-203ENST00000396595 FAM161AQ3B820 660 aa12.75□□□□□ -0.37
LIMCH1-203ENST00000396595 PDE4AP27815 886 aa12.75□□□□□ -0.37
LIMCH1-203ENST00000396595 EFCAB2Q5VUJ9 269 aa12.75□□□□□ -0.37
LIMCH1-203ENST00000396595 TERF2IPQ9NYB0 399 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms