RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 CDC42BPBQ9Y5S2 1711 aa18.54■□□□□ 0.56
CIITA-202ENST00000381835 MYO5CQ9NQX4 1742 aa18.53■□□□□ 0.56
CIITA-202ENST00000381835 PREX2Q70Z35 1606 aa18.53■□□□□ 0.56
CIITA-202ENST00000381835 CAMSAP2Q08AD1 1489 aa18.53■□□□□ 0.56
CIITA-202ENST00000381835 PTPRKQ15262 1439 aa18.5■□□□□ 0.55
CIITA-202ENST00000381835 ARHGAP5Q13017 1502 aa18.5■□□□□ 0.55
CIITA-202ENST00000381835 CHIC2Q9UKJ5 165 aa18.48■□□□□ 0.55
CIITA-202ENST00000381835 PLCH2O75038 1416 aa18.46■□□□□ 0.55
CIITA-202ENST00000381835 ABCA9Q8IUA7 1624 aa18.46■□□□□ 0.55
CIITA-202ENST00000381835 DNMT1P26358 1616 aaKnown RBP18.45■□□□□ 0.54
CIITA-202ENST00000381835 DAPK1P53355 1430 aa18.45■□□□□ 0.54
CIITA-202ENST00000381835 MAPKBP1O60336 1514 aa18.45■□□□□ 0.54
CIITA-202ENST00000381835 SAMD9LQ8IVG5 1584 aa18.45■□□□□ 0.54
CIITA-202ENST00000381835 ABCC5O15440 1437 aa18.44■□□□□ 0.54
CIITA-202ENST00000381835 HNRNPMP52272 730 aaKnown RBP eCLIP18.43■□□□□ 0.54
CIITA-202ENST00000381835 EFCAB2Q5VUJ9 269 aa18.42■□□□□ 0.54
CIITA-202ENST00000381835 CCER1Q8TC90 406 aaPredicted RBP18.42■□□□□ 0.54
CIITA-202ENST00000381835 SETD5Q9C0A6 1442 aa18.42■□□□□ 0.54
CIITA-202ENST00000381835 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
CIITA-202ENST00000381835 RRP7BPQ9NSQ0 103 aa18.4■□□□□ 0.54
CIITA-202ENST00000381835 RAB3GAP2Q9H2M9 1393 aa18.4■□□□□ 0.54
CIITA-202ENST00000381835 SYCP2Q9BX26 1530 aa18.39■□□□□ 0.53
CIITA-202ENST00000381835 ARAP3Q8WWN8 1544 aa18.38■□□□□ 0.53
CIITA-202ENST00000381835 HFM1A2PYH4 1435 aa18.38■□□□□ 0.53
CIITA-202ENST00000381835 CROCC2H7BZ55 1655 aa18.38■□□□□ 0.53
CIITA-202ENST00000381835 CD109Q6YHK3 1445 aa18.37■□□□□ 0.53
CIITA-202ENST00000381835 FANCAO15360 1455 aa18.37■□□□□ 0.53
CIITA-202ENST00000381835 MBD5Q9P267 1494 aa18.37■□□□□ 0.53
CIITA-202ENST00000381835 NAIPQ13075 1403 aa18.36■□□□□ 0.53
CIITA-202ENST00000381835 AKNAQ7Z591 1439 aa18.36■□□□□ 0.53
CIITA-202ENST00000381835 PLEKHH2Q8IVE3 1493 aa18.35■□□□□ 0.53
CIITA-202ENST00000381835 ARHGEF5Q12774 1597 aa18.35■□□□□ 0.53
CIITA-202ENST00000381835 TSPY4P0CV99 314 aa18.35■□□□□ 0.53
CIITA-202ENST00000381835 TSPY10P0CW01 314 aa18.35■□□□□ 0.53
CIITA-202ENST00000381835 KIAA1107Q9UPP5 1409 aa18.34■□□□□ 0.53
CIITA-202ENST00000381835 CCDC141Q6ZP82 1450 aa18.34■□□□□ 0.53
CIITA-202ENST00000381835 ARHGEF12Q9NZN5 1544 aa18.33■□□□□ 0.52
CIITA-202ENST00000381835 FAM69CQ0P6D2 419 aa18.33■□□□□ 0.52
CIITA-202ENST00000381835 RSPH4AQ5TD94 716 aa18.33■□□□□ 0.52
CIITA-202ENST00000381835 ROCK1Q13464 1354 aa18.33■□□□□ 0.52
CIITA-202ENST00000381835 ABCC1P33527 1531 aa18.33■□□□□ 0.52
CIITA-202ENST00000381835 ADGBQ8N7X0 1667 aa18.33■□□□□ 0.52
CIITA-202ENST00000381835 C9orf84Q5VXU9 1444 aa18.32■□□□□ 0.52
CIITA-202ENST00000381835 GCC2Q8IWJ2 1684 aa18.32■□□□□ 0.52
CIITA-202ENST00000381835 DIP2BQ9P265 1576 aa18.3■□□□□ 0.52
CIITA-202ENST00000381835 SHANK2Q9UPX8 1470 aa18.3■□□□□ 0.52
CIITA-202ENST00000381835 NCOA1Q15788 1441 aa18.3■□□□□ 0.52
CIITA-202ENST00000381835 DNAJC5Q9H3Z4 198 aa18.3■□□□□ 0.52
CIITA-202ENST00000381835 ANKRD30AQ9BXX3 1397 aa18.29■□□□□ 0.52
CIITA-202ENST00000381835 GLI2P10070 1586 aa18.29■□□□□ 0.52
CIITA-202ENST00000381835 MAP3K4Q9Y6R4 1608 aa18.29■□□□□ 0.52
CIITA-202ENST00000381835 ADGRL1O94910 1474 aa18.28■□□□□ 0.52
CIITA-202ENST00000381835 ADGRL2O95490 1459 aa18.28■□□□□ 0.52
CIITA-202ENST00000381835 MYT1Q01538 1121 aa18.28■□□□□ 0.52
CIITA-202ENST00000381835 TRAPPC8Q9Y2L5 1435 aa18.28■□□□□ 0.52
CIITA-202ENST00000381835 DHX57Q6P158 1386 aaKnown RBP18.28■□□□□ 0.52
CIITA-202ENST00000381835 KDM6BO15054 1643 aa18.27■□□□□ 0.51
CIITA-202ENST00000381835 SCAPERQ9BY12 1400 aa18.26■□□□□ 0.51
CIITA-202ENST00000381835 CFAP74Q9C0B2 1584 aa18.26■□□□□ 0.51
CIITA-202ENST00000381835 AFAP1Q8N556 730 aa18.26■□□□□ 0.51
CIITA-202ENST00000381835 TSPOAP1O95153 1857 aa18.25■□□□□ 0.51
CIITA-202ENST00000381835 KIF13AQ9H1H9 1805 aa18.23■□□□□ 0.51
CIITA-202ENST00000381835 MAST1Q9Y2H9 1570 aa18.22■□□□□ 0.51
CIITA-202ENST00000381835 KIF15Q9NS87 1388 aa18.22■□□□□ 0.51
CIITA-202ENST00000381835 SPAG9O60271 1321 aaKnown RBP18.21■□□□□ 0.51
CIITA-202ENST00000381835 TRIM52Q96A61 297 aa18.21■□□□□ 0.51
CIITA-202ENST00000381835 NEO1Q92859 1461 aa18.2■□□□□ 0.5
CIITA-202ENST00000381835 MYT1LQ9UL68 1186 aa18.19■□□□□ 0.5
CIITA-202ENST00000381835 ANKRD50Q9ULJ7 1429 aa18.19■□□□□ 0.5
CIITA-202ENST00000381835 ACIN1Q9UKV3 1341 aaKnown RBP18.17■□□□□ 0.5
CIITA-202ENST00000381835 PLXNC1O60486 1568 aa18.17■□□□□ 0.5
CIITA-202ENST00000381835 ZNF518AQ6AHZ1 1483 aa18.16■□□□□ 0.5
CIITA-202ENST00000381835 PPRC1Q5VV67 1664 aaKnown RBP18.16■□□□□ 0.5
CIITA-202ENST00000381835 DIEXFQ68CQ4 756 aaKnown RBP18.16■□□□□ 0.5
CIITA-202ENST00000381835 ZFYVE16Q7Z3T8 1539 aa18.15■□□□□ 0.5
CIITA-202ENST00000381835 RTEL1-TNFRSF6BF6WH68 1400 aa18.14■□□□□ 0.5
CIITA-202ENST00000381835 POGZQ7Z3K3 1410 aa18.14■□□□□ 0.5
CIITA-202ENST00000381835 ATP7AQ04656 1500 aa18.14■□□□□ 0.49
CIITA-202ENST00000381835 RAPGEF3O95398 923 aa18.14■□□□□ 0.49
CIITA-202ENST00000381835 DENND4BO75064 1496 aaPredicted RBP18.13■□□□□ 0.49
CIITA-202ENST00000381835 TEX14Q8IWB6 1497 aa18.13■□□□□ 0.49
CIITA-202ENST00000381835 CLSPNQ9HAW4 1339 aa18.13■□□□□ 0.49
CIITA-202ENST00000381835 INO80Q9ULG1 1556 aaPredicted RBP18.13■□□□□ 0.49
CIITA-202ENST00000381835 NEUROD1Q13562 356 aa18.11■□□□□ 0.49
CIITA-202ENST00000381835 DUOX2Q9NRD8 1548 aa18.11■□□□□ 0.49
CIITA-202ENST00000381835 KDM5CP41229 1560 aa18.1■□□□□ 0.49
CIITA-202ENST00000381835 KIDINS220Q9ULH0 1771 aa18.1■□□□□ 0.49
CIITA-202ENST00000381835 RICTORQ6R327 1708 aa18.09■□□□□ 0.49
CIITA-202ENST00000381835 MPHOSPH9Q99550 1183 aa18.09■□□□□ 0.49
CIITA-202ENST00000381835 TRHP20396 242 aaPredicted RBP18.08■□□□□ 0.48
CIITA-202ENST00000381835 HECW2Q9P2P5 1572 aa18.07■□□□□ 0.48
CIITA-202ENST00000381835 CENPBP07199 599 aaPredicted RBP18.06■□□□□ 0.48
CIITA-202ENST00000381835 SLC4A1APQ9BWU0 796 aaKnown RBP18.06■□□□□ 0.48
CIITA-202ENST00000381835 NUP155O75694 1391 aa18.06■□□□□ 0.48
CIITA-202ENST00000381835 ERBINQ96RT1 1412 aa18.06■□□□□ 0.48
CIITA-202ENST00000381835 MLH3Q9UHC1 1453 aa18.05■□□□□ 0.48
CIITA-202ENST00000381835 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.04■□□□□ 0.48
CIITA-202ENST00000381835 PZPP20742 1482 aa18.03■□□□□ 0.48
CIITA-202ENST00000381835 FOXD1Q16676 465 aa18.03■□□□□ 0.48
CIITA-202ENST00000381835 SIN3AQ96ST3 1273 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms