RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 PTMSP20962 102 aa6.95□□□□□ -1.3
VPS13C-204ENST00000395898 CHAF1AQ13111 956 aaPredicted RBP6.95□□□□□ -1.3
VPS13C-204ENST00000395898 KTN1Q86UP2 1357 aaKnown RBP6.95□□□□□ -1.3
VPS13C-204ENST00000395898 EIF3AQ14152 1382 aaKnown RBP6.95□□□□□ -1.3
VPS13C-204ENST00000395898 MORC1Q86VD1 984 aa6.94□□□□□ -1.3
VPS13C-204ENST00000395898 PLCB2Q00722 1185 aa6.94□□□□□ -1.3
VPS13C-204ENST00000395898 HDGFL2Q7Z4V5 671 aaPredicted RBP6.94□□□□□ -1.3
VPS13C-204ENST00000395898 L1TD1Q5T7N2 865 aaKnown RBP6.93□□□□□ -1.3
VPS13C-204ENST00000395898 WIZO95785 1651 aa6.93□□□□□ -1.3
VPS13C-204ENST00000395898 ROCK2O75116 1388 aaKnown RBP6.93□□□□□ -1.3
VPS13C-204ENST00000395898 NAP1L2Q9ULW6 460 aaPredicted RBP6.93□□□□□ -1.3
VPS13C-204ENST00000395898 ABCC8Q09428 1581 aa6.93□□□□□ -1.3
VPS13C-204ENST00000395898 RALBP1Q15311 655 aa6.92□□□□□ -1.3
VPS13C-204ENST00000395898 MSNP26038 577 aaKnown RBP6.92□□□□□ -1.3
VPS13C-204ENST00000395898 RSPH4AQ5TD94 716 aa6.92□□□□□ -1.3
VPS13C-204ENST00000395898 HDAC5Q9UQL6 1122 aa6.92□□□□□ -1.3
VPS13C-204ENST00000395898 CCDC88BA6NC98 1476 aa6.92□□□□□ -1.3
VPS13C-204ENST00000395898 KIAA1211Q6ZU35 1233 aa6.92□□□□□ -1.3
VPS13C-204ENST00000395898 CCDC18Q5T9S5 1454 aa6.92□□□□□ -1.3
VPS13C-204ENST00000395898 ANKRD30AQ9BXX3 1397 aa6.91□□□□□ -1.3
VPS13C-204ENST00000395898 TULP1O00294 542 aaPredicted RBP6.91□□□□□ -1.3
VPS13C-204ENST00000395898 TPRNQ4KMQ1 711 aa6.91□□□□□ -1.3
VPS13C-204ENST00000395898 SOGA1O94964 1423 aa6.91□□□□□ -1.3
VPS13C-204ENST00000395898 CECR2Q9BXF3 1484 aa6.91□□□□□ -1.3
VPS13C-204ENST00000395898 SPAG9O60271 1321 aaKnown RBP6.91□□□□□ -1.3
VPS13C-204ENST00000395898 B4GALNT3Q6L9W6 998 aa6.91□□□□□ -1.3
VPS13C-204ENST00000395898 TOP2AP11388 1531 aaKnown RBP6.9□□□□□ -1.3
VPS13C-204ENST00000395898 TRHP20396 242 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-204ENST00000395898 NAP1L5Q96NT1 182 aaPredicted RBP6.9□□□□□ -1.31
VPS13C-204ENST00000395898 GNL2Q13823 731 aaKnown RBP6.89□□□□□ -1.31
VPS13C-204ENST00000395898 GGT6Q6P531 493 aa6.89□□□□□ -1.31
VPS13C-204ENST00000395898 HTATSF1O43719 755 aaKnown RBP6.89□□□□□ -1.31
VPS13C-204ENST00000395898 PKD2Q13563 968 aa6.89□□□□□ -1.31
VPS13C-204ENST00000395898 EFCAB2Q5VUJ9 269 aa6.89□□□□□ -1.31
VPS13C-204ENST00000395898 PMFBP1Q8TBY8 1022 aa6.89□□□□□ -1.31
VPS13C-204ENST00000395898 MROH2BQ7Z745 1585 aa6.89□□□□□ -1.31
VPS13C-204ENST00000395898 SENP3-EIF4A1A0A087X0R7 540 aa6.89□□□□□ -1.31
VPS13C-204ENST00000395898 PHLDB1Q86UU1 1377 aa6.89□□□□□ -1.31
VPS13C-204ENST00000395898 MPHOSPH9Q99550 1183 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 NUP155O75694 1391 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 DRC7Q8IY82 874 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 GPATCH3Q96I76 525 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 GBP4Q96PP9 640 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 RWDD1Q9H446 243 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-204ENST00000395898 TMX4Q9H1E5 349 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-204ENST00000395898 MLECQ14165 292 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 SYAP1Q96A49 352 aaPredicted RBP6.88□□□□□ -1.31
VPS13C-204ENST00000395898 TERF2IPQ9NYB0 399 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 CCDC34Q96HJ3 373 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 TAOK2Q9UL54 1235 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 SOX12O15370 315 aa6.88□□□□□ -1.31
VPS13C-204ENST00000395898 RCAN3Q9UKA8 241 aa6.87□□□□□ -1.31
VPS13C-204ENST00000395898 KIAA2012Q0VF49 1180 aa6.87□□□□□ -1.31
VPS13C-204ENST00000395898 RAB3GAP2Q9H2M9 1393 aa6.87□□□□□ -1.31
VPS13C-204ENST00000395898 PAK3O75914 559 aaPredicted RBP6.87□□□□□ -1.31
VPS13C-204ENST00000395898 HSPA5P11021 654 aaKnown RBP6.87□□□□□ -1.31
VPS13C-204ENST00000395898 STK26Q9P289 416 aa6.87□□□□□ -1.31
VPS13C-204ENST00000395898 SAFB2Q14151 953 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS13C-204ENST00000395898 U2AF1L5P0DN76 240 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-204ENST00000395898 U2AF1Q01081 240 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS13C-204ENST00000395898 UACAQ9BZF9 1416 aa6.86□□□□□ -1.31
VPS13C-204ENST00000395898 TCERG1O14776 1098 aaKnown RBP6.86□□□□□ -1.31
VPS13C-204ENST00000395898 LMOD3Q0VAK6 560 aa6.86□□□□□ -1.31
VPS13C-204ENST00000395898 PRDM2Q13029 1718 aa6.86□□□□□ -1.31
VPS13C-204ENST00000395898 CSPP1Q1MSJ5 1256 aa6.86□□□□□ -1.31
VPS13C-204ENST00000395898 EID1Q9Y6B2 187 aa6.85□□□□□ -1.31
VPS13C-204ENST00000395898 STK31Q9BXU1 1019 aa6.85□□□□□ -1.31
VPS13C-204ENST00000395898 RAPGEF2Q9Y4G8 1499 aa6.85□□□□□ -1.31
VPS13C-204ENST00000395898 HMMRO75330 724 aa6.85□□□□□ -1.31
VPS13C-204ENST00000395898 TPM4P67936 248 aa6.85□□□□□ -1.31
VPS13C-204ENST00000395898 ITPRIPQ8IWB1 547 aa6.85□□□□□ -1.31
VPS13C-204ENST00000395898 SMARCA4P51532 1647 aa6.84□□□□□ -1.31
VPS13C-204ENST00000395898 PDE3BQ13370 1112 aa6.83□□□□□ -1.32
VPS13C-204ENST00000395898 GORABQ5T7V8 394 aa6.83□□□□□ -1.32
VPS13C-204ENST00000395898 SMC4Q9NTJ3 1288 aa6.83□□□□□ -1.32
VPS13C-204ENST00000395898 KIF3AQ9Y496 699 aa6.83□□□□□ -1.32
VPS13C-204ENST00000395898 CSB-PGBD3P0DP91 1061 aa6.83□□□□□ -1.32
VPS13C-204ENST00000395898 NLRP13Q86W25 1043 aa6.83□□□□□ -1.32
VPS13C-204ENST00000395898 PHF14O94880 888 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 KIF3BO15066 747 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 WASHC2CQ9Y4E1 1318 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 TAF7LQ5H9L4 462 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 ISY1Q9ULR0 285 aaKnown RBP6.82□□□□□ -1.32
VPS13C-204ENST00000395898 CLSTN1O94985 981 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 KIF15Q9NS87 1388 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 FOXD1Q16676 465 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 RBM19Q9Y4C8 960 aaKnown RBP6.82□□□□□ -1.32
VPS13C-204ENST00000395898 CHMP4CQ96CF2 233 aa6.82□□□□□ -1.32
VPS13C-204ENST00000395898 CCDC144AA2RUR9 1427 aa6.81□□□□□ -1.32
VPS13C-204ENST00000395898 TRIM6-TRIM34B2RNG4 842 aa6.81□□□□□ -1.32
VPS13C-204ENST00000395898 USP35Q9P2H5 1018 aa6.81□□□□□ -1.32
VPS13C-204ENST00000395898 SPRYD3Q8NCJ5 442 aa6.81□□□□□ -1.32
VPS13C-204ENST00000395898 KANK4Q5T7N3 995 aaPredicted RBP6.8□□□□□ -1.32
VPS13C-204ENST00000395898 ST18O60284 1047 aa6.8□□□□□ -1.32
VPS13C-204ENST00000395898 AMPHP49418 695 aa6.8□□□□□ -1.32
VPS13C-204ENST00000395898 NGDNQ8NEJ9 315 aaKnown RBP6.8□□□□□ -1.32
VPS13C-204ENST00000395898 APBB1O00213 710 aa6.8□□□□□ -1.32
VPS13C-204ENST00000395898 HNRNPMP52272 730 aaKnown RBP eCLIP6.8□□□□□ -1.326e-6■■■■□ 20.3
VPS13C-204ENST00000395898 TDRD9Q8NDG6 1382 aaKnown RBP6.8□□□□□ -1.32
VPS13C-204ENST00000395898 CHMP3Q9Y3E7 222 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms