RNA–Protein interactions for RNA: ENST00000392557.8

BRF1-204, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 1 (best) BASIC

Gene BRF1, Length 3,579 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-204ENST00000392557 HFM1A2PYH4 1435 aa15.22■□□□□ 0.03
BRF1-204ENST00000392557 NAIPQ13075 1403 aa15.22■□□□□ 0.03
BRF1-204ENST00000392557 PLEKHD1A6NEE1 506 aa15.2■□□□□ 0.02
BRF1-204ENST00000392557 RAPGEF6Q8TEU7 1601 aa15.2■□□□□ 0.02
BRF1-204ENST00000392557 ANP32EQ9BTT0 268 aa15.19■□□□□ 0.02
BRF1-204ENST00000392557 UACAQ9BZF9 1416 aa15.17■□□□□ 0.02
BRF1-204ENST00000392557 NUP160Q12769 1436 aa15.16■□□□□ 0.02
BRF1-204ENST00000392557 PPP1R15AO75807 674 aaPredicted RBP15.15■□□□□ 0.02
BRF1-204ENST00000392557 ARHGEF11O15085 1522 aa15.15■□□□□ 0.02
BRF1-204ENST00000392557 IRX6P78412 446 aaPredicted RBP15.15■□□□□ 0.02
BRF1-204ENST00000392557 POLR3GLQ9BT43 218 aa15.14■□□□□ 0.01
BRF1-204ENST00000392557 MIA2Q96PC5 1412 aa15.14■□□□□ 0.01
BRF1-204ENST00000392557 TROQ12816 1431 aaPredicted RBP15.13■□□□□ 0.01
BRF1-204ENST00000392557 PTPRGP23470 1445 aa15.13■□□□□ 0.01
BRF1-204ENST00000392557 MPHOSPH9Q99550 1183 aa15.13■□□□□ 0.01
BRF1-204ENST00000392557 SLC4A1APQ9BWU0 796 aaKnown RBP15.11■□□□□ 0.01
BRF1-204ENST00000392557 ERICH6Q7L0X2 663 aa15.11■□□□□ 0.01
BRF1-204ENST00000392557 TCOF1Q13428 1488 aaKnown RBP15.11■□□□□ 0.01
BRF1-204ENST00000392557 HNRNPUQ00839 825 aaKnown RBP eCLIP15.1■□□□□ 0.01
BRF1-204ENST00000392557 DAPK1P53355 1430 aa15.1■□□□□ 0.01
BRF1-204ENST00000392557 ABCC5O15440 1437 aa15.08■□□□□ 0.01
BRF1-204ENST00000392557 TIMELESSQ9UNS1 1208 aa15.08■□□□□ 0.01
BRF1-204ENST00000392557 KDM6BO15054 1643 aa15.08■□□□□ 0
BRF1-204ENST00000392557 KIF14Q15058 1648 aa15.07■□□□□ 0
BRF1-204ENST00000392557 RBM19Q9Y4C8 960 aaKnown RBP15.06■□□□□ 0
BRF1-204ENST00000392557 HNRNPMP52272 730 aaKnown RBP eCLIP15.06■□□□□ 02e-7■■■■■ 35.3
BRF1-204ENST00000392557 ATP10BO94823 1461 aa15.05■□□□□ 0
BRF1-204ENST00000392557 CAMSAP2Q08AD1 1489 aa15.04■□□□□ -0
BRF1-204ENST00000392557 GPATCH8Q9UKJ3 1502 aaKnown RBP15.04■□□□□ -0
BRF1-204ENST00000392557 TSPY4P0CV99 314 aa15.04■□□□□ -0
BRF1-204ENST00000392557 TSPY10P0CW01 314 aa15.04■□□□□ -0
BRF1-204ENST00000392557 ZNF326Q5BKZ1 582 aaKnown RBP15.04■□□□□ -0
BRF1-204ENST00000392557 CHD1O14646 1710 aa15.03■□□□□ -0
BRF1-204ENST00000392557 L3MBTL2Q969R5 705 aa15.01□□□□□ -0.01
BRF1-204ENST00000392557 CCER2I3L3R5 266 aa14.98□□□□□ -0.01
BRF1-204ENST00000392557 DNMT1P26358 1616 aaKnown RBP14.98□□□□□ -0.01
BRF1-204ENST00000392557 GCC2Q8IWJ2 1684 aa14.98□□□□□ -0.01
BRF1-204ENST00000392557 ABCA8O94911 1581 aa14.98□□□□□ -0.01
BRF1-204ENST00000392557 AKNAQ7Z591 1439 aa14.98□□□□□ -0.01
BRF1-204ENST00000392557 ROCK1Q13464 1354 aa14.97□□□□□ -0.01
BRF1-204ENST00000392557 ANKRD30AQ9BXX3 1397 aa14.97□□□□□ -0.01
BRF1-204ENST00000392557 PKD2Q13563 968 aa14.97□□□□□ -0.01
BRF1-204ENST00000392557 FAM9BQ8IZU0 186 aa14.97□□□□□ -0.01
BRF1-204ENST00000392557 ERCC6L2Q5T890 1561 aa14.96□□□□□ -0.01
BRF1-204ENST00000392557 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.95□□□□□ -0.024e-6■■□□□ 14.4
BRF1-204ENST00000392557 NCOA1Q15788 1441 aa14.95□□□□□ -0.02
BRF1-204ENST00000392557 DENND4BO75064 1496 aaPredicted RBP14.95□□□□□ -0.02
BRF1-204ENST00000392557 ITSN2Q9NZM3 1697 aa14.94□□□□□ -0.02
BRF1-204ENST00000392557 HSPA5P11021 654 aaKnown RBP14.94□□□□□ -0.02
BRF1-204ENST00000392557 NUP155O75694 1391 aa14.93□□□□□ -0.02
BRF1-204ENST00000392557 ANKRD50Q9ULJ7 1429 aa14.92□□□□□ -0.02
BRF1-204ENST00000392557 EIF4G2P78344 907 aaKnown RBP eCLIP14.91□□□□□ -0.021e-6■■■■■ 36.9
BRF1-204ENST00000392557 C9orf84Q5VXU9 1444 aa14.91□□□□□ -0.02
BRF1-204ENST00000392557 BCL11AQ9H165 835 aa14.91□□□□□ -0.02
BRF1-204ENST00000392557 MYT1LQ9UL68 1186 aa14.9□□□□□ -0.02
BRF1-204ENST00000392557 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
BRF1-204ENST00000392557 KDM2AQ9Y2K7 1162 aa14.89□□□□□ -0.03
BRF1-204ENST00000392557 ABCC10Q5T3U5 1492 aa14.89□□□□□ -0.03
BRF1-204ENST00000392557 NBPF8Q3BBV2 869 aa14.89□□□□□ -0.03
BRF1-204ENST00000392557 KIF15Q9NS87 1388 aa14.89□□□□□ -0.03
BRF1-204ENST00000392557 CDC42BPAQ5VT25 1732 aa14.88□□□□□ -0.03
BRF1-204ENST00000392557 ARHGAP5Q13017 1502 aa14.87□□□□□ -0.03
BRF1-204ENST00000392557 ADCY10Q96PN6 1610 aa14.87□□□□□ -0.03
BRF1-204ENST00000392557 MRS2Q9HD23 443 aa14.86□□□□□ -0.03
BRF1-204ENST00000392557 PZPP20742 1482 aa14.84□□□□□ -0.03
BRF1-204ENST00000392557 B4GALNT3Q6L9W6 998 aa14.83□□□□□ -0.04
BRF1-204ENST00000392557 RPRD2Q5VT52 1461 aaKnown RBP14.83□□□□□ -0.04
BRF1-204ENST00000392557 KDM5BQ9UGL1 1544 aa14.83□□□□□ -0.04
BRF1-204ENST00000392557 WASHC2AQ641Q2 1341 aa14.82□□□□□ -0.04
BRF1-204ENST00000392557 RGL3Q3MIN7 710 aa14.82□□□□□ -0.04
BRF1-204ENST00000392557 KIAA1107Q9UPP5 1409 aa14.81□□□□□ -0.04
BRF1-204ENST00000392557 ADGBQ8N7X0 1667 aa14.81□□□□□ -0.04
BRF1-204ENST00000392557 ABCC2Q92887 1545 aa14.81□□□□□ -0.04
BRF1-204ENST00000392557 SYCP2Q9BX26 1530 aa14.8□□□□□ -0.04
BRF1-204ENST00000392557 ADGRL2O95490 1459 aa14.8□□□□□ -0.04
BRF1-204ENST00000392557 CCDC141Q6ZP82 1450 aa14.8□□□□□ -0.04
BRF1-204ENST00000392557 EFCAB2Q5VUJ9 269 aa14.79□□□□□ -0.04
BRF1-204ENST00000392557 TTC37Q6PGP7 1564 aa14.79□□□□□ -0.04
BRF1-204ENST00000392557 C11orf95C9JLR9 678 aaPredicted RBP14.79□□□□□ -0.04
BRF1-204ENST00000392557 DCAF11Q8TEB1 546 aa14.79□□□□□ -0.04
BRF1-204ENST00000392557 CCDC184Q52MB2 194 aa14.78□□□□□ -0.04
BRF1-204ENST00000392557 SAMD9LQ8IVG5 1584 aa14.78□□□□□ -0.04
BRF1-204ENST00000392557 SHROOM2Q13796 1616 aa14.78□□□□□ -0.04
BRF1-204ENST00000392557 MBD5Q9P267 1494 aa14.78□□□□□ -0.04
BRF1-204ENST00000392557 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.78□□□□□ -0.04
BRF1-204ENST00000392557 CROCC2H7BZ55 1655 aa14.78□□□□□ -0.04
BRF1-204ENST00000392557 MSH5O43196 834 aa14.78□□□□□ -0.04
BRF1-204ENST00000392557 RSPH4AQ5TD94 716 aa14.77□□□□□ -0.04
BRF1-204ENST00000392557 AFAP1Q8N556 730 aa14.77□□□□□ -0.05
BRF1-204ENST00000392557 CDC42BPBQ9Y5S2 1711 aa14.76□□□□□ -0.05
BRF1-204ENST00000392557 PPP4R2Q9NY27 417 aa14.75□□□□□ -0.05
BRF1-204ENST00000392557 TEX14Q8IWB6 1497 aa14.75□□□□□ -0.05
BRF1-204ENST00000392557 SALL2Q9Y467 1007 aaPredicted RBP14.75□□□□□ -0.05
BRF1-204ENST00000392557 SHANK2Q9UPX8 1470 aa14.74□□□□□ -0.05
BRF1-204ENST00000392557 PREX2Q70Z35 1606 aa14.74□□□□□ -0.05
BRF1-204ENST00000392557 NBR1Q14596 966 aa14.73□□□□□ -0.05
BRF1-204ENST00000392557 CARD11Q9BXL7 1154 aa14.73□□□□□ -0.05
BRF1-204ENST00000392557 CLASP1Q7Z460 1538 aa14.72□□□□□ -0.05
BRF1-204ENST00000392557 NPM1P06748 294 aaKnown RBP eCLIP14.72□□□□□ -0.05
BRF1-204ENST00000392557 OSCARQ8IYS5 282 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms