RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 DENND4BO75064 1496 aaPredicted RBP24.69■■□□□ 1.54
SQSTM1-202ENST00000389805 MPHOSPH9Q99550 1183 aa24.67■■□□□ 1.54
SQSTM1-202ENST00000389805 PRG4Q92954 1404 aaPredicted RBP24.66■■□□□ 1.54
SQSTM1-202ENST00000389805 PLB1Q6P1J6 1458 aa24.65■■□□□ 1.54
SQSTM1-202ENST00000389805 JPH4Q96JJ6 628 aa24.65■■□□□ 1.54
SQSTM1-202ENST00000389805 CDK11AQ9UQ88 783 aaPredicted RBP24.64■■□□□ 1.54
SQSTM1-202ENST00000389805 CEP170Q5SW79 1584 aa24.64■■□□□ 1.53
SQSTM1-202ENST00000389805 ANP32CO43423 234 aa24.63■■□□□ 1.53
SQSTM1-202ENST00000389805 RAPGEF6Q8TEU7 1601 aa24.62■■□□□ 1.53
SQSTM1-202ENST00000389805 SYNJ2O15056 1496 aa24.61■■□□□ 1.53
SQSTM1-202ENST00000389805 MAGI1Q96QZ7 1491 aaPredicted RBP24.61■■□□□ 1.53
SQSTM1-202ENST00000389805 ZNF777Q9ULD5 760 aaPredicted RBP24.61■■□□□ 1.53
SQSTM1-202ENST00000389805 ABCC5O15440 1437 aa24.6■■□□□ 1.53
SQSTM1-202ENST00000389805 DAPK1P53355 1430 aa24.6■■□□□ 1.53
SQSTM1-202ENST00000389805 KDM5BQ9UGL1 1544 aa24.6■■□□□ 1.53
SQSTM1-202ENST00000389805 GCC2Q8IWJ2 1684 aa24.59■■□□□ 1.53
SQSTM1-202ENST00000389805 CFDP1Q9UEE9 299 aaPredicted RBP24.57■■□□□ 1.52
SQSTM1-202ENST00000389805 AKNAQ7Z591 1439 aa24.56■■□□□ 1.52
SQSTM1-202ENST00000389805 L3MBTL2Q969R5 705 aa24.55■■□□□ 1.52
SQSTM1-202ENST00000389805 CCER2I3L3R5 266 aa24.53■■□□□ 1.52
SQSTM1-202ENST00000389805 TROQ12816 1431 aaPredicted RBP24.52■■□□□ 1.52
SQSTM1-202ENST00000389805 FANCIQ9NVI1 1328 aa24.52■■□□□ 1.52
SQSTM1-202ENST00000389805 HSPA5P11021 654 aaKnown RBP24.5■■□□□ 1.51
SQSTM1-202ENST00000389805 SLC4A1APQ9BWU0 796 aaKnown RBP24.5■■□□□ 1.51
SQSTM1-202ENST00000389805 CARMIL2Q6F5E8 1435 aa24.49■■□□□ 1.51
SQSTM1-202ENST00000389805 ROCK1Q13464 1354 aa24.48■■□□□ 1.51
SQSTM1-202ENST00000389805 NUP160Q12769 1436 aa24.48■■□□□ 1.51
SQSTM1-202ENST00000389805 DNMT1P26358 1616 aaKnown RBP24.47■■□□□ 1.51
SQSTM1-202ENST00000389805 HNRNPUQ00839 825 aaKnown RBP eCLIP24.47■■□□□ 1.51
SQSTM1-202ENST00000389805 GPATCH8Q9UKJ3 1502 aaKnown RBP24.46■■□□□ 1.51
SQSTM1-202ENST00000389805 KIF14Q15058 1648 aa24.46■■□□□ 1.51
SQSTM1-202ENST00000389805 ANKRD30BQ9BXX2 1392 aa24.44■■□□□ 1.5
SQSTM1-202ENST00000389805 CAMSAP2Q08AD1 1489 aa24.44■■□□□ 1.5
SQSTM1-202ENST00000389805 WASHC2AQ641Q2 1341 aa24.43■■□□□ 1.5
SQSTM1-202ENST00000389805 PLEKHD1A6NEE1 506 aa24.42■■□□□ 1.5
SQSTM1-202ENST00000389805 DEKP35659 375 aaKnown RBP24.42■■□□□ 1.5
SQSTM1-202ENST00000389805 NBPF8Q3BBV2 869 aa24.42■■□□□ 1.5
SQSTM1-202ENST00000389805 EIF4G2P78344 907 aaKnown RBP eCLIP24.4■■□□□ 1.5
SQSTM1-202ENST00000389805 NCOA1Q15788 1441 aa24.38■■□□□ 1.49
SQSTM1-202ENST00000389805 C11orf95C9JLR9 678 aaPredicted RBP24.37■■□□□ 1.49
SQSTM1-202ENST00000389805 PRKCSHP14314 528 aaPredicted RBP24.36■■□□□ 1.49
SQSTM1-202ENST00000389805 ATP10BO94823 1461 aa24.36■■□□□ 1.49
SQSTM1-202ENST00000389805 RPRD2Q5VT52 1461 aaKnown RBP24.34■■□□□ 1.49
SQSTM1-202ENST00000389805 NBR1Q14596 966 aa24.33■■□□□ 1.48
SQSTM1-202ENST00000389805 PZPP20742 1482 aa24.31■■□□□ 1.48
SQSTM1-202ENST00000389805 PKD2Q13563 968 aa24.3■■□□□ 1.48
SQSTM1-202ENST00000389805 ABCA8O94911 1581 aa24.29■■□□□ 1.48
SQSTM1-202ENST00000389805 HNRNPMP52272 730 aaKnown RBP eCLIP24.29■■□□□ 1.484e-8■■■■□ 21.3
SQSTM1-202ENST00000389805 B4GALNT3Q6L9W6 998 aa24.28■■□□□ 1.48
SQSTM1-202ENST00000389805 ITSN2Q9NZM3 1697 aa24.28■■□□□ 1.48
SQSTM1-202ENST00000389805 PTPRGP23470 1445 aa24.27■■□□□ 1.48
SQSTM1-202ENST00000389805 TEX14Q8IWB6 1497 aa24.27■■□□□ 1.48
SQSTM1-202ENST00000389805 ZNF326Q5BKZ1 582 aaKnown RBP24.27■■□□□ 1.48
SQSTM1-202ENST00000389805 ANKRD30AQ9BXX3 1397 aa24.27■■□□□ 1.48
SQSTM1-202ENST00000389805 ADCY10Q96PN6 1610 aa24.26■■□□□ 1.47
SQSTM1-202ENST00000389805 ABCC10Q5T3U5 1492 aa24.24■■□□□ 1.47
SQSTM1-202ENST00000389805 ANKRD50Q9ULJ7 1429 aa24.23■■□□□ 1.47
SQSTM1-202ENST00000389805 PPP4R2Q9NY27 417 aa24.22■■□□□ 1.47
SQSTM1-202ENST00000389805 CCDC184Q52MB2 194 aa24.21■■□□□ 1.47
SQSTM1-202ENST00000389805 CDC42BPAQ5VT25 1732 aa24.21■■□□□ 1.47
SQSTM1-202ENST00000389805 TSPY4P0CV99 314 aa24.21■■□□□ 1.47
SQSTM1-202ENST00000389805 TSPY10P0CW01 314 aa24.21■■□□□ 1.47
SQSTM1-202ENST00000389805 ADGRL2O95490 1459 aa24.21■■□□□ 1.47
SQSTM1-202ENST00000389805 NUP155O75694 1391 aa24.19■■□□□ 1.46
SQSTM1-202ENST00000389805 CCDC7Q96M83 1385 aa24.19■■□□□ 1.46
SQSTM1-202ENST00000389805 C9orf84Q5VXU9 1444 aa24.18■■□□□ 1.46
SQSTM1-202ENST00000389805 KIAA1107Q9UPP5 1409 aa24.18■■□□□ 1.46
SQSTM1-202ENST00000389805 PAK3O75914 559 aaPredicted RBP24.18■■□□□ 1.46
SQSTM1-202ENST00000389805 ADGBQ8N7X0 1667 aa24.17■■□□□ 1.46
SQSTM1-202ENST00000389805 MYT1LQ9UL68 1186 aa24.17■■□□□ 1.46
SQSTM1-202ENST00000389805 CROCC2H7BZ55 1655 aa24.16■■□□□ 1.46
SQSTM1-202ENST00000389805 KIF7Q2M1P5 1343 aa24.14■■□□□ 1.46
SQSTM1-202ENST00000389805 CNGB1Q14028 1251 aaPredicted RBP24.14■■□□□ 1.45
SQSTM1-202ENST00000389805 NOP58Q9Y2X3 529 aaKnown RBP24.14■■□□□ 1.45
SQSTM1-202ENST00000389805 CNTLNQ9NXG0 1405 aa24.13■■□□□ 1.45
SQSTM1-202ENST00000389805 SPATA31E1Q6ZUB1 1445 aa24.13■■□□□ 1.45
SQSTM1-202ENST00000389805 ANO8Q9HCE9 1232 aaPredicted RBP24.12■■□□□ 1.45
SQSTM1-202ENST00000389805 POLR3GLQ9BT43 218 aa24.12■■□□□ 1.45
SQSTM1-202ENST00000389805 FAM9BQ8IZU0 186 aa24.11■■□□□ 1.45
SQSTM1-202ENST00000389805 KIF15Q9NS87 1388 aa24.1■■□□□ 1.45
SQSTM1-202ENST00000389805 PRKRIP1Q9H875 184 aaPredicted RBP24.09■■□□□ 1.45
SQSTM1-202ENST00000389805 KDM2AQ9Y2K7 1162 aa24.09■■□□□ 1.45
SQSTM1-202ENST00000389805 CHD1O14646 1710 aa24.08■■□□□ 1.45
SQSTM1-202ENST00000389805 MBD5Q9P267 1494 aa24.08■■□□□ 1.44
SQSTM1-202ENST00000389805 ERCC6L2Q5T890 1561 aa24.06■■□□□ 1.44
SQSTM1-202ENST00000389805 SHANK2Q9UPX8 1470 aa24.04■■□□□ 1.44
SQSTM1-202ENST00000389805 ERICH6BQ5W0A0 696 aa24.03■■□□□ 1.44
SQSTM1-202ENST00000389805 USP47Q96K76 1375 aa24.02■■□□□ 1.44
SQSTM1-202ENST00000389805 SAMD9LQ8IVG5 1584 aa24.01■■□□□ 1.43
SQSTM1-202ENST00000389805 MRS2Q9HD23 443 aa24.01■■□□□ 1.43
SQSTM1-202ENST00000389805 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24■■□□□ 1.43
SQSTM1-202ENST00000389805 CDC42BPBQ9Y5S2 1711 aa24■■□□□ 1.43
SQSTM1-202ENST00000389805 DCAF11Q8TEB1 546 aa24■■□□□ 1.43
SQSTM1-202ENST00000389805 CCDC141Q6ZP82 1450 aa23.97■■□□□ 1.43
SQSTM1-202ENST00000389805 CARD11Q9BXL7 1154 aa23.96■■□□□ 1.43
SQSTM1-202ENST00000389805 SALL2Q9Y467 1007 aaPredicted RBP23.95■■□□□ 1.42
SQSTM1-202ENST00000389805 ARHGEF5Q12774 1597 aa23.94■■□□□ 1.42
SQSTM1-202ENST00000389805 TTC37Q6PGP7 1564 aa23.94■■□□□ 1.42
SQSTM1-202ENST00000389805 ARHGAP5Q13017 1502 aa23.94■■□□□ 1.42
SQSTM1-202ENST00000389805 SYCP2Q9BX26 1530 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms